FFCP PHASE1:Hg19::chr6:30294289..30294313,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56658 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10065 | |||
|TSSclassifier=strong | |||
|UniProt=A2AAZ5 | |||
|association_with_transcript=33bp_to_ENST00000458516,uc003npz.2_5end | |||
|coexpression_cluster_id=C448 | |||
|description=CAGE_peak_2_at_TRIM39_5end | |||
|id=chr6:30294289..30294313,+ | |||
|ontology_enrichment_celltype=CL:0000766!1.83e-22!76;CL:0000738!3.64e-22!140;CL:0000037!3.78e-22!172;CL:0000566!3.78e-22!172;CL:0000012!4.15e-22!682;CL:0000063!4.43e-22!578;CL:0002057!2.01e-21!42;CL:0000988!3.97e-21!182;CL:0000763!9.23e-21!112;CL:0000049!9.23e-21!112;CL:0000548!1.45e-20!679;CL:0000004!1.45e-20!679;CL:0000255!1.45e-20!679;CL:0002032!6.27e-20!165;CL:0000837!6.27e-20!165;CL:0000557!8.59e-20!71;CL:0000003!1.75e-19!722;CL:0000860!1.18e-18!45;CL:0002009!3.63e-18!65;CL:0000839!1.84e-17!70;CL:0002194!5.49e-17!63;CL:0000576!5.49e-17!63;CL:0000040!5.49e-17!63;CL:0000559!5.49e-17!63;CL:0000144!1.03e-16!625;CL:0002031!1.56e-16!124;CL:0002087!4.08e-16!119;CL:0000134!7.80e-14!358;CL:0000034!7.00e-13!444;CL:0000048!7.13e-13!430;CL:0002371!2.55e-12!591;CL:0000723!3.65e-12!436;CL:0002320!4.27e-12!365;CL:0000219!2.21e-10!390 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.31e-17;33!CL:0002057;4.31e-17;33!CL:0000473;2.93e-14;39!CL:0000234;2.93e-14;39!CL:0000766;1.20e-12;69!CL:0000576;3.55e-12;48!CL:0000763;1.30e-07;100!CL:0000094;4.97e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,3.38e-28,72;CL:0000763,1.20e-25,108;CL:0000049,1.20e-25,108;CL:0000738,2.15e-25,136;CL:0000037,2.72e-25,168;CL:0000557,4.23e-25,67;CL:0000988,3.43e-24,177;CL:0000860,1.56e-23,42;CL:0002057,1.56e-23,42;CL:0002009,2.49e-23,61;CL:0000473,4.13e-23,48;CL:0000234,4.13e-23,48;CL:0002032,4.86e-23,161;CL:0000837,4.86e-23,161;CL:0000839,1.77e-22,66;CL:0002194,6.11e-22,59;CL:0000576,6.11e-22,59;CL:0000040,6.11e-22,59;CL:0000559,6.11e-22,59;CL:0002031,2.86e-19,120;CL:0002087,1.10e-18,115;CL:0000134,1.17e-13,354;CL:0002320,4.10e-12,361;CL:0000034,6.82e-12,441;CL:0000048,7.01e-12,427;CL:0000723,2.75e-11,433;CL:0000219,1.30e-09,386;CL:0000094,9.26e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;3.33e-17;42!CL:0000049;3.75e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001474!9.94e-21!86;UBERON:0002371!5.00e-20!80;UBERON:0002405!1.38e-15!115;UBERON:0002390!1.61e-15!102;UBERON:0003061!1.61e-15!102;UBERON:0002193!3.71e-15!112;UBERON:0004765!9.10e-15!101;UBERON:0001434!9.10e-15!101;UBERON:0002384!7.69e-12!375;UBERON:0002204!2.91e-08!167;UBERON:0003081!5.32e-08!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,5.66e-25,82;UBERON:0002371,9.56e-25,76;UBERON:0002405,1.41e-20,93;UBERON:0004765,4.59e-20,90;UBERON:0002390,8.76e-20,98;UBERON:0003061,8.76e-20,98;UBERON:0002193,2.75e-19,108;UBERON:0001434,4.48e-15,100;UBERON:0002384,1.43e-11,371;UBERON:0003081,1.16e-10,203;UBERON:0002204,8.14e-08,167 | |||
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| |||
|short_description=p2@TRIM39 | |||
}} |
Revision as of 10:48, 22 January 2014
Short description: | p2@TRIM39 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TRIM39_5end |
Coexpression cluster: | C448_Eosinophils_CD19_Neutrophils_immature_CD14_CD34_CD4 |
Association with transcript: | 33bp_to_ENST00000458516, uc003npz.2_5end |
EntrezGene: | TRIM39 |
HGNC: | 10065 |
UniProt: | A2AAZ5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 3.38e-28 | 72 |
myeloid cell | 1.20e-25 | 108 |
common myeloid progenitor | 1.20e-25 | 108 |
leukocyte | 2.15e-25 | 136 |
hematopoietic stem cell | 2.72e-25 | 168 |
granulocyte monocyte progenitor cell | 4.23e-25 | 67 |
hematopoietic cell | 3.43e-24 | 177 |
classical monocyte | 1.56e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.56e-23 | 42 |
macrophage dendritic cell progenitor | 2.49e-23 | 61 |
defensive cell | 4.13e-23 | 48 |
phagocyte | 4.13e-23 | 48 |
hematopoietic oligopotent progenitor cell | 4.86e-23 | 161 |
hematopoietic multipotent progenitor cell | 4.86e-23 | 161 |
myeloid lineage restricted progenitor cell | 1.77e-22 | 66 |
monopoietic cell | 6.11e-22 | 59 |
monocyte | 6.11e-22 | 59 |
monoblast | 6.11e-22 | 59 |
promonocyte | 6.11e-22 | 59 |
hematopoietic lineage restricted progenitor cell | 2.86e-19 | 120 |
nongranular leukocyte | 1.10e-18 | 115 |
mesenchymal cell | 1.17e-13 | 354 |
connective tissue cell | 4.10e-12 | 361 |
stem cell | 6.82e-12 | 441 |
multi fate stem cell | 7.01e-12 | 427 |
somatic stem cell | 2.75e-11 | 433 |
motile cell | 1.30e-09 | 386 |
granulocyte | 9.26e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
bone element | 5.66e-25 | 82 |
bone marrow | 9.56e-25 | 76 |
immune system | 1.41e-20 | 93 |
skeletal element | 4.59e-20 | 90 |
hematopoietic system | 8.76e-20 | 98 |
blood island | 8.76e-20 | 98 |
hemolymphoid system | 2.75e-19 | 108 |
skeletal system | 4.48e-15 | 100 |
connective tissue | 1.43e-11 | 371 |
lateral plate mesoderm | 1.16e-10 | 203 |
musculoskeletal system | 8.14e-08 | 167 |