FFCP PHASE2:Hg19::chr6:32609190..32609204,+: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:3117 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding |HGNC=HGNC:4942 |TSSclassifier=strong ...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=3117 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | ||
|HGNC= | |HGNC=4942 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=P01909 | ||
|association_with_transcript=104bp_to_L34086,L42625_5end | |association_with_transcript=104bp_to_L34086,L42625_5end | ||
|cluster_id=chr6:32609190..32609204,+ | |cluster_id=chr6:32609190..32609204,+ | ||
Latest revision as of 03:33, 18 September 2015
| Short description: | p18@HLA-DQA1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_18_at_HLA-DQA1_5end |
| Coexpression cluster: | C61_migratory_Dendritic_immature_Macrophage_xeroderma_cord_b |
| Association with transcript: | 104bp_to_L34086, L42625_5end |
| EntrezGene: | HLA-DQA1 |
| HGNC: | 4942 |
| UniProt: | P01909 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p18@HLA-DQA1 |
|---|
0.0
2.5
5.0
7.5
10.0
12.5
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| Langerhans cell | 4.62e-77 | 5 |
| conventional dendritic cell | 5.86e-43 | 8 |
| dendritic cell | 3.41e-35 | 10 |
| CD1a-positive Langerhans cell | 8.57e-32 | 2 |
| immature CD1a-positive Langerhans cell | 8.57e-32 | 2 |
| leukocyte | 5.43e-15 | 136 |
| myeloid cell | 3.73e-13 | 108 |
| common myeloid progenitor | 3.73e-13 | 108 |
| hematopoietic oligopotent progenitor cell | 1.65e-12 | 161 |
| hematopoietic multipotent progenitor cell | 1.65e-12 | 161 |
Showing 1 to 10 of 19 entries
| Ontology term | p-value | n |
|---|---|---|
| lower lobe of right lung | 1.04e-16 | 1 |
| right lung lobe | 1.04e-16 | 1 |
| lower lobe of lung | 1.04e-16 | 1 |
| lobe of lung | 1.04e-16 | 1 |
| right lung | 1.04e-16 | 1 |
| bone marrow | 2.96e-09 | 76 |
| bone element | 1.50e-08 | 82 |
| skeletal element | 9.39e-08 | 90 |
| immune system | 1.72e-07 | 93 |
| hematopoietic system | 4.38e-07 | 98 |
Showing 1 to 10 of 12 entries
| Ontology term | p-value | n |
|---|---|---|
| non-Hodgkin lymphoma | 2.25e-16 | 1 |
| cutaneous T cell lymphoma | 2.25e-16 | 1 |
| mycosis fungoides | 2.25e-16 | 1 |
Showing 1 to 3 of 3 entries
