FFCP PHASE1:Hg19::chr2:238322924..238322940,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1293 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2213 | |||
|TSSclassifier=strong | |||
|UniProt=E9PCV6,E7ENL6,A8MT30,D9ZGF2,P12111,Q63HQ4,Q8N4Z1,B4E3U5,E9PGQ9,B7ZMJ7,B7ZW00,E9PFQ6 | |||
|association_with_transcript=-74bp_to_ENST00000346358,ENST00000347401,ENST00000353578,ENST00000392003,NM_004369,NM_057164,NM_057165,NM_057166,NM_057167,uc002vwl.2,uc002vwo.2,uc002vwq.2,uc002vwr.2,uc010znj.1,uc010znk.1_5end | |||
|coexpression_cluster_id=C332 | |||
|description=CAGE_peak_6_at_COL6A3_5end | |||
|id=chr2:238322924..238322940,- | |||
|ontology_enrichment_celltype=CL:0000055!2.09e-37!180;CL:0000057!4.67e-28!75;CL:0000048!1.74e-15!430;CL:0000680!1.07e-14!57;CL:0000056!1.07e-14!57;CL:0000355!1.07e-14!57;CL:0000723!1.72e-14!436;CL:0000183!3.62e-14!59;CL:0000187!4.07e-14!54;CL:0000034!3.13e-13!444;CL:0002620!8.48e-13!23;CL:0000393!3.18e-11!60;CL:0000211!3.18e-11!60;CL:0000192!8.14e-10!42;CL:0000514!8.14e-10!42;CL:0002320!3.62e-08!365;CL:0002570!9.75e-08!8;CL:0002371!1.75e-07!591;CL:0000359!3.28e-07!32;CL:0002334!5.29e-07!12;CL:0002494!9.37e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0000723;2.65e-12;61!CL:0000134;4.97e-11;55!CL:0000048;1.27e-10;58!CL:0002570;1.49e-10;8!CL:0002620;4.22e-10;23!CL:0000188;2.03e-08;9!CL:0000057;2.62e-08;73!CL:0000034;2.80e-08;69!CL:0002320;4.37e-08;188!CL:0002540;6.22e-08;6!CL:0002334;4.46e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.38e-23,76;CL:0000048,4.22e-18,427;CL:0000723,2.51e-17,433;CL:0000034,2.48e-16,441;CL:0002320,1.56e-13,361;CL:0000134,1.72e-11,354;CL:0002570,1.65e-10,8;CL:0002620,5.45e-10,23;CL:0000187,9.57e-09,55;CL:0000219,1.37e-08,386;CL:0000188,1.76e-08,9;CL:0002540,5.16e-08,6;CL:0000680,6.60e-08,58;CL:0000056,6.60e-08,58;CL:0000355,6.60e-08,58;CL:0002334,3.27e-07,12;CL:0000393,3.66e-07,61;CL:0000211,3.66e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!5.40e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;9.92e-09;14!DOID:17;7.41e-08;5!DOID:450;7.41e-08;5!DOID:66;7.41e-08;5!DOID:423;7.41e-08;5!DOID:0080000;7.41e-08;5!DOID:11722;7.41e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,9.16e-09,14;DOID:17,8.10e-08,5;DOID:450,8.10e-08,5;DOID:66,8.10e-08,5;DOID:423,8.10e-08,5;DOID:0080000,8.10e-08,5;DOID:11722,8.10e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.57e-17!83;UBERON:0002329!1.57e-17!83;UBERON:0003077!1.57e-17!83;UBERON:0003059!1.57e-17!83;UBERON:0007282!1.57e-17!83;UBERON:0009618!1.57e-17!83;UBERON:0007285!1.57e-17!83;UBERON:0004290!9.07e-17!70;UBERON:0002385!4.95e-15!63;UBERON:0001015!4.95e-15!63;UBERON:0000383!4.95e-15!63;UBERON:0001134!2.38e-14!61;UBERON:0002036!2.38e-14!61;UBERON:0003082!2.38e-14!61;UBERON:0000486!4.44e-13!82;UBERON:0005256!3.21e-11!143;UBERON:0003102!7.98e-11!95;UBERON:0000948!1.38e-10!24;UBERON:0005498!1.38e-10!24;UBERON:0004140!1.38e-10!24;UBERON:0009881!1.38e-10!24;UBERON:0004141!1.38e-10!24;UBERON:0003084!1.38e-10!24;UBERON:0007005!1.38e-10!24;UBERON:0004139!1.38e-10!24;UBERON:0004291!1.38e-10!24;UBERON:0002199!3.35e-10!45;UBERON:0002416!3.35e-10!45;UBERON:0007100!3.97e-10!27;UBERON:0004872!3.18e-09!84;UBERON:0002384!1.75e-08!375;UBERON:0002100!6.45e-08!216;UBERON:0002097!6.63e-08!40;UBERON:0001009!9.61e-08!113;UBERON:0004535!1.17e-07!110;UBERON:0002049!2.35e-07!79;UBERON:0007798!2.35e-07!79;UBERON:0001013!3.83e-07!14;UBERON:0000475!9.01e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0000948;8.10e-09;22!UBERON:0002384;1.05e-08;198!UBERON:0001013;8.02e-08;14!UBERON:0007100;2.88e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.26e-13,371;UBERON:0000948,4.58e-10,24;UBERON:0005498,4.58e-10,24;UBERON:0004140,4.58e-10,24;UBERON:0009881,4.58e-10,24;UBERON:0004141,4.58e-10,24;UBERON:0003084,4.58e-10,24;UBERON:0007005,4.58e-10,24;UBERON:0004139,4.58e-10,24;UBERON:0004291,4.58e-10,24;UBERON:0002199,8.57e-10,46;UBERON:0002416,8.57e-10,46;UBERON:0007100,2.05e-08,27;UBERON:0002329,2.16e-08,71;UBERON:0003059,2.16e-08,71;UBERON:0007282,2.16e-08,71;UBERON:0004290,2.16e-08,71;UBERON:0009618,2.16e-08,71;UBERON:0003102,2.31e-08,99;UBERON:0003077,3.72e-08,72;UBERON:0007285,3.72e-08,72;UBERON:0007524,6.29e-08,73;UBERON:0002385,6.44e-08,64;UBERON:0001015,6.44e-08,64;UBERON:0000383,6.44e-08,64;UBERON:0001013,9.56e-08,14;UBERON:0001134,1.09e-07,62;UBERON:0002036,1.09e-07,62;UBERON:0003082,1.09e-07,62;UBERON:0002097,1.29e-07,41;UBERON:0004797,1.37e-07,7;UBERON:0000486,4.84e-07,83;UBERON:0007503,6.88e-07,78 | |||
|phase1_expression=3.08853244759946,1.2846031433459,1.40954404095971,0,1.78784437770915,0,2.53299878168311,1.26343974685366,0.783556884599516,0.245733936501509,0,0,0.263766978228454,1.23766352960047,0.662794751455832,1.34465029290355,0.602694528023977,0,0.487932798790507,0,0.408001382488506,0.626909442956176,0,0,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.255725123687061,0,1.50401373190767,0.869079113764942,3.9764297352555,5.35298357332899,0,0,0.175669571386252,0.458426764241994,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0.35576626268671,0,0,0,0.24406205754817,0,0,0,0,0.112611480483322,0,0,0,0,0,0,4.47274756525787,1.77282716330412,2.38336525463794,10.8997915884549,2.12801029319014,0.560677600142307,0,0.24666754841716,2.8008993185979,1.75123873690594,0.980771418680752,2.4217188423189,4.60940739583999,1.40592859100278,1.24864030732128,0.570471821544449,0.298897361103602,1.29177948508141,0.809364721840658,0.842704840213491,1.83738754129404,1.10550885580591,1.85986406116378,0,0.741800787835671,1.82032272387605,1.43723628363248,0.673344455816265,0.750711119231785,2.21651292387346,0.438977620880838,0.30648779579902,1.95309476578576,1.58805056424029,9.68704032719855,4.48470516518992,3.60284231971255,10.2030972668697,4.43125875725287,3.60696756063881,0.744467425326359,6.24472429292685,3.89748020644795,5.80597680761463,5.43094401989566,0.969876340912871,4.61512470271599,2.51880245569101,2.20428770003634,0,0,0,0,0,0,0,0,0,3.12899064659632,2.57296375277154,0,1.39310378409594,1.44375896333917,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0.8231480226628,1.47008711385542,0,0,0,0,0,0.343135620597051,0,0,0,0,1.62904152655162,1.03993478527958,0,0,1.05667824812239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0.308482478109971,0,0,0.448524337381443,1.30788020649984,1.6134422880609,0.904902010304444,10.7296933755565,3.381211010224,0.797814349754612,0,2.57207374262142,1.41849132023278,4.52917704327369,2.43062589218851,0.542621605391443,3.29296134712308,2.93162565864362,1.77695974371273,0.791951872933429,0,0,0,0,0,0,0.718874566474748,1.14861935834114,0,0.723906533337896,0.61642896765115,0.179060963239896,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,1.59498939234882,1.50051156317903,1.62759014219841,1.66376689224646,2.49800584316026,1.10391690523754,1.99140405487612,1.80567659836631,2.27407504055985,1.03473071292505,1.32845119707087,1.84369168541703,1.30325421702124,1.76221041716467,1.71571711905428,0,0,0,0,0,0,0.992431231275107,3.52962538562544,4.77122160536225,1.79394808957981,0.511707249066704,2.0911009748669,0,4.1636617326717,2.66342587969691,1.39616165223476,2.59627214591811,2.5566283261191,0,0,0,3.55924789310281,3.64182336013434,1.70461739447251,0,0,0,0,0,0,0,0.431831832204279,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,2.12675580242668,3.38906957652218,2.6095624703442,1.37836572484531,6.23037420235987,2.90033387828457,3.92042486114064,3.82837753280971,0,0,0,0,0,4.40737285562896,0,0.616067160352178,0.532306030317022,0.869932992075073,0.9266210955196,0.429374660225974,1.48863347743867,0.949138274156178,0.571890581771475,0.767693373934002,3.85145089230528,1.59101623962968,0.78494864019923,1.61885211824983,1.09814811894422,1.7671860351853,1.01091240786658,1.58510321173008,2.10629228119491,1.46290121726877,1.46228093778771,0,3.68549760801562,2.40389234321312,2.26016233240486,1.65409603063837,0,0.438450885253763,0,0,0.202910376962704,0.6196469961995,0.281695602532241,0.430234056612155,1.17898849215745,0.7133421029625,2.48332744849418,1.05553817648832,1.64647446479951,0.379473173765715,1.39973888097993,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73254089635947,0,0.111443384277478,0,0,0,0,0,0,0,0,0,1.19548792950642,0.828851746593443,0,0,0,4.66559381492711,0,0,0,2.07151151837561,0,0,0,0,0,0,0,2.17499872630438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30815439456455,0,0,0,0,0,1.28236630762607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.442287822516696,1.83309043480088,0,0,0,0,2.40773294189637,0,0,0,0,0.789168805698781,0,0,0.63186579628488,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0.52418000472609,1.0319161948297,0,0,0,0.775912131907355,0,0.225980740780532,1.50746117111426,0,0,0,0.0801588202515337,1.28071796843612,0,0,0,0,0,0,0,0,0,2.75395187618069,0.866851769704557,0,0,0,0,0,1.11712960508902,1.14580212005842,3.58936512288407,0.399358000997982,0,0.446342914883745,1.74677028465488,2.52209918479682,0,0,0,0,0,0.677386656526276,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.314727528809989,0,0,0,2.1440859791201,0.662091970365432,0,0,0,0.653174720218818,0,0,0.511164065356265,0,0,0,0,0,0,0,0.427149650270779,0.943225830597996,0.414239055347196,0,1.18566979138767,0,0,1.63205341010842,0.2506898940227,0.612691153526923,0.655745261419609,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,1.6468607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| |||
|short_description=p6@COL6A3 | |||
}} |
Revision as of 09:25, 21 January 2014
Short description: | p6@COL6A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_COL6A3_5end |
Coexpression cluster: | C332_Fibroblast_Smooth_Mesenchymal_mesenchymal_Chondrocyte_Skeletal_Pericytes |
Association with transcript: | -74bp_to_ENST00000346358, ENST00000347401, ENST00000353578, ENST00000392003, NM_004369, NM_057164, NM_057165, NM_057166, NM_057167, uc002vwl.2, uc002vwo.2, uc002vwq.2, uc002vwr.2, uc010znj.1, uc010znk.1_5end |
EntrezGene: | COL6A3 |
HGNC: | 2213 |
UniProt: | E9PCV6E7ENL6A8MT30D9ZGF2P12111Q63HQ4Q8N4Z1B4E3U5E9PGQ9B7ZMJ7B7ZW00E9PFQ6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.38e-23 | 76 |
multi fate stem cell | 4.22e-18 | 427 |
somatic stem cell | 2.51e-17 | 433 |
stem cell | 2.48e-16 | 441 |
connective tissue cell | 1.56e-13 | 361 |
mesenchymal cell | 1.72e-11 | 354 |
mesenchymal stem cell of adipose | 1.65e-10 | 8 |
skin fibroblast | 5.45e-10 | 23 |
muscle cell | 9.57e-09 | 55 |
motile cell | 1.37e-08 | 386 |
cell of skeletal muscle | 1.76e-08 | 9 |
mesenchymal stem cell of the bone marrow | 5.16e-08 | 6 |
muscle precursor cell | 6.60e-08 | 58 |
myoblast | 6.60e-08 | 58 |
multi-potent skeletal muscle stem cell | 6.60e-08 | 58 |
preadipocyte | 3.27e-07 | 12 |
electrically responsive cell | 3.66e-07 | 61 |
electrically active cell | 3.66e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 2.26e-13 | 371 |
heart | 4.58e-10 | 24 |
primitive heart tube | 4.58e-10 | 24 |
primary heart field | 4.58e-10 | 24 |
anterior lateral plate mesoderm | 4.58e-10 | 24 |
heart tube | 4.58e-10 | 24 |
heart primordium | 4.58e-10 | 24 |
cardiac mesoderm | 4.58e-10 | 24 |
cardiogenic plate | 4.58e-10 | 24 |
heart rudiment | 4.58e-10 | 24 |
integument | 8.57e-10 | 46 |
integumental system | 8.57e-10 | 46 |
primary circulatory organ | 2.05e-08 | 27 |
somite | 2.16e-08 | 71 |
presomitic mesoderm | 2.16e-08 | 71 |
presumptive segmental plate | 2.16e-08 | 71 |
dermomyotome | 2.16e-08 | 71 |
trunk paraxial mesoderm | 2.16e-08 | 71 |
surface structure | 2.31e-08 | 99 |
paraxial mesoderm | 3.72e-08 | 72 |
presumptive paraxial mesoderm | 3.72e-08 | 72 |
dense mesenchyme tissue | 6.29e-08 | 73 |
muscle tissue | 6.44e-08 | 64 |
musculature | 6.44e-08 | 64 |
musculature of body | 6.44e-08 | 64 |
adipose tissue | 9.56e-08 | 14 |
skeletal muscle tissue | 1.09e-07 | 62 |
striated muscle tissue | 1.09e-07 | 62 |
myotome | 1.09e-07 | 62 |
skin of body | 1.29e-07 | 41 |
blood vessel layer | 1.37e-07 | 7 |
multilaminar epithelium | 4.84e-07 | 83 |
epithelial vesicle | 6.88e-07 | 78 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 9.16e-09 | 14 |
musculoskeletal system disease | 8.10e-08 | 5 |
myotonic disease | 8.10e-08 | 5 |
muscle tissue disease | 8.10e-08 | 5 |
myopathy | 8.10e-08 | 5 |
muscular disease | 8.10e-08 | 5 |
myotonic dystrophy | 8.10e-08 | 5 |