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|located_in=
|located_in=
|name=internal ear
|name=internal ear
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0001690
|part_of=UBERON:0001690

Latest revision as of 17:21, 12 September 2014

Name:internal ear
Namespace:FANTOM
Definition:"Complex labyrinthine structure that comprises sensory endorgans specialized for vestibular, auditory, and acoustico-vestibular sensation." [PMID:16217737, Wikipedia:Internal_ear, ZFIN:curator]
Xrefs:
links:

AAO:0000238
BTO:0000630
EFO:0001363
EHDAA2:0000831
EHDAA:504
EMAPA:16194
EV:0100361
FMA:60909
GAID:871
galen:InnerEar
[ 200px-Gray923.png 200px-Gray923.png]
MA:0000237
MAT:0000145
MESH:A.09.246.631
MIAA:0000145
ncithesaurus:Internal_Ear
NIF_GrossAnatomy:birnlex_1196
OpenCyc:Mx4rwJ8SsJwpEbGdrcN5Y29ycA
SCTID:181189006
TAO:0000217
VHOG:0000284
XAO:0000192

ZFA:0000217
Synonyms: "auris interna" RELATED [BTO:0000630]
"inner ear" EXACT []
"labyrinth" RELATED []
"otocyst" RELATED []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_60909-MA_0000237-MIAA_0000145-XAO_0000192-ZFA_0000217
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000477(anatomical cluster),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest)
develops_from:UBERON:0003051(ear vesicle)
part_of:UBERON:0001690(ear)



Children

derives from:FF:0000256 (Inner ear stem cell (1st generation stem cell) sample),FF:0000257 (Inner ear stem cells (4th generation stem cells) sample),FF:0000258 (Inner ear stem cell (10 days differentiation) sample),FF:0000259 (Inner ear stem cell (3 days differentiation) sample)
part of:FF:0000256 (Inner ear stem cell (1st generation stem cell) sample),FF:0000257 (Inner ear stem cells (4th generation stem cells) sample),FF:0000258 (Inner ear stem cell (10 days differentiation) sample),FF:0000259 (Inner ear stem cell (3 days differentiation) sample),UBERON:0001839 (bony labyrinth),UBERON:0001849 (membranous labyrinth),UBERON:0004637 (otic capsule),UBERON:0010113 (future membranous labyrinth),UBERON:0010349 (otic capsule pre-cartilage condensation),UBERON:0010351 (otic capsule cartilage condensation)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001846 (internal ear), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_290235bc8c76f63330a2b730572b2dadp6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_290235bc8c76f63330a2b730572b2dadp@chr1:94627290..94627299, -
1.87e-86FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_290235bc8c76f63330a2b730572b2dadp@chr15:103146966..103146971, -
1.87e-86FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_290235bc8c76f63330a2b730572b2dadp@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_290235bc8c76f63330a2b730572b2dadp@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_290235bc8c76f63330a2b730572b2dadp@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr8:125802236..125802251,-#_290235bc8c76f63330a2b730572b2dadp3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_290235bc8c76f63330a2b730572b2dadp3@Strc
1.87e-86FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_290235bc8c76f63330a2b730572b2dadp4@uc007rhb.1
1.87e-86FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_290235bc8c76f63330a2b730572b2dadp2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_290235bc8c76f63330a2b730572b2dadp@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_290235bc8c76f63330a2b730572b2dadp@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_290235bc8c76f63330a2b730572b2dadp@chr14:31283085..31283097, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349392..107349413,-#_290235bc8c76f63330a2b730572b2dadp2@Otogl
1.87e-86FFCP PHASE1:Mm9::chr17:13983102..13983126,+#_290235bc8c76f63330a2b730572b2dadp@chr17:13983102..13983126, +
1.87e-86FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_290235bc8c76f63330a2b730572b2dadp@chr9:41495920..41495928, -
1.87e-86FFCP PHASE2:Mm9::chr4:133802857..133802884,+#_290235bc8c76f63330a2b730572b2dadp@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_290235bc8c76f63330a2b730572b2dadp@chr3:154459246..154459253, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_290235bc8c76f63330a2b730572b2dadp@chr15:89215306..89215315, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_290235bc8c76f63330a2b730572b2dadp3@Otogl
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_290235bc8c76f63330a2b730572b2dadp2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_290235bc8c76f63330a2b730572b2dadp@chr1:182528388..182528403, +
1.87e-86FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_290235bc8c76f63330a2b730572b2dadp@chr12:109905468..109905474, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_290235bc8c76f63330a2b730572b2dadp@chr16:93971325..93971337, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_290235bc8c76f63330a2b730572b2dadp@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_290235bc8c76f63330a2b730572b2dadp@chr1:78523144..78523177, +
1.87e-86FFCP PHASE1:Mm9::chr6:29428397..29428407,-#_290235bc8c76f63330a2b730572b2dadp@chr6:29428397..29428407, -
1.87e-86FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_290235bc8c76f63330a2b730572b2dadp1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr10:67371994..67372010,+#_290235bc8c76f63330a2b730572b2dadp@chr10:67371994..67372010, +
1.87e-86FFCP PHASE1:Mm9::chr4:63079735..63079745,-#_290235bc8c76f63330a2b730572b2dadp@chr4:63079735..63079745, -
1.87e-86FFCP PHASE2:Mm9::chr15:65641779..65641790,+#_290235bc8c76f63330a2b730572b2dadp@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_290235bc8c76f63330a2b730572b2dadp@chr11:8405038..8405048, -
1.87e-86FFCP PHASE1:Mm9::chr5:147854240..147854249,-#_290235bc8c76f63330a2b730572b2dadp@chr5:147854240..147854249, -
1.87e-86FFCP PHASE1:Mm9::chr18:42158627..42158630,-#_290235bc8c76f63330a2b730572b2dadp@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_290235bc8c76f63330a2b730572b2dadp@chr2:53464168..53464175, +
1.87e-86FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_290235bc8c76f63330a2b730572b2dadp@chr14:63099970..63099980, -
1.87e-86FFCP PHASE2:Mm9::chr8:13425469..13425503,+#_290235bc8c76f63330a2b730572b2dadp@chr8:13425469..13425503, +
1.87e-86FFCP PHASE2:Mm9::chr10:80806020..80806031,-#_290235bc8c76f63330a2b730572b2dadp3@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr14:63099970..63099980,-#_290235bc8c76f63330a2b730572b2dadp@chr14:63099970..63099980, -
1.87e-86FFCP PHASE2:Mm9::chr19:10536767..10536777,-#_290235bc8c76f63330a2b730572b2dadp@chr19:10536767..10536777, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_290235bc8c76f63330a2b730572b2dadp2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_290235bc8c76f63330a2b730572b2dadp@chr8:13425469..13425503, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255289..55255299,+#_290235bc8c76f63330a2b730572b2dadp2@Tectb
1.87e-86FFCP PHASE2:Mm9::chr15:89215333..89215341,+#_290235bc8c76f63330a2b730572b2dadp@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_290235bc8c76f63330a2b730572b2dadp@chr3:31585340..31585360, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843796..172843799,-#_290235bc8c76f63330a2b730572b2dadp@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_290235bc8c76f63330a2b730572b2dadp9@Otof
1.87e-86FFCP PHASE1:Mm9::chr14:47293487..47293493,-#_290235bc8c76f63330a2b730572b2dadp@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_290235bc8c76f63330a2b730572b2dadp@chr12:77084875..77084885, +
1.87e-86FFCP PHASE2:Mm9::chr15:97806034..97806061,+#_290235bc8c76f63330a2b730572b2dadp@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_290235bc8c76f63330a2b730572b2dadp@chr14:20649897..20649907, +
1.87e-86FFCP PHASE2:Mm9::chr10:108316802..108316807,-#_290235bc8c76f63330a2b730572b2dadp@chr10:108316802..108316807, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251606..113251613,+#_290235bc8c76f63330a2b730572b2dadp@chr6:113251606..113251613, +
1.87e-86FFCP PHASE1:Mm9::chr4:130461150..130461185,+#_290235bc8c76f63330a2b730572b2dadp@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr1:93235228..93235249,+#_290235bc8c76f63330a2b730572b2dadp@chr1:93235228..93235249, +
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_290235bc8c76f63330a2b730572b2dadp@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr9:42206730..42206739,-#_290235bc8c76f63330a2b730572b2dadp@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_290235bc8c76f63330a2b730572b2dadp15@Mctp1
1.87e-86FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_290235bc8c76f63330a2b730572b2dadp3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_290235bc8c76f63330a2b730572b2dadp@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_290235bc8c76f63330a2b730572b2dadp@chr3:35012397..35012405, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_290235bc8c76f63330a2b730572b2dadp3@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_290235bc8c76f63330a2b730572b2dadp@chr17:13983102..13983126, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_290235bc8c76f63330a2b730572b2dadp2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_290235bc8c76f63330a2b730572b2dadp@chr7:29733825..29733837, -
1.87e-86FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_290235bc8c76f63330a2b730572b2dadp@chr11:4689776..4689785, -
1.87e-86FFCP PHASE2:Mm9::chr4:154208086..154208123,+#_290235bc8c76f63330a2b730572b2dadp@chr4:154208086..154208123, +
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_290235bc8c76f63330a2b730572b2dadp@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_290235bc8c76f63330a2b730572b2dadp@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr6:113251614..113251623,+#_290235bc8c76f63330a2b730572b2dadp@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_290235bc8c76f63330a2b730572b2dadp4@Otogl
1.87e-86FFCP PHASE2:Mm9::chr13:78257454..78257465,+#_290235bc8c76f63330a2b730572b2dadp@chr13:78257454..78257465, +
1.87e-86FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_290235bc8c76f63330a2b730572b2dadp@chr13:48087761..48087775, -
1.87e-86FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_290235bc8c76f63330a2b730572b2dadp1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_290235bc8c76f63330a2b730572b2dadp@chr2:152453066..152453075, -
1.87e-86FFCP PHASE2:Mm9::chr3:69811606..69811616,+#_290235bc8c76f63330a2b730572b2dadp2@Otol1
1.87e-86FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_290235bc8c76f63330a2b730572b2dadp@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr4:101908153..101908163,+#_290235bc8c76f63330a2b730572b2dadp@chr4:101908153..101908163, +
1.87e-86FFCP PHASE1:Mm9::chr16:45693840..45693856,-#_290235bc8c76f63330a2b730572b2dadp1@Tmprss7
1.87e-86FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_290235bc8c76f63330a2b730572b2dadp@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_290235bc8c76f63330a2b730572b2dadp@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_290235bc8c76f63330a2b730572b2dadp@chr12:77084875..77084885, +
1.87e-86FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_290235bc8c76f63330a2b730572b2dadp@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr1:63733478..63733491,-#_290235bc8c76f63330a2b730572b2dadp1@Dytn
1.87e-86FFCP PHASE2:Mm9::chr1:93218682..93218691,+#_290235bc8c76f63330a2b730572b2dadp2@Espnl
1.87e-86FFCP PHASE2:Mm9::chr18:38104702..38104718,-#_290235bc8c76f63330a2b730572b2dadp@chr18:38104702..38104718, -
1.87e-86FFCP PHASE1:Mm9::chr3:106986057..106986062,+#_290235bc8c76f63330a2b730572b2dadp1@Kcna10
1.87e-86FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_290235bc8c76f63330a2b730572b2dadp@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_290235bc8c76f63330a2b730572b2dadp4@Tecta
1.87e-86FFCP PHASE1:Mm9::chr6:86746562..86746579,-#_290235bc8c76f63330a2b730572b2dadp@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr1:63733478..63733491,-#_290235bc8c76f63330a2b730572b2dadp1@Dytn
1.87e-86FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_290235bc8c76f63330a2b730572b2dadp@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr3:69811606..69811616,+#_290235bc8c76f63330a2b730572b2dadp2@Otol1
1.87e-86FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_290235bc8c76f63330a2b730572b2dadp7@Pkn3
1.87e-86FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_290235bc8c76f63330a2b730572b2dadp@chr17:27252925..27252939, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_290235bc8c76f63330a2b730572b2dadp1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_290235bc8c76f63330a2b730572b2dadp@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_290235bc8c76f63330a2b730572b2dadp4@Tecta
1.87e-86FFCP PHASE2:Mm9::chr6:86745686..86745727,-#_290235bc8c76f63330a2b730572b2dadp@chr6:86745686..86745727, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_290235bc8c76f63330a2b730572b2dadp@chr9:42207697..42207705, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "The auditory (hearing) and vestibular (balance) organ of the fish, equivalent to the inner ear of amniotes. (See Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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