FFCP PHASE2:Mm9::chr12:54349410..54349461,+: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=NA |DPIdataset=NA |EntrezGene=entrezgene:27386 |HGNC= |MCL_coexpression_id=13 |TSSclassifier=NA |UniProt=uniprot:Q0IJ77,uniprot:F8VQB2,uniprot:Q9QZQ0 |assoc...") |
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|DHSsupport=NA | |DHSsupport=NA | ||
|DPIdataset=NA | |DPIdataset=NA | ||
|EntrezGene= | |EntrezGene=27386 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=13 | |MCL_coexpression_id=13 | ||
|TSSclassifier=NA | |TSSclassifier=NA | ||
|UniProt= | |UniProt=Q0IJ77,F8VQB2,Q9QZQ0 | ||
|association_with_transcript=-202bp_to_ENSMUST00000021396,ENSMUST00000101432,NM_013780,uc007nno.1,uc007nnp.1_5end | |association_with_transcript=-202bp_to_ENSMUST00000021396,ENSMUST00000101432,NM_013780,uc007nno.1,uc007nnp.1_5end | ||
|cluster_id=chr12:54349410..54349461,+ | |cluster_id=chr12:54349410..54349461,+ | ||
Latest revision as of 16:07, 26 September 2015
| Short description: | p1@Npas3 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Npas3_5end |
| Coexpression cluster: | MCL_coexpression_mm9:13 |
| Association with transcript: | -202bp_to_ENSMUST00000021396, ENSMUST00000101432, NM_013780, uc007nno.1, uc007nnp.1_5end |
| EntrezGene: | Npas3 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p1@Npas3 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| CNS neuron (sensu Vertebrata) | 5.44e-20 | 23 |
| neuroblast (sensu Vertebrata) | 5.44e-20 | 23 |
| ectodermal cell | 5.14e-18 | 44 |
| neurectodermal cell | 5.14e-18 | 44 |
| neural cell | 1.79e-17 | 43 |
| neuron | 2.73e-14 | 33 |
| neuronal stem cell | 2.73e-14 | 33 |
| neuroblast | 2.73e-14 | 33 |
| electrically signaling cell | 2.73e-14 | 33 |
| electrically responsive cell | 6.49e-12 | 39 |
Showing 1 to 10 of 12 entries
| Ontology term | p-value | n |
|---|---|---|
| central nervous system | 1.78e-34 | 73 |
| nervous system | 7.45e-33 | 75 |
| regional part of nervous system | 7.74e-31 | 54 |
| neurectoderm | 1.84e-29 | 64 |
| neural plate | 1.84e-29 | 64 |
| presumptive neural plate | 1.84e-29 | 64 |
| neural tube | 3.38e-29 | 52 |
| neural rod | 3.38e-29 | 52 |
| future spinal cord | 3.38e-29 | 52 |
| neural keel | 3.38e-29 | 52 |
Showing 1 to 10 of 49 entries
