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MCL coexpression mm9:224

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:79957600..79957618,+p1@Onecut3
Mm9::chr10:91627904..91627922,-p1@Rmst
Mm9::chr12:47821823..47821831,-p@chr12:47821823..47821831
-
Mm9::chr12:47919122..47919142,-p@chr12:47919122..47919142
-
Mm9::chr13:95587649..95587666,+p@chr13:95587649..95587666
+
Mm9::chr15:98918857..98918860,-p@chr15:98918857..98918860
-
Mm9::chr16:72027952..72027965,+p@chr16:72027952..72027965
+
Mm9::chr17:37182755..37182764,+p18@Gabbr1
Mm9::chr19:47098299..47098310,+p@chr19:47098299..47098310
+
Mm9::chr19:47098414..47098424,+p@chr19:47098414..47098424
+
Mm9::chr1:122498955..122498968,+p1@En1
Mm9::chr1:122498982..122498991,+p3@En1
Mm9::chr1:122499088..122499099,+p2@En1
Mm9::chr1:140739042..140739054,-p2@Lhx9
Mm9::chr1:19093112..19093124,+p1@Tfap2d
Mm9::chr1:78193687..78193692,-p1@Pax3
Mm9::chr2:181333948..181333966,-p2@Samd10
Mm9::chr2:181333971..181333985,-p3@Samd10
Mm9::chr2:28771056..28771092,-p1@Barhl1
Mm9::chr2:28771380..28771413,-p2@Barhl1
Mm9::chr3:17226363..17226378,-p@chr3:17226363..17226378
-
Mm9::chr4:115612528..115612533,-p1@Dmbx1
Mm9::chr4:130348020..130348047,+p8@Sdc3
Mm9::chr4:53792566..53792578,+p1@Tal2
Mm9::chr5:120881766..120881780,-p@chr5:120881766..120881780
-
Mm9::chr5:120881900..120881914,+p1@Lhx5
Mm9::chr5:120881918..120881921,+p5@Lhx5
Mm9::chr5:120881939..120881946,+p2@Lhx5
Mm9::chr5:137994829..137994836,+p2@Actl6b
Mm9::chr6:138375256..138375268,-p8@Lmo3
Mm9::chr6:138375597..138375621,-p11@Lmo3
Mm9::chr7:116314043..116314071,-p1@Lmo1
Mm9::chr7:17400821..17400830,-p4@Fkrp
Mm9::chr7:56892217..56892221,-p1@Dbx1
Mm9::chr7:58877078..58877091,+p6@Slc17a6
Mm9::chr9:102619607..102619633,+p5@Amotl2
Mm9::chr9:41254760..41254771,+p@chr9:41254760..41254771
+
Mm9::chr9:99776566..99776612,-p1@Sox14
Mm9::chr9:99776617..99776631,-p2@Sox14


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data




Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>



TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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