FFCP PHASE1:Hg19::chr4:113437332..113437337,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=63973 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13805 | |||
|TSSclassifier=strong | |||
|UniProt=Q9H2A3 | |||
|association_with_transcript=-4bp_to_ENST00000313341,NM_024019,uc003ias.2_5end | |||
|coexpression_cluster_id=C10 | |||
|description=CAGE_peak_1_at_NEUROG2_5end | |||
|id=chr4:113437332..113437337,- | |||
|ontology_enrichment_celltype=CL:0002319!7.07e-10!25;CL:0000133!1.37e-09!59;CL:0000128!4.57e-09!7;CL:0000126!4.57e-09!7;CL:0000127!4.57e-09!7;CL:0002453!4.57e-09!7;CL:0000047!7.62e-09!8;CL:0002605!1.20e-08!3;CL:0000221!2.78e-07!71;CL:0000838!3.07e-07!52;CL:0000945!4.20e-07!24;CL:0000826!4.20e-07!24;CL:0000542!4.87e-07!53;CL:0000051!4.87e-07!53 | |||
|ontology_enrichment_celltype_v019=CL:0002319;9.72e-20;25!CL:0000047;3.25e-15;2!CL:0000540;1.93e-11;6!CL:0000404;1.93e-11;6!CL:0002605;5.06e-10;3!CL:0000945;8.91e-10;24!CL:0000128;2.62e-09;7!CL:0000126;2.62e-09;7!CL:0000127;2.62e-09;7!CL:0000946;5.82e-08;1!CL:0000786;5.82e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,2.58e-22,8;CL:0002319,9.51e-20,25;CL:0000133,7.02e-17,59;CL:0000221,1.75e-13,72;CL:0000540,1.93e-11,6;CL:0000031,1.93e-11,6;CL:0000404,1.93e-11,6;CL:0002605,4.51e-10,3;CL:0000945,8.76e-10,24;CL:0000826,8.76e-10,24;CL:0000128,2.58e-09,7;CL:0000126,2.58e-09,7;CL:0000127,2.58e-09,7;CL:0002453,2.58e-09,7;CL:0000946,5.82e-08,1;CL:0000786,5.82e-08,1;CL:0000980,5.82e-08,1;CL:0000333,4.62e-07,41 | |||
|ontology_enrichment_development_v019=CL:0000031;1.93e-11;6!CL:0000133;2.83e-10;59 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:630;2.17e-08;1!DOID:0050177;2.17e-08;1!DOID:0050427;2.17e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:630,2.17e-08,1;DOID:0050177,2.17e-08,1;DOID:0050427,2.17e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0000073!2.15e-15!94;UBERON:0001016!2.15e-15!94;UBERON:0005743!1.32e-13!86;UBERON:0001017!2.05e-13!82;UBERON:0004121!8.10e-09!169;UBERON:0002780!1.96e-08!41;UBERON:0001890!1.96e-08!41;UBERON:0006240!1.96e-08!41;UBERON:0000924!1.99e-08!173;UBERON:0006601!1.99e-08!173;UBERON:0003080!3.66e-08!42;UBERON:0001049!4.41e-08!57;UBERON:0005068!4.41e-08!57;UBERON:0006241!4.41e-08!57;UBERON:0007135!4.41e-08!57;UBERON:0002791!5.20e-08!33;UBERON:0000955!7.38e-08!69;UBERON:0006238!7.38e-08!69;UBERON:0001893!1.05e-07!34;UBERON:0002020!1.05e-07!34;UBERON:0003528!1.05e-07!34;UBERON:0002616!1.11e-07!59;UBERON:0001869!5.22e-07!32;UBERON:0003075!5.44e-07!86;UBERON:0007284!5.44e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.61e-12,89;UBERON:0001017,4.95e-10,81;UBERON:0004121,2.70e-08,171;UBERON:0000924,2.70e-08,171;UBERON:0006601,2.70e-08,171 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.522371256399677,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,4.29353980696585,0.410623275218653,1.75759695432724,2.44522898393444,2.21671591514854,2.59745578335141,0,0,0.154816123316076,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0.659702600373432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0.786021525498329,0,0,0,0,0,0,0,0,0,0,0,0,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604820229674197,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0.829288440122964,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.811512834825538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,3.30323011489202,61.1657313130822,44.8507511411063,25.2949560654867,29.3451825760455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18785872333055,0,0,0.140669416410513,0,0,0,0,0,0,2.14764233254525,5.78498585667027,0,0,0,0,0,0,0,0,0,15.9691038400955,0,0,0,0,0,0,0.689486746482929,0.583209226766509,0,0,0,0,0,0.295547618953547,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,4.55242743545572,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48260564340311,0.370691816839509,0.522109747527277,0.134802265961354,0,0,0.182454789215666,0,0,0,0,22.3433115990258,0.063186579628488,0.300646838828985,0,0,0,0,1.19472429772959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0.197611631897944,0.243585196761792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21319294033318,0,0,0,66.6636731609796,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0.19998739585493,0,0,0,0,0,2.48830904013189,19.9515219233697,3.23474434190045,0,0.436838552768056,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,129.312780161741,0,0,0,0,0,0.183428598521679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27.8957152599292,0,0,0,0.127762427639595,0.535701835878287,0.672567444437648,0,0,0,1.26757386311357,0,0,0,0,0,0,0.314231179832004,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.701818390386317,0,0,0,0.659643100472575,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0.0999411559249289,0,0,0,0,0,0,0,0,17.0176769232747,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0.803892390468535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898252021065869,0,0,0.406896178315738,0,0,8.97591778449052 | |||
|short_description=p1@NEUROG2 | |||
}} |
Revision as of 02:46, 22 January 2014
Short description: | p1@NEUROG2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_NEUROG2_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | -4bp_to_ENST00000313341, NM_024019, uc003ias.2_5end |
EntrezGene: | NEUROG2 |
HGNC: | 13805 |
UniProt: | Q9H2A3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 2.58e-22 | 8 |
neural cell | 9.51e-20 | 25 |
neurectodermal cell | 7.02e-17 | 59 |
ectodermal cell | 1.75e-13 | 72 |
neuron | 1.93e-11 | 6 |
neuroblast | 1.93e-11 | 6 |
electrically signaling cell | 1.93e-11 | 6 |
astrocyte of the cerebral cortex | 4.51e-10 | 3 |
lymphocyte of B lineage | 8.76e-10 | 24 |
pro-B cell | 8.76e-10 | 24 |
oligodendrocyte | 2.58e-09 | 7 |
macroglial cell | 2.58e-09 | 7 |
astrocyte | 2.58e-09 | 7 |
oligodendrocyte precursor cell | 2.58e-09 | 7 |
antibody secreting cell | 5.82e-08 | 1 |
plasma cell | 5.82e-08 | 1 |
plasmablast | 5.82e-08 | 1 |
migratory neural crest cell | 4.62e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.61e-12 | 89 |
central nervous system | 4.95e-10 | 81 |
ectoderm-derived structure | 2.70e-08 | 171 |
ectoderm | 2.70e-08 | 171 |
presumptive ectoderm | 2.70e-08 | 171 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 2.17e-08 | 1 |
monogenic disease | 2.17e-08 | 1 |
xeroderma pigmentosum | 2.17e-08 | 1 |