FFCP PHASE2:Hg19::chr2:187454391..187454402,+: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:3685 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:6150 |TSSclass...") |
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| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=3685 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=6150 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=B4DYQ7,B7ZLX0,P06756 | ||
|association_with_transcript=-387bp_to_ENST00000544640,NM_001145000,NM_002210,uc002upq.2,uc010frs.2_5end | |association_with_transcript=-387bp_to_ENST00000544640,NM_001145000,NM_002210,uc002upq.2,uc010frs.2_5end | ||
|cluster_id=chr2:187454391..187454402,+ | |cluster_id=chr2:187454391..187454402,+ | ||
Latest revision as of 23:29, 18 September 2015
| Short description: | p8@ITGAV |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_8_at_ITGAV_5end |
| Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
| Association with transcript: | -387bp_to_ENST00000544640, NM_001145000, NM_002210, uc002upq.2, uc010frs.2_5end |
| EntrezGene: | ITGAV |
| HGNC: | 6150 |
| UniProt: | B4DYQ7B7ZLX0P06756 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p8@ITGAV |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| classical monocyte | 7.64e-21 | 42 |
| CD14-positive, CD16-negative classical monocyte | 7.64e-21 | 42 |
| defensive cell | 6.45e-18 | 48 |
| phagocyte | 6.45e-18 | 48 |
| monopoietic cell | 8.04e-14 | 59 |
| monocyte | 8.04e-14 | 59 |
| monoblast | 8.04e-14 | 59 |
| promonocyte | 8.04e-14 | 59 |
| macrophage dendritic cell progenitor | 2.71e-13 | 61 |
| myeloid lineage restricted progenitor cell | 4.12e-12 | 66 |
Showing 1 to 10 of 13 entries
| Ontology term | p-value | n |
|---|---|---|
| bone marrow | 3.27e-10 | 76 |
| retina | 8.31e-10 | 6 |
| photoreceptor array | 8.31e-10 | 6 |
| posterior segment of eyeball | 8.31e-10 | 6 |
| bone element | 2.71e-09 | 82 |
| skeletal element | 2.94e-08 | 90 |
| immune system | 6.45e-08 | 93 |
| hematopoietic system | 2.15e-07 | 98 |
| blood island | 2.15e-07 | 98 |
| tricuspid valve | 2.84e-07 | 1 |
Showing 1 to 10 of 23 entries
