FFCP PHASE1:Hg19::chr12:6809543..6809596,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=196500 | |EntrezGene=entrezgene:196500 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=25338 | |HGNC=HGNC:25338 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt=A8K0T3,Q8IYJ0 | |UniProt=uniprot:A8K0T3,uniprot:Q8IYJ0 | ||
|association_with_transcript=0bp_to_ENST00000540656,NM_001244015_5end | |association_with_transcript=0bp_to_ENST00000540656,NM_001244015_5end | ||
|cluster_id=chr12:6809543..6809596,- | |||
|coexpression_cluster_id=C3 | |coexpression_cluster_id=C3 | ||
|description=CAGE_peak_4_at_C12orf53_5end | |description=CAGE_peak_4_at_C12orf53_5end | ||
Revision as of 11:38, 24 July 2015
| Short description: | p4@C12orf53 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_4_at_C12orf53_5end |
| Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
| Association with transcript: | 0bp_to_ENST00000540656, NM_001244015_5end |
| EntrezGene: | 196500 |
| HGNC: | 25338 |
| UniProt: | A8K0T3Q8IYJ0 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p4@C12orf53 |
|---|
0
1
2
3
4
5
6
7
8
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| vascular associated smooth muscle cell | 6.20e-10 | 32 |
| smooth muscle cell | 1.36e-07 | 43 |
| smooth muscle myoblast | 1.36e-07 | 43 |
Showing 1 to 3 of 3 entries
| Ontology term | p-value | n |
|---|---|---|
| regional part of nervous system | 9.42e-52 | 53 |
| regional part of brain | 9.42e-52 | 53 |
| neural tube | 5.02e-51 | 56 |
| neural rod | 5.02e-51 | 56 |
| future spinal cord | 5.02e-51 | 56 |
| neural keel | 5.02e-51 | 56 |
| regional part of forebrain | 6.60e-48 | 41 |
| forebrain | 6.60e-48 | 41 |
| anterior neural tube | 6.60e-48 | 41 |
| future forebrain | 6.60e-48 | 41 |
Showing 1 to 10 of 73 entries
