FFCP PHASE1:Hg19::chr6:152623434..152623449,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23345 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17089 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-30bp_to_ENST00000489156_5end | |||
|description=CAGE_peak_21_at_SYNE1_5end | |||
|id=chr6:152623434..152623449,- | |||
|ontology_enrichment_celltype=CL:0002194!2.73e-24!63;CL:0000576!2.73e-24!63;CL:0000040!2.73e-24!63;CL:0000559!2.73e-24!63;CL:0002057!2.91e-23!42;CL:0002009!4.92e-23!65;CL:0000557!4.35e-21!71;CL:0000860!7.88e-21!45;CL:0000766!1.73e-20!76;CL:0000839!3.16e-20!70;CL:0002087!4.22e-16!119;CL:0000738!1.64e-13!140;CL:0000763!5.75e-13!112;CL:0000049!5.75e-13!112;CL:0002031!1.69e-12!124;CL:0000037!2.45e-11!172;CL:0000566!2.45e-11!172;CL:0000988!4.01e-10!182;CL:0002032!1.12e-09!165;CL:0000837!1.12e-09!165;CL:0002393!5.51e-08!9;CL:0002397!5.51e-08!9 | |||
|ontology_enrichment_celltype_v019=CL:0000235;6.99e-36;6!CL:0000473;5.36e-22;39!CL:0000234;5.36e-22;39!CL:0000860;2.28e-11;33!CL:0002057;2.28e-11;33!CL:0000766;6.47e-10;69!CL:0002032;1.42e-09;1!CL:0000557;1.42e-09;1!CL:0000576;2.47e-08;48!CL:0000763;2.16e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000235,7.82e-36,6;CL:0000473,1.07e-31,48;CL:0000234,1.07e-31,48;CL:0000557,5.14e-25,67;CL:0002194,7.00e-25,59;CL:0000576,7.00e-25,59;CL:0000040,7.00e-25,59;CL:0000559,7.00e-25,59;CL:0002009,5.31e-24,61;CL:0000839,4.97e-22,66;CL:0000766,5.08e-20,72;CL:0000763,1.28e-14,108;CL:0000049,1.28e-14,108;CL:0000860,1.32e-14,42;CL:0002057,1.32e-14,42;CL:0002087,1.44e-13,115;CL:0002031,6.72e-13,120;CL:0000738,4.41e-11,136;CL:0002032,2.24e-10,161;CL:0000837,2.24e-10,161;CL:0000037,7.92e-10,168;CL:0000988,3.47e-09,177 | |||
|ontology_enrichment_development_v019=CL:0002057;2.27e-11;42!CL:0000049;2.42e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3371;5.78e-10;1!DOID:4549;5.78e-10;1!DOID:5861;5.78e-10;1!DOID:6496;5.78e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,4.87e-10,1;DOID:4549,4.87e-10,1;DOID:5861,4.87e-10,1;DOID:6496,4.87e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0002371!3.99e-19!80;UBERON:0001474!1.11e-18!86;UBERON:0004765!4.79e-15!101;UBERON:0001434!4.79e-15!101;UBERON:0002390!1.10e-14!102;UBERON:0003061!1.10e-14!102;UBERON:0002193!1.95e-12!112;UBERON:0002405!2.25e-12!115;UBERON:0003081!2.92e-11!216;UBERON:0002204!1.37e-09!167;UBERON:0007023!2.82e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0002135;1.42e-09;1!UBERON:0002171;1.42e-09;1!UBERON:0006518;1.42e-09;1!UBERON:0008949;1.42e-09;1!UBERON:0000101;1.42e-09;1!UBERON:0002167;1.42e-09;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,4.97e-23,82;UBERON:0002371,8.67e-22,76;UBERON:0004765,9.23e-21,90;UBERON:0001434,1.98e-18,100;UBERON:0002405,2.25e-17,93;UBERON:0002390,2.31e-16,98;UBERON:0003061,2.31e-16,98;UBERON:0002193,1.28e-14,108;UBERON:0002204,6.00e-10,167;UBERON:0002171,1.48e-09,1;UBERON:0006518,1.48e-09,1;UBERON:0008949,1.48e-09,1;UBERON:0000101,1.48e-09,1;UBERON:0002167,1.48e-09,1;UBERON:0002135,2.08e-09,1;UBERON:0003081,7.48e-09,203 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0.730310090387373,0,0,0,0,0,0.136874425072884,0.125542639594803,0.229240217243854,0,0.0787107813136792,0.393364276848904,0.383829398097213,0.154816123316076,0,0,0,1.23947520928483,0.142169232487422,0.587200878669695,0,1.00272223735071,0.651032612147555,0.223915474239924,0.32389366601898,0.77272670290256,0.290796477559129,1.51150377475524,1.69808842831471,0.232429036905685,0.822335776043652,0.929119112685311,0,0.512321413058201,0,0.344745680736619,1.29096936716765,0,0.564727018627814,1.09162460023138,0.674170453335254,0.612167784741805,0.962787081228281,0.639337125799041,0.329851300186716,0.598390972864896,0,0.870627715885752,1.70215567407342,0,0.251248665256743,0,0.217188844705117,1.21079900526674,1.10483290796269,0.632924774881769,0.845021145247767,0.850417199860174,0.209658645508376,0.112328631146495,0,0.16072558669708,0.855038231223746,3.58050018958362,0.730656615058536,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0.175669571386252,0.130979075497713,0,0,0,0,0.398873881556595,0.238490624305342,0.571994910780128,0,0,0,0.347140501607594,0,0.419499436209906,0,0.417989933073621,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0.25326102332916,0.132409180813219,0,0,0,2.1349799145941,0,0,0.134710672069688,0.326923806226917,0,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340296549480063,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0.323292113637624,0,0,0,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0,0,0.245976877086227,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.46217006087397,0.234004265139238,3.41851673264075,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0.285955987316295,0,0,0,0.710783897485092,0,0.301439377059586,0.871533458600294,0.199945982364114,2.43247561282381,5.52482800575339,2.10833939483032,0.239624855491583,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0.206768026122887,0.647142602455851,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114814448164607,0,0.524497659837696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0,0,0,0,0,0.616067160352178,0,0,0,0,0,0,0.190630193923825,0,0.42793898803392,0.318203247925937,0,0,0.823611089208164,0.117812402345686,0,0,0,0,0,0,0,0.282810863907425,0,0,0,0,0,0,0.202910376962704,0,0.563391205064483,0.143411352204052,0.196498082026242,0,0,0,0.329294892959902,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0.144269212976445,0,0,0.399158742865633,0,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0.586032717087576,0,0,0,0.23874448473769,0,0,0,0.281338832821026,0,0,0,0.19924798825107,0.828851746593443,0,0,0.123084805461069,0,0,0,0.511572370226872,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0.442317039724898,0.295547618953547,0.219385397153973,0,0,0.615602068030377,0,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0.067401132980677,0,0.468528891450678,0.182454789215666,0,0.242780379534093,0,0,0.61214552326098,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,2.82419605412801,0,0.274083849293502,0,0.189932387867636,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27746588066972,0.859530882839914,0,1.11712960508902,0.458320848023367,0,0,0,0,0.0671834724867263,0,0,0.0787831823072236,0,0,0,0.423366660328922,0,0,0,0,0,0,0,0.0607495566580247,0,0.157611414598396,0.472091293214983,0,0,0,0.714695326373367,0,0,0,0,0.326587360109409,0,0,0,0,0,0,0.129282956361551,0.26446520348538,0,0,0.320362237703084,0.157204305099666,1.24271716604159,0,0.197611631897944,0.121792598380896,0,0,0.2506898940227,0,0,0,0,0.488105059607853,0.250381861413,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318593534327405,0,0.310525913752519,0,0,0,0.150257608997218,0.380805212168795,1.22061219961398,0.363697318405119,0.107410557042488,0.928067519756987,0,0.400027764663154,0,0,0,0,0,0,0,0.231522474323834,0,0,0.308801447160972,0,0.706756583783524,0.38582807654183,0,0,0,0,0,0,0,0,0,0,0,0.19998739585493,0,0.516644938982447,0,0,0,0,0.127894371303652,0.323474434190045,0.157265941855896,0.327628914576042,0,0.637724760305049,0,0,0.318004350653419,0,0,0,0,0,1.41696576325585,0,0.41023272848151,0.504143392443436,0.207471757392654,0.322951291263702,0,0,0,0,0,0,0,0.198916222116275,0.150420656698515,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.126831620387814,0,0,0.992422356778588,1.40696995487696,0,0,0,0,0,0.354809480650555,0.115233987555779,0,0.135939465953663,0,0,0,0.235479278551542,0,0,0,0,0,0.142953088353313,0.158013611732727,0,0,0,0,0,0,0,0.118332000730565,0.170426809518315,0.423387050190929,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0.0771741581079447,0.437119121007915,0,0.4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| |||
|short_description=p21@SYNE1 | |||
}} |
Revision as of 14:40, 22 January 2014
Short description: | p21@SYNE1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_21_at_SYNE1_5end |
Coexpression cluster: | NA |
Association with transcript: | -30bp_to_ENST00000489156_5end |
EntrezGene: | SYNE1 |
HGNC: | 17089 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage | 7.82e-36 | 6 |
defensive cell | 1.07e-31 | 48 |
phagocyte | 1.07e-31 | 48 |
granulocyte monocyte progenitor cell | 5.14e-25 | 67 |
monopoietic cell | 7.00e-25 | 59 |
monocyte | 7.00e-25 | 59 |
monoblast | 7.00e-25 | 59 |
promonocyte | 7.00e-25 | 59 |
macrophage dendritic cell progenitor | 5.31e-24 | 61 |
myeloid lineage restricted progenitor cell | 4.97e-22 | 66 |
myeloid leukocyte | 5.08e-20 | 72 |
myeloid cell | 1.28e-14 | 108 |
common myeloid progenitor | 1.28e-14 | 108 |
classical monocyte | 1.32e-14 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.32e-14 | 42 |
nongranular leukocyte | 1.44e-13 | 115 |
hematopoietic lineage restricted progenitor cell | 6.72e-13 | 120 |
leukocyte | 4.41e-11 | 136 |
hematopoietic oligopotent progenitor cell | 2.24e-10 | 161 |
hematopoietic multipotent progenitor cell | 2.24e-10 | 161 |
hematopoietic stem cell | 7.92e-10 | 168 |
hematopoietic cell | 3.47e-09 | 177 |
Ontology term | p-value | n |
---|---|---|
bone element | 4.97e-23 | 82 |
bone marrow | 8.67e-22 | 76 |
skeletal element | 9.23e-21 | 90 |
skeletal system | 1.98e-18 | 100 |
immune system | 2.25e-17 | 93 |
hematopoietic system | 2.31e-16 | 98 |
blood island | 2.31e-16 | 98 |
hemolymphoid system | 1.28e-14 | 108 |
musculoskeletal system | 6.00e-10 | 167 |
lower lobe of right lung | 1.48e-09 | 1 |
right lung lobe | 1.48e-09 | 1 |
lower lobe of lung | 1.48e-09 | 1 |
lobe of lung | 1.48e-09 | 1 |
right lung | 1.48e-09 | 1 |
mitral valve | 2.08e-09 | 1 |
lateral plate mesoderm | 7.48e-09 | 203 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 4.87e-10 | 1 |
extraosseous chondrosarcoma | 4.87e-10 | 1 |
myxoid chondrosarcoma | 4.87e-10 | 1 |
extraskeletal myxoid chondrosarcoma | 4.87e-10 | 1 |