Personal tools

UBERON:0006293: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
Line 13: Line 13:
|located_in=
|located_in=
|name=spleen primordium
|name=spleen primordium
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0005602
|part_of=UBERON:0005602

Latest revision as of 17:57, 12 September 2014

Name:spleen primordium
Namespace:FANTOM
Definition:"A dense syncitial-like mesenchymal thickening in the dorsal mesogastrium." [ISBN:0123747295]
Xrefs:
links:

EHDAA2:0001904
EHDAA:3003
EMAPA:18535
EMAPA:18659

XAO:0000326
Synonyms: "left spleen primordium" NARROW [XAO:0000326]
"splenic primordium" EXACT [EHDAA2:0001904]
Comments:todo - check difference between splenic and spleen in EMAPA

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001048(primordium),UBERON:0003104(mesenchyme),UBERON:0004120(mesoderm-derived structure),UBERON:0005291(embryonic tissue)
develops_from:UBERON:0004872(splanchnic layer of lateral plate mesoderm)
part_of:UBERON:0005602(dorsal mesogastrium)



Children

develops from:UBERON:0002106 (spleen)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006293 (spleen primordium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.98e-131FFCP PHASE2:Hg19::chr6:119812455..119812476,-#_0e30c25bb3d58f10fd534c9d86c10a80p1@uc003pyn.1
8.98e-131FFCP PHASE1:Hg19::chr9:79894790..79894797,+#_0e30c25bb3d58f10fd534c9d86c10a80p10@VPS13A
8.98e-131FFCP PHASE1:Hg19::chr4:76901930..76901942,+#_0e30c25bb3d58f10fd534c9d86c10a80p1@ENST00000501239
8.98e-131FFCP PHASE1:Hg19::chr10:98014908..98014919,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr10:98014908..98014919, -
8.98e-131FFCP PHASE1:Hg19::chr11:56859608..56859619,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr11:56859608..56859619, -
8.98e-131FFCP PHASE2:Hg19::chr10:98014908..98014919,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr10:98014908..98014919, -
8.98e-131FFCP PHASE1:Hg19::chr8:22436248..22436259,+#_0e30c25bb3d58f10fd534c9d86c10a80p11@PDLIM2
8.98e-131FFCP PHASE1:Hg19::chr1:159172187..159172197,-#_0e30c25bb3d58f10fd534c9d86c10a80p1@uc001ftm.1
8.98e-131FFCP PHASE2:Hg19::chr11:56859608..56859619,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr11:56859608..56859619, -
8.98e-131FFCP PHASE1:Hg19::chr9:127269434..127269438,-#_0e30c25bb3d58f10fd534c9d86c10a80p8@NR5A1
8.98e-131FFCP PHASE2:Hg19::chr1:28520450..28520453,-#_0e30c25bb3d58f10fd534c9d86c10a80p21@PTAFR
8.98e-131FFCP PHASE1:Hg19::chr15:95561320..95561328,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr15:95561320..95561328, -
8.98e-131FFCP PHASE2:Hg19::chr8:22424709..22424716,-#_0e30c25bb3d58f10fd534c9d86c10a80p2@ENST00000517384
8.98e-131FFCP PHASE2:Hg19::chr1:157811772..157811796,-#_0e30c25bb3d58f10fd534c9d86c10a80p7@CD5L
8.98e-131FFCP PHASE1:Hg19::chr21:28820941..28820952,-#_0e30c25bb3d58f10fd534c9d86c10a80p2@ENST00000420186, p2@uc002ymh.2
8.98e-131FFCP PHASE2:Hg19::chr21:28820892..28820899,-#_0e30c25bb3d58f10fd534c9d86c10a80p4@ENST00000420186, p4@uc002ymh.2
8.98e-131FFCP PHASE1:Hg19::chr9:127260615..127260651,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr9:127260615..127260651, -
8.98e-131FFCP PHASE2:Hg19::chr16:84218794..84218800,+#_0e30c25bb3d58f10fd534c9d86c10a80p@chr16:84218794..84218800, +
8.98e-131FFCP PHASE1:Hg19::chr6:152639579..152639586,-#_0e30c25bb3d58f10fd534c9d86c10a80p60@SYNE1
8.98e-131FFCP PHASE1:Hg19::chr10:98014943..98014960,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr10:98014943..98014960, -
8.98e-131FFCP PHASE1:Hg19::chr11:56859638..56859643,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr11:56859638..56859643, -
8.98e-131FFCP PHASE2:Hg19::chr10:98014943..98014960,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr10:98014943..98014960, -
8.98e-131FFCP PHASE1:Hg19::chr14:75904485..75904519,+#_0e30c25bb3d58f10fd534c9d86c10a80p12@JDP2
8.98e-131FFCP PHASE1:Hg19::chr9:133973310..133973321,+#_0e30c25bb3d58f10fd534c9d86c10a80p18@AIF1L
8.98e-131FFCP PHASE2:Hg19::chr15:95561320..95561328,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr15:95561320..95561328, -
8.98e-131FFCP PHASE2:Hg19::chr11:56859638..56859643,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr11:56859638..56859643, -
8.98e-131FFCP PHASE2:Hg19::chr19:32401253..32401271,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr19:32401253..32401271, -
8.98e-131FFCP PHASE1:Hg19::chr9:127269462..127269484,-#_0e30c25bb3d58f10fd534c9d86c10a80p2@NR5A1
8.98e-131FFCP PHASE1:Hg19::chr8:47834174..47834213,+#_0e30c25bb3d58f10fd534c9d86c10a80p1@ENST00000524012
8.98e-131FFCP PHASE1:Hg19::chr11:1891326..1891337,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr11:1891326..1891337, -
8.98e-131FFCP PHASE2:Hg19::chr8:22424743..22424759,-#_0e30c25bb3d58f10fd534c9d86c10a80p1@ENST00000517384
8.98e-131FFCP PHASE2:Hg19::chrX:69645652..69645664,+#_0e30c25bb3d58f10fd534c9d86c10a80p7@GDPD2
8.98e-131FFCP PHASE1:Hg19::chr21:28820954..28820963,-#_0e30c25bb3d58f10fd534c9d86c10a80p3@ENST00000420186, p3@uc002ymh.2
8.98e-131FFCP PHASE2:Hg19::chr11:1891326..1891337,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr11:1891326..1891337, -
8.98e-131FFCP PHASE2:Hg19::chr21:28820911..28820933,-#_0e30c25bb3d58f10fd534c9d86c10a80p1@ENST00000420186, p1@uc002ymh.2
8.98e-131FFCP PHASE2:Hg19::chr11:925449..925458,+#_0e30c25bb3d58f10fd534c9d86c10a80p17@AP2A2
8.98e-131FFCP PHASE2:Hg19::chr9:127269434..127269438,-#_0e30c25bb3d58f10fd534c9d86c10a80p8@NR5A1
8.98e-131FFCP PHASE1:Hg19::chr6:119812455..119812476,-#_0e30c25bb3d58f10fd534c9d86c10a80p1@uc003pyn.1
8.98e-131FFCP PHASE2:Hg19::chr14:75904485..75904519,+#_0e30c25bb3d58f10fd534c9d86c10a80p12@JDP2
8.98e-131FFCP PHASE1:Hg19::chr11:56859693..56859701,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr11:56859693..56859701, -
8.98e-131FFCP PHASE1:Hg19::chr7:22259740..22259751,-#_0e30c25bb3d58f10fd534c9d86c10a80p19@RAPGEF5
8.98e-131FFCP PHASE2:Hg19::chr9:79894790..79894797,+#_0e30c25bb3d58f10fd534c9d86c10a80p10@VPS13A
8.98e-131FFCP PHASE2:Hg19::chr11:56859693..56859701,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr11:56859693..56859701, -
8.98e-131FFCP PHASE1:Hg19::chr9:127269488..127269495,-#_0e30c25bb3d58f10fd534c9d86c10a80p5@NR5A1
8.98e-131FFCP PHASE2:Hg19::chr4:76901930..76901942,+#_0e30c25bb3d58f10fd534c9d86c10a80p1@ENST00000501239
8.98e-131FFCP PHASE2:Hg19::chr9:127260615..127260651,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr9:127260615..127260651, -
8.98e-131FFCP PHASE2:Hg19::chr8:22436248..22436259,+#_0e30c25bb3d58f10fd534c9d86c10a80p11@PDLIM2
8.98e-131FFCP PHASE1:Hg19::chr9:124516729..124516752,+#_0e30c25bb3d58f10fd534c9d86c10a80p@chr9:124516729..124516752, +
8.98e-131FFCP PHASE2:Hg19::chr1:159172187..159172197,-#_0e30c25bb3d58f10fd534c9d86c10a80p1@uc001ftm.1
8.98e-131FFCP PHASE1:Hg19::chr1:28520450..28520453,-#_0e30c25bb3d58f10fd534c9d86c10a80p21@PTAFR
8.98e-131FFCP PHASE1:Hg19::chr11:56859584..56859589,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr11:56859584..56859589, -
8.98e-131FFCP PHASE2:Hg19::chr9:133973310..133973321,+#_0e30c25bb3d58f10fd534c9d86c10a80p18@AIF1L
8.98e-131FFCP PHASE2:Hg19::chr21:28820941..28820952,-#_0e30c25bb3d58f10fd534c9d86c10a80p2@ENST00000420186, p2@uc002ymh.2
8.98e-131FFCP PHASE1:Hg19::chr8:22424709..22424716,-#_0e30c25bb3d58f10fd534c9d86c10a80p2@ENST00000517384
8.98e-131FFCP PHASE2:Hg19::chr17:78171885..78171900,+#_0e30c25bb3d58f10fd534c9d86c10a80p@chr17:78171885..78171900, +
8.98e-131FFCP PHASE1:Hg19::chr1:157811772..157811796,-#_0e30c25bb3d58f10fd534c9d86c10a80p7@CD5L
8.98e-131FFCP PHASE2:Hg19::chr11:56859584..56859589,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr11:56859584..56859589, -
8.98e-131FFCP PHASE2:Hg19::chr9:127269462..127269484,-#_0e30c25bb3d58f10fd534c9d86c10a80p2@NR5A1
8.98e-131FFCP PHASE1:Hg19::chr16:84218794..84218800,+#_0e30c25bb3d58f10fd534c9d86c10a80p@chr16:84218794..84218800, +
8.98e-131FFCP PHASE1:Hg19::chr21:28820892..28820899,-#_0e30c25bb3d58f10fd534c9d86c10a80p4@ENST00000420186, p4@uc002ymh.2
8.98e-131FFCP PHASE2:Hg19::chr6:152639579..152639586,-#_0e30c25bb3d58f10fd534c9d86c10a80p60@SYNE1
8.98e-131FFCP PHASE1:Hg19::chr11:925449..925458,+#_0e30c25bb3d58f10fd534c9d86c10a80p17@AP2A2
8.98e-131FFCP PHASE1:Hg19::chr19:32401253..32401271,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr19:32401253..32401271, -
8.98e-131FFCP PHASE2:Hg19::chr8:47834174..47834213,+#_0e30c25bb3d58f10fd534c9d86c10a80p1@ENST00000524012
8.98e-131FFCP PHASE2:Hg19::chr7:22259740..22259751,-#_0e30c25bb3d58f10fd534c9d86c10a80p19@RAPGEF5
8.98e-131FFCP PHASE1:Hg19::chr11:56859603..56859606,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr11:56859603..56859606, -
8.98e-131FFCP PHASE2:Hg19::chr21:28820954..28820963,-#_0e30c25bb3d58f10fd534c9d86c10a80p3@ENST00000420186, p3@uc002ymh.2
8.98e-131FFCP PHASE1:Hg19::chr8:22424743..22424759,-#_0e30c25bb3d58f10fd534c9d86c10a80p1@ENST00000517384
8.98e-131FFCP PHASE1:Hg19::chrX:69645652..69645664,+#_0e30c25bb3d58f10fd534c9d86c10a80p7@GDPD2
8.98e-131FFCP PHASE2:Hg19::chr11:56859603..56859606,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr11:56859603..56859606, -
8.98e-131FFCP PHASE2:Hg19::chr9:127269488..127269495,-#_0e30c25bb3d58f10fd534c9d86c10a80p5@NR5A1
8.98e-131FFCP PHASE2:Hg19::chr9:124516729..124516752,+#_0e30c25bb3d58f10fd534c9d86c10a80p@chr9:124516729..124516752, +
8.98e-131FFCP PHASE1:Hg19::chr21:28820911..28820933,-#_0e30c25bb3d58f10fd534c9d86c10a80p1@ENST00000420186, p1@uc002ymh.2
8.98e-131FFCP PHASE1:Hg19::chr17:78171885..78171900,+#_0e30c25bb3d58f10fd534c9d86c10a80p@chr17:78171885..78171900, +
6.24e-88FFCP PHASE1:Hg19::chr1:21011608..21011618,-#_1d76352b9050b2f1d5f80fc9d2a7334dp15@KIF17
6.24e-88FFCP PHASE2:Hg19::chr22:36718586..36718593,-#_1d76352b9050b2f1d5f80fc9d2a7334dp@chr22:36718586..36718593, -
6.24e-88FFCP PHASE1:Hg19::chr19:32401274..32401289,-#_1d76352b9050b2f1d5f80fc9d2a7334dp@chr19:32401274..32401289, -
6.24e-88FFCP PHASE2:Hg19::chr9:127267367..127267383,+#_1d76352b9050b2f1d5f80fc9d2a7334dp@chr9:127267367..127267383, +
6.24e-88FFCP PHASE1:Hg19::chr21:40459334..40459341,+#_1d76352b9050b2f1d5f80fc9d2a7334dp@chr21:40459334..40459341, +
6.24e-88FFCP PHASE2:Hg19::chr4:146461014..146461025,+#_1d76352b9050b2f1d5f80fc9d2a7334dp@chr4:146461014..146461025, +
6.24e-88FFCP PHASE2:Hg19::chr3:130267501..130267516,+#_1d76352b9050b2f1d5f80fc9d2a7334dp@chr3:130267501..130267516, +
6.24e-88FFCP PHASE2:Hg19::chr1:21011608..21011618,-#_1d76352b9050b2f1d5f80fc9d2a7334dp15@KIF17
6.24e-88FFCP PHASE2:Hg19::chr19:32401274..32401289,-#_1d76352b9050b2f1d5f80fc9d2a7334dp@chr19:32401274..32401289, -
6.24e-88FFCP PHASE1:Hg19::chr22:36718586..36718593,-#_1d76352b9050b2f1d5f80fc9d2a7334dp@chr22:36718586..36718593, -
6.24e-88FFCP PHASE1:Hg19::chr11:56859722..56859732,-#_1d76352b9050b2f1d5f80fc9d2a7334dp@chr11:56859722..56859732, -
6.24e-88FFCP PHASE2:Hg19::chr21:40459334..40459341,+#_1d76352b9050b2f1d5f80fc9d2a7334dp@chr21:40459334..40459341, +
6.24e-88FFCP PHASE2:Hg19::chr11:56859722..56859732,-#_1d76352b9050b2f1d5f80fc9d2a7334dp@chr11:56859722..56859732, -
6.24e-88FFCP PHASE1:Hg19::chr4:146461014..146461025,+#_1d76352b9050b2f1d5f80fc9d2a7334dp@chr4:146461014..146461025, +
6.24e-88FFCP PHASE1:Hg19::chr3:130267501..130267516,+#_1d76352b9050b2f1d5f80fc9d2a7334dp@chr3:130267501..130267516, +
6.24e-88FFCP PHASE1:Hg19::chr9:127267367..127267383,+#_1d76352b9050b2f1d5f80fc9d2a7334dp@chr9:127267367..127267383, +
9.74e-88FFCP PHASE2:Hg19::chr2:1508349..1508357,+#_9e0dab7a036b6ea811038be7b655f29fp@chr2:1508349..1508357, +
9.74e-88FFCP PHASE1:Hg19::chr7:151070957..151070988,+#_9e0dab7a036b6ea811038be7b655f29fp@chr7:151070957..151070988, +
9.74e-88FFCP PHASE1:Hg19::chr2:128321491..128321509,+#_9e0dab7a036b6ea811038be7b655f29fp@chr2:128321491..128321509, +
9.74e-88FFCP PHASE2:Hg19::chr16:70680361..70680370,+#_9e0dab7a036b6ea811038be7b655f29fp6@IL34
9.74e-88FFCP PHASE1:Hg19::chr12:72481040..72481051,+#_9e0dab7a036b6ea811038be7b655f29fp19@TRHDE
9.74e-88FFCP PHASE1:Hg19::chr14:24168655..24168686,+#_9e0dab7a036b6ea811038be7b655f29fp@chr14:24168655..24168686, +
9.74e-88FFCP PHASE1:Hg19::chr2:1508349..1508357,+#_9e0dab7a036b6ea811038be7b655f29fp@chr2:1508349..1508357, +
9.74e-88FFCP PHASE2:Hg19::chr12:72481040..72481051,+#_9e0dab7a036b6ea811038be7b655f29fp19@TRHDE
9.74e-88FFCP PHASE2:Hg19::chr2:128321491..128321509,+#_9e0dab7a036b6ea811038be7b655f29fp@chr2:128321491..128321509, +
9.74e-88FFCP PHASE1:Hg19::chr16:70680361..70680370,+#_9e0dab7a036b6ea811038be7b655f29fp6@IL34

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0006293&oldid=3277840"