FFCP PHASE1:Hg19::chr3:58200171..58200183,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1776 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2959 | |||
|TSSclassifier=not | |||
|UniProt=Q13609,C9J0L2 | |||
|association_with_transcript=214bp_to_ENST00000318316,ENST00000460422,NM_004944,uc003djp.1_5end | |||
|coexpression_cluster_id=C74 | |||
|description=CAGE_peak_11_at_DNASE1L3_5end | |||
|id=chr3:58200171..58200183,- | |||
|ontology_enrichment_celltype=CL:0000840!1.51e-27!5;CL:0001029!1.51e-27!5;CL:0002009!7.72e-25!65;CL:0002087!2.85e-24!119;CL:0000738!3.60e-24!140;CL:0002031!3.94e-23!124;CL:0002194!1.16e-22!63;CL:0000576!1.16e-22!63;CL:0000040!1.16e-22!63;CL:0000559!1.16e-22!63;CL:0000557!1.75e-22!71;CL:0000451!2.97e-21!10;CL:0000839!4.12e-20!70;CL:0002619!1.16e-19!3;CL:0000037!8.11e-19!172;CL:0000566!8.11e-19!172;CL:0000990!2.53e-18!8;CL:0000766!2.71e-18!76;CL:0002032!5.60e-18!165;CL:0000837!5.60e-18!165;CL:0000988!1.58e-17!182;CL:0000763!4.40e-13!112;CL:0000049!4.40e-13!112;CL:0002057!5.57e-11!42;CL:0000860!3.74e-10!45;CL:0000784!8.16e-10!3;CL:0000945!1.49e-09!24;CL:0000826!1.49e-09!24;CL:0000946!4.99e-08!1;CL:0000786!4.99e-08!1;CL:0000980!4.99e-08!1 | |||
|ontology_enrichment_celltype_v019=CL:0000840;1.54e-27;5!CL:0000451;2.18e-26;10!CL:0000946;3.56e-19;1!CL:0000786;3.56e-19;1!CL:0000945;6.42e-19;24!CL:0000990;1.28e-18;8!CL:0000784;2.88e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000840,1.23e-27,5;CL:0001029,1.23e-27,5;CL:0000451,2.18e-26,10;CL:0000946,4.69e-19,1;CL:0000786,4.69e-19,1;CL:0000980,4.69e-19,1;CL:0000945,6.79e-19,24;CL:0000826,6.79e-19,24;CL:0000990,1.10e-18,8;CL:0000738,1.65e-12,136;CL:0002087,4.93e-12,115;CL:0002031,1.64e-11,120;CL:0000785,3.27e-10,2;CL:0000955,3.27e-10,2;CL:0000818,3.27e-10,2;CL:0000954,3.27e-10,2;CL:0000816,3.27e-10,2;CL:0000037,5.23e-10,168;CL:0000988,1.83e-09,177;CL:0000838,8.98e-09,52;CL:0000542,1.31e-08,53;CL:0000051,1.31e-08,53;CL:0002032,1.97e-08,161;CL:0000837,1.97e-08,161;CL:0000817,3.16e-07,3;CL:0000784,3.35e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000954;2.85e-10;2 | |||
|ontology_enrichment_disease=DOID:2355!1.11e-07!1;DOID:12603!1.54e-07!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.10e-21!102;UBERON:0003061!5.10e-21!102;UBERON:0002371!1.33e-19!80;UBERON:0002193!8.37e-19!112;UBERON:0002405!3.26e-18!115;UBERON:0001474!5.14e-18!86;UBERON:0004765!7.31e-15!101;UBERON:0001434!7.31e-15!101;UBERON:0002106!1.11e-09!3;UBERON:0004854!1.11e-09!3;UBERON:0009034!1.11e-09!3;UBERON:0002095!1.11e-09!3;UBERON:0004782!1.11e-09!3;UBERON:0003281!1.11e-09!3;UBERON:0009664!1.11e-09!3;UBERON:0002296!1.11e-09!3;UBERON:0005602!1.11e-09!3;UBERON:0001179!1.11e-09!3;UBERON:0006293!1.11e-09!3;UBERON:0002204!8.56e-09!167;UBERON:0004177!8.84e-09!7;UBERON:0003081!7.04e-08!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;1.82e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,1.82e-07,3;UBERON:0004854,1.82e-07,3;UBERON:0009034,1.82e-07,3;UBERON:0002095,1.82e-07,3;UBERON:0004782,1.82e-07,3;UBERON:0003281,1.82e-07,3;UBERON:0009664,1.82e-07,3;UBERON:0002296,1.82e-07,3;UBERON:0005602,1.82e-07,3;UBERON:0001179,1.82e-07,3;UBERON:0006293,1.82e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.90370941842215,2.21671591514854,2.75487734597877,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0.32389366601898,0.257575567634187,0.145398238779565,0,0,0.232429036905685,0.411167888021826,0.929119112685311,0,0,0.236482229888585,0,1.93645405075148,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0.56738522469114,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9472843619281,1.74129737299267,2.52620124985844,0.953962497221368,1.14398982156026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72318727645497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.359030577639089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254019996197353,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38280785066935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128915775947154,7.29570438251981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p11@DNASE1L3 | |||
}} |
Revision as of 19:25, 21 January 2014
Short description: | p11@DNASE1L3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_DNASE1L3_5end |
Coexpression cluster: | C74_splenic_B_b_plasma_xeroderma_lymphoma_hairy |
Association with transcript: | 214bp_to_ENST00000318316, ENST00000460422, NM_004944, uc003djp.1_5end |
EntrezGene: | DNASE1L3 |
HGNC: | 2959 |
UniProt: | Q13609C9J0L2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
immature conventional dendritic cell | 1.23e-27 | 5 |
common dendritic progenitor | 1.23e-27 | 5 |
dendritic cell | 2.18e-26 | 10 |
antibody secreting cell | 4.69e-19 | 1 |
plasma cell | 4.69e-19 | 1 |
plasmablast | 4.69e-19 | 1 |
lymphocyte of B lineage | 6.79e-19 | 24 |
pro-B cell | 6.79e-19 | 24 |
conventional dendritic cell | 1.10e-18 | 8 |
leukocyte | 1.65e-12 | 136 |
nongranular leukocyte | 4.93e-12 | 115 |
hematopoietic lineage restricted progenitor cell | 1.64e-11 | 120 |
mature B cell | 3.27e-10 | 2 |
pre-B-II cell | 3.27e-10 | 2 |
transitional stage B cell | 3.27e-10 | 2 |
small pre-B-II cell | 3.27e-10 | 2 |
immature B cell | 3.27e-10 | 2 |
hematopoietic stem cell | 5.23e-10 | 168 |
hematopoietic cell | 1.83e-09 | 177 |
lymphoid lineage restricted progenitor cell | 8.98e-09 | 52 |
lymphocyte | 1.31e-08 | 53 |
common lymphoid progenitor | 1.31e-08 | 53 |
hematopoietic oligopotent progenitor cell | 1.97e-08 | 161 |
hematopoietic multipotent progenitor cell | 1.97e-08 | 161 |
precursor B cell | 3.16e-07 | 3 |
plasmacytoid dendritic cell | 3.35e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
spleen | 1.82e-07 | 3 |
gastrointestinal system mesentery | 1.82e-07 | 3 |
stomach region | 1.82e-07 | 3 |
mesentery | 1.82e-07 | 3 |
gastrointestinal system serosa | 1.82e-07 | 3 |
mesentery of stomach | 1.82e-07 | 3 |
gut mesentery | 1.82e-07 | 3 |
dorsal mesentery | 1.82e-07 | 3 |
dorsal mesogastrium | 1.82e-07 | 3 |
peritoneal cavity | 1.82e-07 | 3 |
spleen primordium | 1.82e-07 | 3 |