FFCP PHASE1:Hg19::chr2:240220219..240220235,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9759 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14063 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000535493_5end | |||
|coexpression_cluster_id=C1121 | |||
|description=CAGE_peak_8_at_HDAC4_5end | |||
|id=chr2:240220219..240220235,- | |||
|ontology_enrichment_celltype=CL:0000084!2.11e-36!25;CL:0000827!2.11e-36!25;CL:0000791!6.19e-31!18;CL:0000789!6.19e-31!18;CL:0002420!6.19e-31!18;CL:0002419!6.19e-31!18;CL:0000790!6.19e-31!18;CL:0000838!6.58e-24!52;CL:0000542!2.71e-23!53;CL:0000051!2.71e-23!53;CL:0000738!8.84e-19!140;CL:0000625!8.55e-18!11;CL:0002087!3.41e-17!119;CL:0000988!1.67e-15!182;CL:0000037!1.73e-15!172;CL:0000566!1.73e-15!172;CL:0000624!3.75e-13!6;CL:0002031!7.83e-13!124;CL:0002032!8.05e-13!165;CL:0000837!8.05e-13!165;CL:0000080!1.72e-08!6;CL:0000842!1.43e-07!3;CL:0000623!5.98e-07!3;CL:0000825!5.98e-07!3;CL:0000898!6.62e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000084;3.60e-40;25!CL:0000791;3.27e-37;18!CL:0000789;3.27e-37;18!CL:0002419;3.27e-37;18!CL:0000624;4.24e-18;6!CL:0000625;4.79e-18;11!CL:0000226;9.31e-14;3!CL:0000842;9.31e-14;3!CL:0000542;1.05e-11;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,3.01e-40,25;CL:0000827,3.01e-40,25;CL:0000791,3.34e-37,18;CL:0000789,3.34e-37,18;CL:0002420,3.34e-37,18;CL:0002419,3.34e-37,18;CL:0000790,3.34e-37,18;CL:0000838,3.02e-22,52;CL:0000542,9.59e-22,53;CL:0000051,9.59e-22,53;CL:0000624,2.68e-18,6;CL:0000625,5.48e-18,11;CL:0000226,8.20e-14,3;CL:0000842,8.20e-14,3;CL:0002087,1.81e-12,115;CL:0000738,3.32e-12,136;CL:0000037,8.25e-10,168;CL:0000988,4.97e-09,177;CL:0000893,6.58e-09,2;CL:0002489,6.58e-09,2;CL:0000809,6.58e-09,2;CL:0000808,6.58e-09,2;CL:0000894,6.58e-09,2;CL:0000806,6.58e-09,2;CL:0000807,6.58e-09,2;CL:0000805,6.58e-09,2;CL:0002425,6.58e-09,2;CL:0002031,3.46e-08,120 | |||
|ontology_enrichment_development_v019=CL:0000790;3.27e-37;18!CL:0000051;1.05e-11;53!CL:0002425;5.34e-09;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!5.55e-18!15;UBERON:0000179!5.55e-18!15;UBERON:0000463!5.55e-18!15;UBERON:0004177!3.92e-10!7;UBERON:0002370!4.25e-09!4;UBERON:0005058!4.25e-09!4;UBERON:0009113!4.25e-09!4;UBERON:0003295!4.25e-09!4;UBERON:0005562!4.25e-09!4;UBERON:0002390!1.17e-07!102;UBERON:0003061!1.17e-07!102;UBERON:0002193!4.92e-07!112;UBERON:0000974!8.26e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.48e-26;15!UBERON:0000179;2.48e-26;15!UBERON:0000463;2.48e-26;15!UBERON:0002390;1.48e-15;32!UBERON:0002370;7.07e-10;2!UBERON:0005058;7.07e-10;2!UBERON:0009113;7.07e-10;2!UBERON:0002193;4.52e-09;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.60e-26,15;UBERON:0000179,2.60e-26,15;UBERON:0000463,2.60e-26,15;UBERON:0002370,6.46e-17,4;UBERON:0005058,6.46e-17,4;UBERON:0009113,6.46e-17,4;UBERON:0003295,6.46e-17,4;UBERON:0005562,6.46e-17,4;UBERON:0003351,2.55e-11,6;UBERON:0003408,3.32e-10,10;UBERON:0004177,1.03e-09,7;UBERON:0005057,1.03e-09,7;UBERON:0000974,8.11e-07,10;UBERON:0001042,8.11e-07,10;UBERON:0009145,8.11e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0.383829398097213,0.154816123316076,0,0,0,0,0,0,0,1.20326668482085,0.868043482863407,0,0.647787332037959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0.641858054152187,0,0,0,0,0.290209238628584,0.56738522469114,0,0.251248665256743,0.521482918420201,0,0,0.736555271975129,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0.560508562981536,0,6.49142241375649,7.46720449223413,4.11202997999018,0,1.95553359980154,1.4203434172042,1.94826728407911,0.222820913770347,0.589211814949674,0.443067789167242,0.270803863765016,0.512365278902701,0,2.13769275984779,2.21080014228679,1.15921234294021,2.66915813691709,6.42097987415311,4.18142095219907,0.679856056185397,1.53288197440768,2.74901956386104,3.03623630423403,2.86708872891687,1.30216690771284,0.950452044448374,2.55977702432214,0.639933055772092,3.74792179657038,2.36777252044017,0,1.00803371612366,0.802320587350522,2.75166367377318,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.5682822806835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.317489471460845,1.52795370223311,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00876629594175,0.985153801009636,1.50939302401662,1.54011643535698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48121631347465,3.01999881146064,2.98837161849644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52234282769651,0,3.98753031021914,1.19115887728894,2.46817363851717,1.94541993357815,1.08006287447623,3.17250070517708,0,0,0,0,0,6.82961696144775,1.91311527274587,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39203086947621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.494411622680279,0,0.398495976502139,0.552567831062295,0.503865495708552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.10966490978682,0,0,0,0,0,0.75901493089674,0.317873157960757,0,0,0,0,0,0,0.611030144933625,0.296521128680622,0,0.208843899010911,0,0,0,0.547364367646998,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.74551996579143,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0.79994958341972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342976018874837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0.218559560503957,0,0,0,0,0,0,0,0.0939839179798536,0.709036767709349,0,0,0,0,0,1.83491713361816,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,0.476128862927481,2.1314340245882,4.09693114352662,0,0,0.202117188958219,0,0,0.471464371102113,0,0,0,0,0,0,0,0,0,0,1.20764276154616,0 | |||
|short_description=p8@HDAC4 | |||
}} |
Revision as of 09:32, 21 January 2014
Short description: | p8@HDAC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_HDAC4_5end |
Coexpression cluster: | C1121_Hodgkin_CD4_acute_CD8_thymus_Natural_chronic |
Association with transcript: | 0bp_to_ENST00000535493_5end |
EntrezGene: | HDAC4 |
HGNC: | 14063 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 3.01e-40 | 25 |
pro-T cell | 3.01e-40 | 25 |
mature alpha-beta T cell | 3.34e-37 | 18 |
alpha-beta T cell | 3.34e-37 | 18 |
immature T cell | 3.34e-37 | 18 |
mature T cell | 3.34e-37 | 18 |
immature alpha-beta T cell | 3.34e-37 | 18 |
lymphoid lineage restricted progenitor cell | 3.02e-22 | 52 |
lymphocyte | 9.59e-22 | 53 |
common lymphoid progenitor | 9.59e-22 | 53 |
CD4-positive, alpha-beta T cell | 2.68e-18 | 6 |
CD8-positive, alpha-beta T cell | 5.48e-18 | 11 |
single nucleate cell | 8.20e-14 | 3 |
mononuclear cell | 8.20e-14 | 3 |
nongranular leukocyte | 1.81e-12 | 115 |
leukocyte | 3.32e-12 | 136 |
hematopoietic stem cell | 8.25e-10 | 168 |
hematopoietic cell | 4.97e-09 | 177 |
thymocyte | 6.58e-09 | 2 |
double negative thymocyte | 6.58e-09 | 2 |
double-positive, alpha-beta thymocyte | 6.58e-09 | 2 |
DN4 thymocyte | 6.58e-09 | 2 |
DN1 thymic pro-T cell | 6.58e-09 | 2 |
DN2 thymocyte | 6.58e-09 | 2 |
DN3 thymocyte | 6.58e-09 | 2 |
immature single positive thymocyte | 6.58e-09 | 2 |
early T lineage precursor | 6.58e-09 | 2 |
hematopoietic lineage restricted progenitor cell | 3.46e-08 | 120 |
Ontology term | p-value | n |
---|---|---|
blood | 2.60e-26 | 15 |
haemolymphatic fluid | 2.60e-26 | 15 |
organism substance | 2.60e-26 | 15 |
thymus | 6.46e-17 | 4 |
hemolymphoid system gland | 6.46e-17 | 4 |
thymic region | 6.46e-17 | 4 |
pharyngeal gland | 6.46e-17 | 4 |
thymus primordium | 6.46e-17 | 4 |
pharyngeal epithelium | 2.55e-11 | 6 |
gland of gut | 3.32e-10 | 10 |
hemopoietic organ | 1.03e-09 | 7 |
immune organ | 1.03e-09 | 7 |
neck | 8.11e-07 | 10 |
chordate pharynx | 8.11e-07 | 10 |
pharyngeal region of foregut | 8.11e-07 | 10 |