CL:0000066
From FANTOM5_SSTAR
Name: | epithelial cell | |
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Namespace: | cell | |
Definition: | "A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina." [FB:ma, GOC:tfm, MESH:A.11.436] | |
Xrefs: |
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Synonyms: | "Epitheliocyte" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | CL:0000063(),CL:0000548(animal cell) |
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Children
is a: | CL:0000068 (duct epithelial cell),CL:0000075 (columnar/cuboidal epithelial cell),CL:0000076 (squamous epithelial cell),CL:0000079 (stratified epithelial cell),CL:0000082 (epithelial cell of lung),CL:0000083 (epithelial cell of pancreas),CL:0000098 (sensory epithelial cell),CL:0000150 (glandular epithelial cell),CL:0000182 (hepatocyte),CL:0000244 (transitional epithelial cell),CL:0000666 (fenestrated cell),CL:0002076 (endo-epithelial cell),CL:0002077 (ecto-epithelial cell),CL:0002078 (meso-epithelial cell),CL:0002222 (vertebrate lens cell),CL:0002327 (mammary gland epithelial cell),CL:0002518 (kidney epithelial cell),CL:0002535 (epithelial cell of cervix),CL:0002536 (amniotic epithelial cell),CL:0002565 (iris pigment epithelial cell),CL:0002577 (placental epithelial cell),CL:0002586 (retinal pigment epithelial cell),CL:0005012 (multi-ciliated epithelial cell),CL:1000415 (epithelial cell of gall bladder) |
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derives from: | FF:0101120 (epithelial cell line sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10411-106B6 (renal cell carcinoma cell line:OS-RC-2)
- 10412-106B7 (malignant trichilemmal cyst cell line:DJM-1)
- 10415-106C1 (gall bladder carcinoma cell line:TGBC2TKB)
- 10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB)
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10419-106C5 (breast carcinoma cell line:MDA-MB-453)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10426-106D3 (epidermoid carcinoma cell line:A431)
- 10428-106D5 (anaplastic carcinoma cell line:8305C)
... further results Mouse (Mus musculus)
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10411-106B6 (renal cell carcinoma cell line:OS-RC-2)
- 10412-106B7 (malignant trichilemmal cyst cell line:DJM-1)
- 10415-106C1 (gall bladder carcinoma cell line:TGBC2TKB)
- 10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB)
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10419-106C5 (breast carcinoma cell line:MDA-MB-453)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10426-106D3 (epidermoid carcinoma cell line:A431)
- 10428-106D5 (anaplastic carcinoma cell line:8305C)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000066 (epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data