UBERON:0010707
From FANTOM5_SSTAR
| Name: | appendage girdle complex | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "An organism subdivision that includes both an appendage and its accociated girdle region. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc)." [UBERON:cjm, UBERONREF:0000003] | ||
| Xrefs: |
| ||
| Synonyms: |
"appendage complex" EXACT [UBERON:cjm] "appendage-girdle complex" EXACT [UBERON:cjm] "girdle plus limb or fin" EXACT [UBERON:cjm] "limb" RELATED INCONSISTENT [FMA:7182] | ||
| Comments: | It is still called a complex when one of the two parts is missing (?) There are fossil fishes with only an outgrowth (no record of a girdle), including thelodonts (which have a suprabranchial fin) as well as some anaspids which have a distinctive 'paired fin' (with differing published assertions on whether it's homologous to a pec fin or pelvic fin or both or neither). There are many fishes and other vertebrates with only a girdle and no outgrowth.[VSAO] AO notes: note that the FMA uses the term 'limb' to refer to the entire appendage complex (free limb plus girdle region) | ||
| Created by: | haendel | ||
| Creation date: | 2012-04-23T10:46:51Z |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000475(organism subdivision),UBERON:0015212(lateral structure) |
|---|
Children
| is a: | UBERON:0010708 (pectoral complex),UBERON:0010709 (pelvic complex) |
|---|---|
| part of: | UBERON:0004708 (paired limb/fin),UBERON:0010740 (bone of appendage girdle complex) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10232-103I7 (chicken wing buds, day03 (HH20))
- 10264-104D3
- 10267-104D6
- 10273-104E3
- 10281-104F2
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10285-104F6
- 10286-104F7 (Skin - palm, donor1)
- 10292-104G4 (achilles tendon, donor2)
- 10295-104G7 (cruciate ligament, donor2)
... further results Mouse (Mus musculus)
- 10232-103I7 (chicken wing buds, day03 (HH20))
- 10264-104D3
- 10267-104D6
- 10273-104E3
- 10281-104F2
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10285-104F6
- 10286-104F7 (Skin - palm, donor1)
- 10292-104G4 (achilles tendon, donor2)
- 10295-104G7 (cruciate ligament, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010707 (appendage girdle complex), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_8602e6180f3d65eb816ec8d96aececbb | p@chr10:97176812..97176813, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_8602e6180f3d65eb816ec8d96aececbb | p@chr10:97176812..97176813, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_8602e6180f3d65eb816ec8d96aececbb | p@chr2:76859417..76859418, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_8602e6180f3d65eb816ec8d96aececbb | p@chr10:79759687..79759690, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_8602e6180f3d65eb816ec8d96aececbb | p@chr11:3691037..3691040, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_8602e6180f3d65eb816ec8d96aececbb | p@chr2:76859417..76859418, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_8602e6180f3d65eb816ec8d96aececbb | p@chr4:186423235..186423240, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_8602e6180f3d65eb816ec8d96aececbb | p@chr11:3691037..3691040, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_8602e6180f3d65eb816ec8d96aececbb | p@chr22:25535147..25535150, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_8602e6180f3d65eb816ec8d96aececbb | p@chr4:186423235..186423240, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_8602e6180f3d65eb816ec8d96aececbb | p@chr10:79759687..79759690, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_8602e6180f3d65eb816ec8d96aececbb | p@chr2:179396370..179396375, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_8602e6180f3d65eb816ec8d96aececbb | p@chr22:25535147..25535150, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_8602e6180f3d65eb816ec8d96aececbb | p@chr7:128483294..128483304, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_8602e6180f3d65eb816ec8d96aececbb | p@chr7:128483294..128483304, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_8602e6180f3d65eb816ec8d96aececbb | p@chr2:179396370..179396375, - |
| 5.42e-195 | FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_8602e6180f3d65eb816ec8d96aececbb | p@chr4:85166508..85166512, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_8602e6180f3d65eb816ec8d96aececbb | p@chr4:85166508..85166512, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p104@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr2:179514306..179514308, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p54@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr1:119487319..119487331, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p7@FLJ36848 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr6:33716557..33716600, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr2:152553958..152553964, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr2:152499727..152499734, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr5:172318159..172318160, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p108@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr2:152525581..152525588, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p1@ENST00000430244, p1@uc003tvu.2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p104@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr15:51060095..51060101, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr2:152520248..152520253, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr6:33716557..33716600, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p7@FLJ36848 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p108@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr13:51335579..51335582, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr2:179514306..179514308, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr2:152553958..152553964, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr2:152499727..152499734, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr5:137206180..137206187, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr2:152534468..152534476, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr2:152520248..152520253, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr1:145478051..145478060, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr8:144542829..144542857, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr3:188070178..188070183, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr13:114067922..114067931, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr5:137206180..137206187, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr1:119487319..119487331, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr5:117747577..117747580, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p93@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr3:188070178..188070183, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr2:152534468..152534476, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr13:114067922..114067931, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr5:175125123..175125125, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p77@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr22:36000901..36000903, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr5:117747577..117747580, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr8:144542829..144542857, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p46@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr2:179399371..179399376, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p77@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr5:172318159..172318160, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p46@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p93@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr15:51060095..51060101, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr2:152525581..152525588, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr2:179399371..179399376, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p54@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr22:36000901..36000903, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr5:175125123..175125125, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p1@ENST00000430244, p1@uc003tvu.2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr1:145478051..145478060, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_13b8b112ab09d662f4d2e7efc9d82d01 | p@chr13:51335579..51335582, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:179656442..179656451,-#_48dad317ebcdb7464f57400779a939f1 | p@chr2:179656442..179656451, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:69653866..69653876,+#_48dad317ebcdb7464f57400779a939f1 | p@chr12:69653866..69653876, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:35732964..35732965,+#_48dad317ebcdb7464f57400779a939f1 | p@chr3:35732964..35732965, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:29398214..29398229,+#_48dad317ebcdb7464f57400779a939f1 | p27@CLIP4 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:69168368..69168389,-#_48dad317ebcdb7464f57400779a939f1 | p@chr3:69168368..69168389, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:102079632..102079647,-#_48dad317ebcdb7464f57400779a939f1 | p@chr12:102079632..102079647, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:35732964..35732965,+#_48dad317ebcdb7464f57400779a939f1 | p@chr3:35732964..35732965, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr18:8608021..8608050,+#_48dad317ebcdb7464f57400779a939f1 | p@chr18:8608021..8608050, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr6:125535391..125535409,+#_48dad317ebcdb7464f57400779a939f1 | p@chr6:125535391..125535409, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:29398214..29398229,+#_48dad317ebcdb7464f57400779a939f1 | p27@CLIP4 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:46924232..46924241,+#_48dad317ebcdb7464f57400779a939f1 | p@chr3:46924232..46924241, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_48dad317ebcdb7464f57400779a939f1 | p@chr3:46924232..46924241, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:152566311..152566321,-#_48dad317ebcdb7464f57400779a939f1 | p@chr2:152566311..152566321, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr10:97037060..97037066,-#_48dad317ebcdb7464f57400779a939f1 | p@chr10:97037060..97037066, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:168102459..168102468,+#_48dad317ebcdb7464f57400779a939f1 | p73@XIRP2 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr6:125535391..125535409,+#_48dad317ebcdb7464f57400779a939f1 | p@chr6:125535391..125535409, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr10:29918007..29918031,-#_48dad317ebcdb7464f57400779a939f1 | p@chr10:29918007..29918031, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr22:26299595..26299605,+#_48dad317ebcdb7464f57400779a939f1 | p@chr22:26299595..26299605, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:69653866..69653876,+#_48dad317ebcdb7464f57400779a939f1 | p@chr12:69653866..69653876, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr5:95180155..95180172,+#_48dad317ebcdb7464f57400779a939f1 | p@chr5:95180155..95180172, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:168102459..168102468,+#_48dad317ebcdb7464f57400779a939f1 | p73@XIRP2 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:152566311..152566321,-#_48dad317ebcdb7464f57400779a939f1 | p@chr2:152566311..152566321, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr10:97037060..97037066,-#_48dad317ebcdb7464f57400779a939f1 | p@chr10:97037060..97037066, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr5:95180155..95180172,+#_48dad317ebcdb7464f57400779a939f1 | p@chr5:95180155..95180172, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr21:47769234..47769239,+#_48dad317ebcdb7464f57400779a939f1 | p@chr21:47769234..47769239, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr22:26299595..26299605,+#_48dad317ebcdb7464f57400779a939f1 | p@chr22:26299595..26299605, + |
