FFCP PHASE2:Mm9::chr3:34548946..34548972,+: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=NA |DPIdataset=NA |EntrezGene=entrezgene:20674 |HGNC= |MCL_coexpression_id=3407 |TSSclassifier=NA |UniProt=uniprot:Q60I23 |association_with_transcript=-4bp_...") |
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|DHSsupport=NA | |DHSsupport=NA | ||
|DPIdataset=NA | |DPIdataset=NA | ||
|EntrezGene= | |EntrezGene=20674 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=3407 | |MCL_coexpression_id=3407 | ||
|TSSclassifier=NA | |TSSclassifier=NA | ||
|UniProt= | |UniProt=Q60I23 | ||
|association_with_transcript=-4bp_to_ENSMUST00000169607_5end | |association_with_transcript=-4bp_to_ENSMUST00000169607_5end | ||
|cluster_id=chr3:34548946..34548972,+ | |cluster_id=chr3:34548946..34548972,+ | ||
Latest revision as of 23:14, 1 October 2015
| Short description: | p2@Sox2 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_2_at_Sox2_5end |
| Coexpression cluster: | MCL_coexpression_mm9:3407 |
| Association with transcript: | -4bp_to_ENSMUST00000169607_5end |
| EntrezGene: | Sox2 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p2@Sox2 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| ectodermal cell | 4.50e-30 | 44 |
| neurectodermal cell | 4.50e-30 | 44 |
| neural cell | 4.46e-29 | 43 |
| neuron | 3.15e-22 | 33 |
| neuronal stem cell | 3.15e-22 | 33 |
| neuroblast | 3.15e-22 | 33 |
| electrically signaling cell | 3.15e-22 | 33 |
| electrically responsive cell | 3.31e-17 | 39 |
| electrically active cell | 3.31e-17 | 39 |
| CNS neuron (sensu Vertebrata) | 3.23e-15 | 23 |
Showing 1 to 10 of 20 entries
| Ontology term | p-value | n |
|---|---|---|
| nervous system | 1.61e-47 | 75 |
| central nervous system | 2.52e-45 | 73 |
| ectoderm-derived structure | 7.56e-45 | 95 |
| ectoderm | 7.56e-45 | 95 |
| presumptive ectoderm | 7.56e-45 | 95 |
| neurectoderm | 3.53e-34 | 64 |
| neural plate | 3.53e-34 | 64 |
| presumptive neural plate | 3.53e-34 | 64 |
| ecto-epithelium | 8.92e-30 | 73 |
| regional part of nervous system | 1.01e-29 | 54 |
Showing 1 to 10 of 38 entries
