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MCL coexpression mm9:166

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:25255920..25255961,-p1@2010003K15Rik
Mm9::chr10:88969376..88969395,-p1@Nr1h4
Mm9::chr11:49058960..49059008,+p3@Mgat1
Mm9::chr11:51569880..51569995,-p1@Sec24a
Mm9::chr11:51577184..51577251,+p1@Sar1b
Mm9::chr11:77707345..77707356,-p2@Pipox
Mm9::chr11:78798336..78798425,-p1@Lgals9
Mm9::chr13:115608440..115608511,+p1@Mocs2
Mm9::chr13:41331391..41331435,+p@chr13:41331391..41331435
+
Mm9::chr13:41923683..41923694,-p4@9530008L14Rik
Mm9::chr13:41923706..41923771,-p1@9530008L14Rik
Mm9::chr13:41923787..41923813,-p3@9530008L14Rik
Mm9::chr14:123312330..123312412,-p1@A2ld1
Mm9::chr14:56377180..56377273,-p1@Cideb
Mm9::chr15:31498572..31498603,+p2@Cmbl
Mm9::chr15:31498606..31498680,+p1@Cmbl
Mm9::chr15:3220971..3221006,+p1@Sepp1
Mm9::chr15:75046595..75046610,-p@chr15:75046595..75046610
-
Mm9::chr15:82624697..82624714,-p3@Cyp2d26
Mm9::chr15:82624719..82624730,-p4@Cyp2d26
Mm9::chr15:98929918..98929955,+p1@Dnajc22
Mm9::chr16:21787869..21787886,-p1@Ehhadh
Mm9::chr16:22857509..22857535,-p4@Tbccd1
Mm9::chr16:38294929..38294940,-p2@Nr1i2
Mm9::chr17:33084295..33084313,-p2@Cyp4f13
Mm9::chr17:33084317..33084332,-p1@Cyp4f13
Mm9::chr18:11048648..11048660,-p@chr18:11048648..11048660
-
Mm9::chr18:11048665..11048683,-p@chr18:11048665..11048683
-
Mm9::chr18:35786860..35786876,-p3@Slc23a1
Mm9::chr19:33034620..33034661,+p@chr19:33034620..33034661
+
Mm9::chr19:43856787..43856803,+p1@Abcc2
Mm9::chr19:43856810..43856824,+p3@Abcc2
Mm9::chr19:43856829..43856840,+p4@Abcc2
Mm9::chr1:13658854..13658875,+p2@Xkr9
Mm9::chr1:13658880..13658893,+p3@Xkr9
Mm9::chr1:159456230..159456250,+p5@Sec16b
Mm9::chr1:173144100..173144138,+p2@Nr1i3
Mm9::chr1:89470400..89470446,-p2@Ngef
Mm9::chr2:110145776..110145800,-p5@Bbox1
Mm9::chr2:126969049..126969066,-p2@Itpripl1
Mm9::chr2:146839521..146839535,-p@chr2:146839521..146839535
-
Mm9::chr2:24935728..24935759,-p@chr2:24935728..24935759
-
Mm9::chr2:24935836..24935863,+p2@Entpd8
Mm9::chr3:10335676..10335687,-p2@Slc10a5
Mm9::chr3:10335689..10335707,-p1@Slc10a5
Mm9::chr3:28596868..28596902,+p1@Slc2a2
Mm9::chr4:106979733..106979766,-p1@Dio1
Mm9::chr4:117459895..117459906,+p@chr4:117459895..117459906
+
Mm9::chr4:118199591..118199629,+p4@2610528J11Rik
Mm9::chr4:118199638..118199669,+p3@2610528J11Rik
Mm9::chr4:35104653..35104749,-p1@Mob3b
Mm9::chr4:49493906..49493916,-p1@uc008svs.1
Mm9::chr4:49562357..49562386,-p1@Aldob
Mm9::chr4:49562395..49562410,-p2@Aldob
Mm9::chr6:115542589..115542617,-p1@2510049J12Rik
Mm9::chr6:137703050..137703120,+p1@Dera
Mm9::chr7:106331191..106331238,-p1@Dgat2
Mm9::chr7:127317416..127317428,+p2@Anks4b
Mm9::chr7:150659655..150659713,+p1@Slc22a18
Mm9::chr7:52830552..52830560,-p1@ENSMUST00000135933
Mm9::chr8:107450115..107450127,+p4@Ces2e
Mm9::chr8:113551570..113551621,-p3@Ddx19b
Mm9::chr8:120226089..120226100,+p@chr8:120226089..120226100
+
Mm9::chr8:73288050..73288083,-p@chr8:73288050..73288083
-
Mm9::chr9:103966046..103966066,+p1@Acad11
Mm9::chr9:44206450..44206477,+p3@Slc37a4


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0004144diacylglycerol O-acyltransferase activity0.00174125250254486
GO:0006639acylglycerol metabolic process0.00174125250254486
GO:0046486glycerolipid metabolic process0.00174125250254486
GO:0006638neutral lipid metabolic process0.00174125250254486
GO:0006662glycerol ether metabolic process0.00174125250254486
GO:00038462-acylglycerol O-acyltransferase activity0.00179856005864711
GO:0032787monocarboxylic acid metabolic process0.00374434532675187
GO:0046460neutral lipid biosynthetic process0.00374434532675187
GO:0016832aldehyde-lyase activity0.00374434532675187
GO:0046463acylglycerol biosynthetic process0.00374434532675187
GO:0046504glycerol ether biosynthetic process0.00374434532675187
GO:0045017glycerolipid biosynthetic process0.00374434532675187
GO:0016491oxidoreductase activity0.00374434532675187
GO:0003707steroid hormone receptor activity0.00374434532675187
GO:0004879ligand-dependent nuclear receptor activity0.00374434532675187
GO:0015293symporter activity0.00416216468050081
GO:0005624membrane fraction0.00667373808695119
GO:0016411acylglycerol O-acyltransferase activity0.00770460423265143
GO:0022804active transmembrane transporter activity0.00953023842497523
GO:0015291secondary active transmembrane transporter activity0.00953023842497523
GO:0000267cell fraction0.00953023842497523
GO:0044255cellular lipid metabolic process0.0101111549460318
GO:0006641triacylglycerol metabolic process0.0124823647578902
GO:0006071glycerol metabolic process0.0124823647578902
GO:0019751polyol metabolic process0.0124823647578902
GO:0042579microbody0.0124823647578902
GO:0005777peroxisome0.0124823647578902
GO:0006629lipid metabolic process0.0165168601474546
GO:0006091generation of precursor metabolites and energy0.0206997934162585
GO:0008374O-acyltransferase activity0.0212606019526577
GO:0008430selenium binding0.0212606019526577
GO:0009791post-embryonic development0.0212606019526577
GO:0019752carboxylic acid metabolic process0.0212606019526577
GO:0006082organic acid metabolic process0.0212606019526577
GO:0008115sarcosine oxidase activity0.0212606019526577
GO:0004139deoxyribose-phosphate aldolase activity0.0212606019526577
GO:0050031L-pipecolate oxidase activity0.0212606019526577
GO:0032682negative regulation of chemokine production0.0212606019526577
GO:0001887selenium metabolic process0.0212606019526577
GO:0008336gamma-butyrobetaine dioxygenase activity0.0212606019526577
GO:0046653tetrahydrofolate metabolic process0.0212606019526577
GO:0032642regulation of chemokine production0.0212606019526577
GO:0008520L-ascorbate:sodium symporter activity0.0212606019526577
GO:0005783endoplasmic reticulum0.0228979929338124
GO:0016830carbon-carbon lyase activity0.0269041737485365
GO:0015370solute:sodium symporter activity0.0291277756736434
GO:0016829lyase activity0.033874784032441
GO:0006118electron transport0.033874784032441
GO:0002318myeloid progenitor cell differentiation0.033874784032441
GO:0045730respiratory burst0.033874784032441
GO:0045329carnitine biosynthetic process0.033874784032441
GO:0006089lactate metabolic process0.033874784032441
GO:0035166post-embryonic hemopoiesis0.033874784032441
GO:0006732coenzyme metabolic process0.033874784032441
GO:0015294solute:cation symporter activity0.0407867671654657
GO:0016647oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor0.0434478032946142
GO:0050327testosterone 17-beta-dehydrogenase activity0.0434478032946142
GO:0012507ER to Golgi transport vesicle membrane0.0434478032946142
GO:0030134ER to Golgi transport vesicle0.0434478032946142
GO:0015760glucose-6-phosphate transport0.0434478032946142
GO:0030127COPII vesicle coat0.0434478032946142
GO:0004165dodecenoyl-CoA delta-isomerase activity0.0434478032946142
GO:0004800thyroxine 5'-deiodinase activity0.0434478032946142
GO:0051186cofactor metabolic process0.0446139464425043
GO:0044249cellular biosynthetic process0.0446139464425043
GO:0006790sulfur metabolic process0.0449109058718855
GO:0008643carbohydrate transport0.0471450283721544
GO:0009058biosynthetic process0.0472297746847424
GO:0019432triacylglycerol biosynthetic process0.0479739257451353
GO:0009133nucleoside diphosphate biosynthetic process0.0479739257451353
GO:0001780neutrophil homeostasis0.0479739257451353
GO:0006651diacylglycerol biosynthetic process0.0479739257451353
GO:0009437carnitine metabolic process0.0479739257451353
GO:0004300enoyl-CoA hydratase activity0.0479739257451353
GO:00038573-hydroxyacyl-CoA dehydrogenase activity0.0479739257451353
GO:0009264deoxyribonucleotide catabolic process0.0479739257451353



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
intestinal epithelial cell2.15e-079
epithelial cell of alimentary canal2.15e-079
epithelial cell5.62e-0725

Uber Anatomy
Ontology termp-valuen
intestine2.36e-2031
gastrointestinal system2.77e-1847
digestive tract diverticulum5.14e-1723
sac5.14e-1723
liver2.07e-1622
epithelial sac2.07e-1622
digestive gland2.07e-1622
epithelium of foregut-midgut junction2.07e-1622
anatomical boundary2.07e-1622
hepatobiliary system2.07e-1622
foregut-midgut junction2.07e-1622
hepatic diverticulum2.07e-1622
liver primordium2.07e-1622
septum transversum2.07e-1622
liver bud2.07e-1622
endoderm-derived structure5.82e-14118
endoderm5.82e-14118
presumptive endoderm5.82e-14118
digestive system1.92e-13116
digestive tract1.92e-13116
primitive gut1.92e-13116
exocrine gland2.21e-1325
exocrine system2.21e-1325
subdivision of digestive tract2.27e-12114
mucosa5.46e-1215
abdomen element5.88e-1149
abdominal segment element5.88e-1149
abdominal segment of trunk5.88e-1149
abdomen5.88e-1149
intestinal mucosa1.30e-1013
anatomical wall1.30e-1013
wall of intestine1.30e-1013
gastrointestinal system mucosa1.30e-1013
organ component layer7.41e-0824
gut epithelium9.54e-0855
epithelium of mucosa2.15e-079
gastrointestinal system epithelium2.15e-079
intestinal epithelium2.15e-079
trunk mesenchyme6.11e-0745


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.000458662
MA0004.10.483795
MA0006.10.0219464
MA0007.10.442865
MA0009.10.474142
MA0014.10.00245484
MA0017.19.17255
MA0019.10.248387
MA0024.10.132989
MA0025.10.308048
MA0027.11.60586
MA0028.10.386398
MA0029.10.386539
MA0030.12.51856
MA0031.10.710815
MA0038.11.81877
MA0040.10.491598
MA0041.10.293292
MA0042.10.648059
MA0043.10.21448
MA0046.11.59725
MA0048.10.0834119
MA0050.10.596343
MA0051.10.347052
MA0052.10.502954
MA0055.10.00217501
MA0056.10
MA0057.10.0619361
MA0058.10.620235
MA0059.10.450808
MA0060.11.10059
MA0061.10.326599
MA0063.10
MA0066.10.133917
MA0067.10.392359
MA0068.10.244308
MA0069.10.168415
MA0070.10.162867
MA0071.10.593819
MA0072.10.477946
MA0073.10.0149343
MA0074.10.260675
MA0076.10.73109
MA0077.10.146146
MA0078.10.179451
MA0081.10.0824205
MA0083.10.213975
MA0084.10.670595
MA0087.10.187238
MA0088.10.0808262
MA0089.10
MA0090.11.56891
MA0091.10.306768
MA0092.10.393365
MA0093.10.604405
MA0095.10
MA0098.10
MA0100.10.461027
MA0101.10.29618
MA0103.10.940131
MA0105.10.269283
MA0106.10.416802
MA0107.10.458425
MA0108.20.97311
MA0109.10
MA0111.10.666252
MA0113.10.368016
MA0114.113.8665
MA0115.11.16182
MA0116.10.121772
MA0117.10.196027
MA0119.12.9327
MA0122.10.208382
MA0124.10.351161
MA0125.10.296313
MA0130.10
MA0131.10.522025
MA0132.10
MA0133.10
MA0135.10.238187
MA0136.11.23052
MA0139.10.344063
MA0140.11.09173
MA0141.10.217655
MA0142.10.10126
MA0143.10.396005
MA0144.10.329188
MA0145.11.11392
MA0146.10.00206335
MA0147.10.143959
MA0148.11.50616
MA0149.10.00428198
MA0062.21.3248
MA0035.20.471578
MA0039.20.0236984
MA0138.20.235161
MA0002.20.356875
MA0137.20.772738
MA0104.20.0619029
MA0047.21.34926
MA0112.20.937215
MA0065.25.89372
MA0150.11.31804
MA0151.10
MA0152.10.331417
MA0153.13.65414
MA0154.10.489275
MA0155.10.152658
MA0156.11.60958
MA0157.11.02801
MA0158.10
MA0159.10.411392
MA0160.10.815509
MA0161.10
MA0162.10.00125859
MA0163.10.00578082
MA0164.10.536144
MA0080.21.85021
MA0018.20.0317353
MA0099.20.494744
MA0079.20.00360608
MA0102.20.717952
MA0258.10.405729
MA0259.10.125519
MA0442.10
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