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UBERON:0005352

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Name:spermatic cord
Namespace:FANTOM
Definition:"the cord-like structure in males comprising the vas deferens and associated tissue that runs from the abdomen down to each testis[MP]. cord-like structure in males formed by the vas deferens and surrounding tissue that run from the abdomen down to each testicle[WP]." [MP:0010145, Wikipedia:Spermatic_cord]
Xrefs:
links:

FMA:19937
GAID:395
[ Male_anatomy.png Male_anatomy.png]
[ 200px-Male_anatomy.png 200px-Male_anatomy.png]
MESH:A.05.360.444.777
ncithesaurus:Spermatic_Cord

SCTID:181433005
Synonyms: "funiculus spermaticus" RELATED LATIN [Wikipedia:Spermatic_cord]
"spermatic chord" RELATED []

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000477(anatomical cluster),UBERON:0005156(reproductive structure),UBERON:0014403(male anatomical structure)
part_of:UBERON:0004054(internal male genitalia)



Children

part of:UBERON:0001000 (vas deferens)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005352 (spermatic cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.37e-99FFCP PHASE2:Hg19::chr11:1032745..1032750,-#_9de1ffac85834d2503c5453b631f0b46p@chr11:1032745..1032750, -
9.37e-99FFCP PHASE2:Hg19::chr19:15732081..15732088,+#_9de1ffac85834d2503c5453b631f0b46p@chr19:15732081..15732088, +
9.37e-99FFCP PHASE1:Hg19::chr20:43838343..43838355,+#_9de1ffac85834d2503c5453b631f0b46p@chr20:43838343..43838355, +
9.37e-99FFCP PHASE2:Hg19::chr12:126515178..126515204,+#_9de1ffac85834d2503c5453b631f0b46p@chr12:126515178..126515204, +
9.37e-99FFCP PHASE2:Hg19::chr20:43836329..43836334,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836329..43836334, -
9.37e-99FFCP PHASE1:Hg19::chr19:15732081..15732088,+#_9de1ffac85834d2503c5453b631f0b46p@chr19:15732081..15732088, +
9.37e-99FFCP PHASE2:Hg19::chr20:43836666..43836681,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836666..43836681, -
9.37e-99FFCP PHASE1:Hg19::chr20:43836544..43836571,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836544..43836571, -
9.37e-99FFCP PHASE2:Hg19::chr20:43838343..43838355,+#_9de1ffac85834d2503c5453b631f0b46p@chr20:43838343..43838355, +
9.37e-99FFCP PHASE1:Hg19::chr20:43836329..43836334,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836329..43836334, -
9.37e-99FFCP PHASE2:Hg19::chr1:25179461..25179463,+#_9de1ffac85834d2503c5453b631f0b46p@chr1:25179461..25179463, +
9.37e-99FFCP PHASE2:Hg19::chr10:25623518..25623540,-#_9de1ffac85834d2503c5453b631f0b46p@chr10:25623518..25623540, -
9.37e-99FFCP PHASE2:Hg19::chr20:43836486..43836506,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836486..43836506, -
9.37e-99FFCP PHASE1:Hg19::chr1:25179461..25179463,+#_9de1ffac85834d2503c5453b631f0b46p@chr1:25179461..25179463, +
9.37e-99FFCP PHASE1:Hg19::chr20:43836696..43836705,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836696..43836705, -
9.37e-99FFCP PHASE2:Hg19::chr20:43836544..43836571,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836544..43836571, -
9.37e-99FFCP PHASE2:Hg19::chr15:91849948..91849962,+#_9de1ffac85834d2503c5453b631f0b46p@chr15:91849948..91849962, +
9.37e-99FFCP PHASE2:Hg19::chr2:223648293..223648295,+#_9de1ffac85834d2503c5453b631f0b46p@chr2:223648293..223648295, +
9.37e-99FFCP PHASE2:Hg19::chr11:34592440..34592452,+#_9de1ffac85834d2503c5453b631f0b46p1@ENST00000527135
9.37e-99FFCP PHASE1:Hg19::chr20:43836486..43836506,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836486..43836506, -
9.37e-99FFCP PHASE1:Hg19::chr11:30182693..30182698,-#_9de1ffac85834d2503c5453b631f0b46p@chr11:30182693..30182698, -
9.37e-99FFCP PHASE2:Hg19::chrX:152622610..152622615,+#_9de1ffac85834d2503c5453b631f0b46p@chrX:152622610..152622615, +
9.37e-99FFCP PHASE1:Hg19::chr2:223648293..223648295,+#_9de1ffac85834d2503c5453b631f0b46p@chr2:223648293..223648295, +
9.37e-99FFCP PHASE1:Hg19::chr20:43836912..43836919,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836912..43836919, -
9.37e-99FFCP PHASE2:Hg19::chr20:43836696..43836705,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836696..43836705, -
9.37e-99FFCP PHASE2:Hg19::chr20:43836170..43836181,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836170..43836181, -
9.37e-99FFCP PHASE1:Hg19::chrX:152622610..152622615,+#_9de1ffac85834d2503c5453b631f0b46p@chrX:152622610..152622615, +
9.37e-99FFCP PHASE2:Hg19::chr1:26217127..26217131,+#_9de1ffac85834d2503c5453b631f0b46p@chr1:26217127..26217131, +
9.37e-99FFCP PHASE2:Hg19::chr20:43853005..43853012,+#_9de1ffac85834d2503c5453b631f0b46p@chr20:43853005..43853012, +
9.37e-99FFCP PHASE1:Hg19::chr20:43836170..43836181,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836170..43836181, -
9.37e-99FFCP PHASE1:Hg19::chr6:70856430..70856440,+#_9de1ffac85834d2503c5453b631f0b46p@chr6:70856430..70856440, +
9.37e-99FFCP PHASE2:Hg19::chr20:43836912..43836919,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836912..43836919, -
9.37e-99FFCP PHASE1:Hg19::chr1:26217127..26217131,+#_9de1ffac85834d2503c5453b631f0b46p@chr1:26217127..26217131, +
9.37e-99FFCP PHASE2:Hg19::chr20:43836267..43836284,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836267..43836284, -
9.37e-99FFCP PHASE1:Hg19::chr20:43853005..43853012,+#_9de1ffac85834d2503c5453b631f0b46p@chr20:43853005..43853012, +
9.37e-99FFCP PHASE2:Hg19::chr5:179511281..179511283,+#_9de1ffac85834d2503c5453b631f0b46p@chr5:179511281..179511283, +
9.37e-99FFCP PHASE2:Hg19::chr20:43836115..43836122,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836115..43836122, -
9.37e-99FFCP PHASE1:Hg19::chr10:25623518..25623540,-#_9de1ffac85834d2503c5453b631f0b46p@chr10:25623518..25623540, -
9.37e-99FFCP PHASE2:Hg19::chr2:18887940..18887947,+#_9de1ffac85834d2503c5453b631f0b46p@chr2:18887940..18887947, +
9.37e-99FFCP PHASE2:Hg19::chr11:30182693..30182698,-#_9de1ffac85834d2503c5453b631f0b46p@chr11:30182693..30182698, -
9.37e-99FFCP PHASE1:Hg19::chr20:43836267..43836284,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836267..43836284, -
9.37e-99FFCP PHASE1:Hg19::chr5:179511281..179511283,+#_9de1ffac85834d2503c5453b631f0b46p@chr5:179511281..179511283, +
9.37e-99FFCP PHASE1:Hg19::chr20:43836115..43836122,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836115..43836122, -
9.37e-99FFCP PHASE1:Hg19::chr2:18887940..18887947,+#_9de1ffac85834d2503c5453b631f0b46p@chr2:18887940..18887947, +
9.37e-99FFCP PHASE1:Hg19::chr20:43836620..43836625,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836620..43836625, -
9.37e-99FFCP PHASE2:Hg19::chr20:43836287..43836295,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836287..43836295, -
9.37e-99FFCP PHASE2:Hg19::chr20:43836620..43836625,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836620..43836625, -
9.37e-99FFCP PHASE1:Hg19::chr15:91849918..91849931,+#_9de1ffac85834d2503c5453b631f0b46p@chr15:91849918..91849931, +
9.37e-99FFCP PHASE1:Hg19::chr4:42942084..42942100,+#_9de1ffac85834d2503c5453b631f0b46p@chr4:42942084..42942100, +
9.37e-99FFCP PHASE2:Hg19::chr20:43835380..43835384,+#_9de1ffac85834d2503c5453b631f0b46p2@SEMG1, p3@SEMG2
9.37e-99FFCP PHASE1:Hg19::chr20:43836287..43836295,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836287..43836295, -
9.37e-99FFCP PHASE1:Hg19::chr20:43836942..43836962,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836942..43836962, -
9.37e-99FFCP PHASE2:Hg19::chr4:42942084..42942100,+#_9de1ffac85834d2503c5453b631f0b46p@chr4:42942084..42942100, +
9.37e-99FFCP PHASE2:Hg19::chr20:43836225..43836234,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836225..43836234, -
9.37e-99FFCP PHASE1:Hg19::chr20:43850505..43850516,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43850505..43850516, -
9.37e-99FFCP PHASE1:Hg19::chr20:43835380..43835384,+#_9de1ffac85834d2503c5453b631f0b46p2@SEMG1, p3@SEMG2
9.37e-99FFCP PHASE2:Hg19::chr20:43853046..43853053,+#_9de1ffac85834d2503c5453b631f0b46p@chr20:43853046..43853053, +
9.37e-99FFCP PHASE2:Hg19::chr19:15731989..15732000,+#_9de1ffac85834d2503c5453b631f0b46p@chr19:15731989..15732000, +
9.37e-99FFCP PHASE2:Hg19::chr2:219942197..219942226,+#_9de1ffac85834d2503c5453b631f0b46p@chr2:219942197..219942226, +
9.37e-99FFCP PHASE1:Hg19::chr20:43836225..43836234,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836225..43836234, -
9.37e-99FFCP PHASE2:Hg19::chr20:43836942..43836962,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836942..43836962, -
9.37e-99FFCP PHASE1:Hg19::chr20:43853046..43853053,+#_9de1ffac85834d2503c5453b631f0b46p@chr20:43853046..43853053, +
9.37e-99FFCP PHASE1:Hg19::chr20:43836771..43836789,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836771..43836789, -
9.37e-99FFCP PHASE1:Hg19::chr19:15731989..15732000,+#_9de1ffac85834d2503c5453b631f0b46p@chr19:15731989..15732000, +
9.37e-99FFCP PHASE2:Hg19::chr20:43850505..43850516,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43850505..43850516, -
9.37e-99FFCP PHASE1:Hg19::chr20:43836518..43836524,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836518..43836524, -
9.37e-99FFCP PHASE1:Hg19::chr15:91849948..91849962,+#_9de1ffac85834d2503c5453b631f0b46p@chr15:91849948..91849962, +
9.37e-99FFCP PHASE1:Hg19::chr2:219942197..219942226,+#_9de1ffac85834d2503c5453b631f0b46p@chr2:219942197..219942226, +
9.37e-99FFCP PHASE1:Hg19::chr12:126515178..126515204,+#_9de1ffac85834d2503c5453b631f0b46p@chr12:126515178..126515204, +
9.37e-99FFCP PHASE1:Hg19::chr11:1032745..1032750,-#_9de1ffac85834d2503c5453b631f0b46p@chr11:1032745..1032750, -
9.37e-99FFCP PHASE2:Hg19::chr6:70856430..70856440,+#_9de1ffac85834d2503c5453b631f0b46p@chr6:70856430..70856440, +
9.37e-99FFCP PHASE2:Hg19::chr20:43836771..43836789,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836771..43836789, -
9.37e-99FFCP PHASE1:Hg19::chr20:43836666..43836681,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836666..43836681, -
9.37e-99FFCP PHASE2:Hg19::chr20:43836518..43836524,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836518..43836524, -
9.37e-99FFCP PHASE1:Hg19::chr11:34592440..34592452,+#_9de1ffac85834d2503c5453b631f0b46p1@ENST00000527135
9.37e-99FFCP PHASE2:Hg19::chr15:91849918..91849931,+#_9de1ffac85834d2503c5453b631f0b46p@chr15:91849918..91849931, +
2.55e-98FFCP PHASE2:Hg19::chrX:16913211..16913222,+#_a119b360826d0139a70b53f038a638f2p@chrX:16913211..16913222, +
2.55e-98FFCP PHASE1:Hg19::chr20:43851326..43851348,+#_a119b360826d0139a70b53f038a638f2p@chr20:43851326..43851348, +
2.55e-98FFCP PHASE2:Hg19::chr20:43851110..43851138,+#_a119b360826d0139a70b53f038a638f2p@chr20:43851110..43851138, +
2.55e-98FFCP PHASE1:Hg19::chr20:43851758..43851791,+#_a119b360826d0139a70b53f038a638f2p@chr20:43851758..43851791, +
2.55e-98FFCP PHASE1:Hg19::chr19:15706318..15706336,+#_a119b360826d0139a70b53f038a638f2p@chr19:15706318..15706336, +
2.55e-98FFCP PHASE1:Hg19::chr21:47337358..47337375,+#_a119b360826d0139a70b53f038a638f2p@chr21:47337358..47337375, +
2.55e-98FFCP PHASE2:Hg19::chr10:102502483..102502493,+#_a119b360826d0139a70b53f038a638f2p@chr10:102502483..102502493, +
2.55e-98FFCP PHASE2:Hg19::chr20:43837317..43837329,+#_a119b360826d0139a70b53f038a638f2p@chr20:43837317..43837329, +
2.55e-98FFCP PHASE2:Hg19::chr20:123140..123152,+#_a119b360826d0139a70b53f038a638f2p3@DEFB126
2.55e-98FFCP PHASE2:Hg19::chr11:125657972..125657979,+#_a119b360826d0139a70b53f038a638f2p4@PATE3
2.55e-98FFCP PHASE1:Hg19::chr10:102505901..102505907,+#_a119b360826d0139a70b53f038a638f2p13@PAX2
2.55e-98FFCP PHASE2:Hg19::chr13:103347376..103347414,-#_a119b360826d0139a70b53f038a638f2p@chr13:103347376..103347414, -
2.55e-98FFCP PHASE2:Hg19::chr20:43851992..43851993,+#_a119b360826d0139a70b53f038a638f2p@chr20:43851992..43851993, +
2.55e-98FFCP PHASE2:Hg19::chr19:15728999..15729014,+#_a119b360826d0139a70b53f038a638f2p@chr19:15728999..15729014, +
2.55e-98FFCP PHASE1:Hg19::chr20:43850941..43850991,+#_a119b360826d0139a70b53f038a638f2p@chr20:43850941..43850991, +
2.55e-98FFCP PHASE2:Hg19::chr20:43851679..43851707,+#_a119b360826d0139a70b53f038a638f2p@chr20:43851679..43851707, +
2.55e-98FFCP PHASE1:Hg19::chr5:74191783..74191795,-#_a119b360826d0139a70b53f038a638f2p20@FAM169A
2.55e-98FFCP PHASE1:Hg19::chr11:1024905..1024910,-#_a119b360826d0139a70b53f038a638f2p@chr11:1024905..1024910, -
2.55e-98FFCP PHASE1:Hg19::chr20:123140..123152,+#_a119b360826d0139a70b53f038a638f2p3@DEFB126
2.55e-98FFCP PHASE1:Hg19::chr20:43850651..43850662,+#_a119b360826d0139a70b53f038a638f2p@chr20:43850651..43850662, +
2.55e-98FFCP PHASE2:Hg19::chr20:43850531..43850538,+#_a119b360826d0139a70b53f038a638f2p@chr20:43850531..43850538, +
2.55e-98FFCP PHASE1:Hg19::chrX:16913211..16913222,+#_a119b360826d0139a70b53f038a638f2p@chrX:16913211..16913222, +
2.55e-98FFCP PHASE2:Hg19::chr20:43851326..43851348,+#_a119b360826d0139a70b53f038a638f2p@chr20:43851326..43851348, +
2.55e-98FFCP PHASE2:Hg19::chr20:43836162..43836169,-#_a119b360826d0139a70b53f038a638f2p@chr20:43836162..43836169, -

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