FFCP PHASE1:Mm9::chr14:105988749..105988763,+: Difference between revisions
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{{FFCP|EntrezGene=|HGNC=|MCL_coexpression_id=263|UniProt=|association_with_transcript=-2bp_to_uc007uxu.2,uc011zpn.1,uc011zpo.1,uc011zpp.1,uc011zpq.1_5end|description=CAGE_peak_1_at_uc007uxu.2_5end,CAGE_peak_1_at_uc011zpn.1_5end,CAGE_peak_1_at_uc011zpo.1_5end,CAGE_peak_1_at_uc011zpp.1_5end,CAGE_peak_1_at_uc011zpq.1_5end|id=chr14:105988749..105988763,+|ontology_enrichment_celltype=CL:0000221!4.34e-09!44;CL:0000133!4.34e-09!44;CL:0000107!1.37e-08!9;CL:0002319!1.64e-08!43;CL:0000055!2.12e-07!50|ontology_enrichment_celltype_v019_2=CL:0000107,1.17e-17,9;CL:0000221,6.01e-12,44;CL:0000133,6.01e-12,44;CL:0002319,7.25e-11,43;CL:0000540,6.71e-08,33;CL:0000047,6.71e-08,33;CL:0000031,6.71e-08,33;CL:0000404,6.71e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!7.42e-11!75;UBERON:0001016!7.42e-11!75;UBERON:0000010!3.47e-10!11;UBERON:0001017!1.02e-09!73;UBERON:0005743!1.02e-09!73;UBERON:0004121!1.02e-09!102;UBERON:0000924!1.02e-09!102;UBERON:0006601!1.02e-09!102;UBERON:0007100!2.49e-09!18;UBERON:0000948!2.49e-09!18;UBERON:0005498!2.49e-09!18;UBERON:0004140!2.49e-09!18;UBERON:0009881!2.49e-09!18;UBERON:0004141!2.49e-09!18;UBERON:0003084!2.49e-09!18;UBERON:0007005!2.49e-09!18;UBERON:0004139!2.49e-09!18;UBERON:0004291!2.49e-09!18;UBERON:0002410!1.37e-08!9;UBERON:0004535!1.76e-08!23;UBERON:0001009!1.76e-08!23;UBERON:0003103!5.94e-07!43|ontology_enrichment_uberon_v019_2=UBERON:0000010,2.57e-21,11;UBERON:0007100,3.95e-19,18;UBERON:0000948,3.95e-19,18;UBERON:0005498,3.95e-19,18;UBERON:0004140,3.95e-19,18;UBERON:0009881,3.95e-19,18;UBERON:0004141,3.95e-19,18;UBERON:0003084,3.95e-19,18;UBERON:0007005,3.95e-19,18;UBERON:0004139,3.95e-19,18;UBERON:0004291,3.95e-19,18;UBERON:0002410,1.17e-17,9;UBERON:0004535,3.68e-16,23;UBERON:0001009,3.68e-16,23;UBERON:0010314,1.51e-11,92;UBERON:0001016,1.22e-10,75;UBERON:0004872,5.32e-10,33;UBERON:0003103,6.46e-10,43;UBERON:0001017,7.26e-09,73;UBERON:0004121,1.37e-08,95;UBERON:0000924,1.37e-08,95;UBERON:0006601,1.37e-08,95;UBERON:0004111,1.27e-07,122;UBERON:0003076,1.66e-07,12;UBERON:0003057,1.66e-07,12;UBERON:0000025,3.80e-07,114;UBERON:0010313,5.44e-07,3;UBERON:0002342,5.44e-07,3;UBERON:0002005,5.44e-07,3;UBERON:0005428,5.44e-07,3;UBERON:0005062,5.44e-07,3;UBERON:0000013,6.46e-07,3;UBERON:0000011,6.46e-07,3|phase1_expression=1.92178616525753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.304130793658544,0.367093504323363,0,1.09012578190223,0.219686182734472,0,0.55994568650145,4.31257693094915,0,0,0,0,0.573066879877513,0,0.202316460859598,0,0,0,0,0,0,0,1.19840044207362,0.768436610643109,0,0,0,1.14260393761521,0.662605622854841,0,0,0,1.10115880999389,0.766124028511126,0.307213066512487,0,0.457438218012048,0,0.837548997004143,0.56276261003168,0.916789486660861,1.76777151284201,1.13897344639282,0.745597783301202,44.2240969065795,8.84187253249391,0,0,0,0,0,0,0.280888840263504,0.852151612890289,0.779358013808606,0.35333957451034,4.78867627240714,0,0,0,0,0,0,0,0.258937883647172,0.148442139064825,0,0.304465478312141,0,0,0.117588707135705,0,0.247194967734374,1.73519228303894,0,0.647067399789637,0.220841518460394,0,1.86391761218122,3.51336956413857,4.1889341362691,0,0,0,0,0.748953197024114,0.915001205637253,0.251308704225729,0.347648640384553,0.511430914660661,0.83115217823824,0.162241263067758,0,0.373220911830279,0,0.210441855886474,0,0,0,0,0.0680364991513279,0.12811372028485,0,0.776110112217047,0,0,0,0.43839146485515,0.834141747676794,0.348252166522167,1.02891068203972,0,0,0,0,2.07125772535502,2.57978665979206,2.52086886045421,2.3674473558521,3.54175617145327,3.70241070929708,3.25547522650571,4.02410102099429,4.2035523252181,2.30383789878873,3.11918181750281,1.62137619091711,1.46199987425332,1.75640092232841,2.01309628140558,1.68231958851302,0,0,0,0.213288250535234,0.232236671860439,0,0.605050573870028,0.22237804384487,0,0.474529061544512,0,0.502670417600539,0.198956472041151,0,0,0,0.199141273254367,0,0.342745537829186,0,0.203651327845314,0,0.350679099451593,0.252946148497029,0.295220295959204,0.627994911365499,0.123397163921801,0,0,0,0,0,0,0,0.287696137450811,0,0,0,0,0,0,0,0,1.10851914099963,0,0.488894929326078,0.169745085775188,0.704070744865506,0.670025029767263,0.714130922658041,0.585400943573396,1.10344600874334,0.664394068946325,0.318909537314974,0.655453258862952,1.03610989119537,1.3018415272336,0,0,1.47529281905711,0.551873492609465,1.76605648986571,0.468846746368813,0,0.504941854408746,8.20321370482267,12.4940398174924,14.4333676480975,10.2756583119597,9.58034298554295,11.3230612315533,7.2865926301481,11.1057226006299,12.6492088942888,0.963963949265421,0.141940085208269,0,0,0,0,0,0,0,0,0.307435147943927,0.258428293168221,0,0,0,0,0,0,0,0,0,0.177340233642274,0,0,0,0,0.21183207086382,0,0.16488625294148,0,0.301564624640779,0.477489376012546,0.492422699235184,0,1.66882771809459,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0.406638934253697,0,0,0,0.269728692769641,0,0,0.259229946583586,0,0,0,0,0,0.129159823477731,0,0,0.2604087696879,0,0,0,0,0,0.205421914329655,0.129920822977795,0.179026695667481,0,0,0,0.100966449948148,0,0,0,0,0,0.226730383615211,0,0,0,0,0,0.183151624267265,0,0,0.564751842617067,0,1.14579102687879,0,0.685082519770642,0.755393897389701,1.35004500046361,0.45032120322422,1.35942722695261,0,0,0,0.341467211508268,0,0.209613162627982,0.183843508450014,0.222246727801615,0.412070114477788,0,0.252697211763798,0.50695859978048,0.377252682772152,0.187283014939765,0.192075457214608,0.402048282689293,0.952587382566147,0.115884325944855,0.192909220463705,0.412085900803307,0.294397840268795,0,0.354951612318675,0.238436189947321,0.290692833264657,0.188218760830661,0.169229215783353,0.548783918618318,0,0,0,0.237270036248348,0.29551344712669,0,0.309873682371932,0,0.249810577937946,0.467863216890817,0.644613162144895,1.53030665655075,1.10295709559758,1.62307484934295|short_description=p1@uc007uxu.2,p1@uc011zpn.1,p1@uc011zpo.1,p1@uc011zpp.1,p1@uc011zpq.1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene= | |||
|HGNC= | |||
|MCL_coexpression_id=263 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-2bp_to_uc007uxu.2,uc011zpn.1,uc011zpo.1,uc011zpp.1,uc011zpq.1_5end | |||
|cluster_id=chr14:105988749..105988763,+ | |||
|description=CAGE_peak_1_at_uc007uxu.2_5end,CAGE_peak_1_at_uc011zpn.1_5end,CAGE_peak_1_at_uc011zpo.1_5end,CAGE_peak_1_at_uc011zpp.1_5end,CAGE_peak_1_at_uc011zpq.1_5end | |||
|id=chr14:105988749..105988763,+ | |||
|ontology_enrichment_celltype=CL:0000221!4.34e-09!44;CL:0000133!4.34e-09!44;CL:0000107!1.37e-08!9;CL:0002319!1.64e-08!43;CL:0000055!2.12e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000107,1.17e-17,9;CL:0000221,6.01e-12,44;CL:0000133,6.01e-12,44;CL:0002319,7.25e-11,43;CL:0000540,6.71e-08,33;CL:0000047,6.71e-08,33;CL:0000031,6.71e-08,33;CL:0000404,6.71e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!7.42e-11!75;UBERON:0001016!7.42e-11!75;UBERON:0000010!3.47e-10!11;UBERON:0001017!1.02e-09!73;UBERON:0005743!1.02e-09!73;UBERON:0004121!1.02e-09!102;UBERON:0000924!1.02e-09!102;UBERON:0006601!1.02e-09!102;UBERON:0007100!2.49e-09!18;UBERON:0000948!2.49e-09!18;UBERON:0005498!2.49e-09!18;UBERON:0004140!2.49e-09!18;UBERON:0009881!2.49e-09!18;UBERON:0004141!2.49e-09!18;UBERON:0003084!2.49e-09!18;UBERON:0007005!2.49e-09!18;UBERON:0004139!2.49e-09!18;UBERON:0004291!2.49e-09!18;UBERON:0002410!1.37e-08!9;UBERON:0004535!1.76e-08!23;UBERON:0001009!1.76e-08!23;UBERON:0003103!5.94e-07!43 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000010,2.57e-21,11;UBERON:0007100,3.95e-19,18;UBERON:0000948,3.95e-19,18;UBERON:0005498,3.95e-19,18;UBERON:0004140,3.95e-19,18;UBERON:0009881,3.95e-19,18;UBERON:0004141,3.95e-19,18;UBERON:0003084,3.95e-19,18;UBERON:0007005,3.95e-19,18;UBERON:0004139,3.95e-19,18;UBERON:0004291,3.95e-19,18;UBERON:0002410,1.17e-17,9;UBERON:0004535,3.68e-16,23;UBERON:0001009,3.68e-16,23;UBERON:0010314,1.51e-11,92;UBERON:0001016,1.22e-10,75;UBERON:0004872,5.32e-10,33;UBERON:0003103,6.46e-10,43;UBERON:0001017,7.26e-09,73;UBERON:0004121,1.37e-08,95;UBERON:0000924,1.37e-08,95;UBERON:0006601,1.37e-08,95;UBERON:0004111,1.27e-07,122;UBERON:0003076,1.66e-07,12;UBERON:0003057,1.66e-07,12;UBERON:0000025,3.80e-07,114;UBERON:0010313,5.44e-07,3;UBERON:0002342,5.44e-07,3;UBERON:0002005,5.44e-07,3;UBERON:0005428,5.44e-07,3;UBERON:0005062,5.44e-07,3;UBERON:0000013,6.46e-07,3;UBERON:0000011,6.46e-07,3 | |||
|phase1_expression=1.92178616525753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.304130793658544,0.367093504323363,0,1.09012578190223,0.219686182734472,0,0.55994568650145,4.31257693094915,0,0,0,0,0.573066879877513,0,0.202316460859598,0,0,0,0,0,0,0,1.19840044207362,0.768436610643109,0,0,0,1.14260393761521,0.662605622854841,0,0,0,1.10115880999389,0.766124028511126,0.307213066512487,0,0.457438218012048,0,0.837548997004143,0.56276261003168,0.916789486660861,1.76777151284201,1.13897344639282,0.745597783301202,44.2240969065795,8.84187253249391,0,0,0,0,0,0,0.280888840263504,0.852151612890289,0.779358013808606,0.35333957451034,4.78867627240714,0,0,0,0,0,0,0,0.258937883647172,0.148442139064825,0,0.304465478312141,0,0,0.117588707135705,0,0.247194967734374,1.73519228303894,0,0.647067399789637,0.220841518460394,0,1.86391761218122,3.51336956413857,4.1889341362691,0,0,0,0,0.748953197024114,0.915001205637253,0.251308704225729,0.347648640384553,0.511430914660661,0.83115217823824,0.162241263067758,0,0.373220911830279,0,0.210441855886474,0,0,0,0,0.0680364991513279,0.12811372028485,0,0.776110112217047,0,0,0,0.43839146485515,0.834141747676794,0.348252166522167,1.02891068203972,0,0,0,0,2.07125772535502,2.57978665979206,2.52086886045421,2.3674473558521,3.54175617145327,3.70241070929708,3.25547522650571,4.02410102099429,4.2035523252181,2.30383789878873,3.11918181750281,1.62137619091711,1.46199987425332,1.75640092232841,2.01309628140558,1.68231958851302,0,0,0,0.213288250535234,0.232236671860439,0,0.605050573870028,0.22237804384487,0,0.474529061544512,0,0.502670417600539,0.198956472041151,0,0,0,0.199141273254367,0,0.342745537829186,0,0.203651327845314,0,0.350679099451593,0.252946148497029,0.295220295959204,0.627994911365499,0.123397163921801,0,0,0,0,0,0,0,0.287696137450811,0,0,0,0,0,0,0,0,1.10851914099963,0,0.488894929326078,0.169745085775188,0.704070744865506,0.670025029767263,0.714130922658041,0.585400943573396,1.10344600874334,0.664394068946325,0.318909537314974,0.655453258862952,1.03610989119537,1.3018415272336,0,0,1.47529281905711,0.551873492609465,1.76605648986571,0.468846746368813,0,0.504941854408746,8.20321370482267,12.4940398174924,14.4333676480975,10.2756583119597,9.58034298554295,11.3230612315533,7.2865926301481,11.1057226006299,12.6492088942888,0.963963949265421,0.141940085208269,0,0,0,0,0,0,0,0,0.307435147943927,0.258428293168221,0,0,0,0,0,0,0,0,0,0.177340233642274,0,0,0,0,0.21183207086382,0,0.16488625294148,0,0.301564624640779,0.477489376012546,0.492422699235184,0,1.66882771809459,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0.406638934253697,0,0,0,0.269728692769641,0,0,0.259229946583586,0,0,0,0,0,0.129159823477731,0,0,0.2604087696879,0,0,0,0,0,0.205421914329655,0.129920822977795,0.179026695667481,0,0,0,0.100966449948148,0,0,0,0,0,0.226730383615211,0,0,0,0,0,0.183151624267265,0,0,0.564751842617067,0,1.14579102687879,0,0.685082519770642,0.755393897389701,1.35004500046361,0.45032120322422,1.35942722695261,0,0,0,0.341467211508268,0,0.209613162627982,0.183843508450014,0.222246727801615,0.412070114477788,0,0.252697211763798,0.50695859978048,0.377252682772152,0.187283014939765,0.192075457214608,0.402048282689293,0.952587382566147,0.115884325944855,0.192909220463705,0.412085900803307,0.294397840268795,0,0.354951612318675,0.238436189947321,0.290692833264657,0.188218760830661,0.169229215783353,0.548783918618318,0,0,0,0.237270036248348,0.29551344712669,0,0.309873682371932,0,0.249810577937946,0.467863216890817,0.644613162144895,1.53030665655075,1.10295709559758,1.62307484934295 | |||
|short_description=p1@uc007uxu.2,p1@uc011zpn.1,p1@uc011zpo.1,p1@uc011zpp.1,p1@uc011zpq.1 | |||
}} |
Latest revision as of 22:54, 3 August 2015
Short description: | p1@uc007uxu.2, p1@uc011zpn.1, p1@uc011zpo.1, p1@uc011zpp.1, p1@uc011zpq.1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_uc007uxu.2_5end, CAGE_peak_1_at_uc011zpn.1_5end, CAGE_peak_1_at_uc011zpo.1_5end, CAGE_peak_1_at_uc011zpp.1_5end, CAGE_peak_1_at_uc011zpq.1_5end |
Coexpression cluster: | MCL_coexpression_mm9:263 |
Association with transcript: | -2bp_to_uc007uxu.2, uc011zpn.1, uc011zpo.1, uc011zpp.1, uc011zpq.1_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
autonomic neuron | 1.17e-17 | 9 |
ectodermal cell | 6.01e-12 | 44 |
neurectodermal cell | 6.01e-12 | 44 |
neural cell | 7.25e-11 | 43 |
neuron | 6.71e-08 | 33 |
neuronal stem cell | 6.71e-08 | 33 |
neuroblast | 6.71e-08 | 33 |
electrically signaling cell | 6.71e-08 | 33 |