FFCP PHASE1:Hg19::chr11:66104237..66104250,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9610|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=18749|TSSclassifier=S|UniProt=E9PNR2|association_with_transcript=60bp_to_ENST00000530056,uc010rpa.1_5end|description=CAGE_peak_4_at_RIN1_5end|id=chr11:66104237..66104250,-|ontology_enrichment_celltype=CL:0000860!1.62e-10!45;CL:0002057!7.99e-09!42;CL:0000766!2.07e-07!76|ontology_enrichment_celltype_v019=CL:0000047;2.62e-24;2!CL:0000575;3.69e-07;2!CL:0002593;3.69e-07;2|ontology_enrichment_celltype_v019_2=CL:0000575,4.69e-07,2;CL:0002593,4.98e-07,2|ontology_enrichment_development_v019=UBERON:0006215;1.48e-16;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.55e-18!82;UBERON:0000073!5.00e-17!94;UBERON:0001016!5.00e-17!94;UBERON:0005743!1.26e-16!86;UBERON:0000955!8.94e-15!69;UBERON:0006238!8.94e-15!69;UBERON:0001049!5.27e-14!57;UBERON:0005068!5.27e-14!57;UBERON:0006241!5.27e-14!57;UBERON:0007135!5.27e-14!57;UBERON:0002780!5.32e-14!41;UBERON:0001890!5.32e-14!41;UBERON:0006240!5.32e-14!41;UBERON:0003080!1.86e-13!42;UBERON:0004121!5.47e-13!169;UBERON:0000924!5.75e-13!173;UBERON:0006601!5.75e-13!173;UBERON:0002616!2.86e-12!59;UBERON:0001893!3.64e-11!34;UBERON:0001869!5.59e-11!32;UBERON:0000033!1.02e-10!123;UBERON:0002791!2.11e-10!33;UBERON:0000956!1.19e-09!25;UBERON:0000203!1.19e-09!25;UBERON:0000153!1.52e-09!129;UBERON:0007811!1.52e-09!129;UBERON:0002619!4.12e-09!22;UBERON:0001950!4.37e-09!20;UBERON:0002020!8.72e-09!34;UBERON:0003528!8.72e-09!34;UBERON:0003075!1.04e-08!86;UBERON:0007284!1.04e-08!86;UBERON:0002346!1.30e-08!90;UBERON:0003056!2.35e-08!61|ontology_enrichment_uberon_v019=UBERON:0002902;4.76e-13;1!UBERON:0002022;4.76e-13;1!UBERON:0009899;4.76e-13;1!UBERON:0001950;3.06e-09;20!UBERON:0001016;4.78e-09;83!UBERON:0000955;6.78e-09;68!UBERON:0002037;9.62e-09;6!UBERON:0002619;1.87e-08;22!UBERON:0001871;9.71e-08;6!UBERON:0000956;1.69e-07;25!UBERON:0000203;1.69e-07;25!UBERON:0001876;2.21e-07;2!UBERON:0002456;3.69e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0002022,4.77e-13,1;UBERON:0002902,6.06e-13,1;UBERON:0009899,6.06e-13,1;UBERON:0001017,6.57e-13,81;UBERON:0001016,1.60e-11,89;UBERON:0000955,5.76e-10,68;UBERON:0006238,5.76e-10,68;UBERON:0001950,2.90e-09,20;UBERON:0002037,7.05e-09,6;UBERON:0006215,7.05e-09,6;UBERON:0002619,1.78e-08,22;UBERON:0004121,4.53e-08,171;UBERON:0000924,4.53e-08,171;UBERON:0006601,4.53e-08,171;UBERON:0001871,8.35e-08,6;UBERON:0002346,8.95e-08,86;UBERON:0000073,1.54e-07,53;UBERON:0002616,1.54e-07,53;UBERON:0000956,1.62e-07,25;UBERON:0000203,1.62e-07,25;UBERON:0001876,2.15e-07,2;UBERON:0001049,4.04e-07,56;UBERON:0005068,4.04e-07,56;UBERON:0006241,4.04e-07,56;UBERON:0007135,4.04e-07,56;UBERON:0002456,4.98e-07,2|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0.263766978228454,0.123766352960047,0,0,0,0,0,0.123121058076788,0,0,0.286235987131057,0.136874425072884,0,0,0,0.0787107813136792,0.393364276848904,0.767658796194425,0.928896739896456,0,0,0.369754010166788,0,0,0,0,0.200544447470142,0.434021741431704,0,0,0,0.290796477559129,0.377875943688809,0.242584061187816,0.464858073811369,0,0.309706370895104,0.28769239232215,0,0,1.72372840368309,0,0,0.188242339542605,0,0.224723484445085,0,0.320929027076094,0,0.659702600373432,0,0.426224750532694,0.580418477257168,0,0,0,0.521482918420201,0.434377689410233,0,0.368277635987565,0.316462387440884,0,0.425208599930087,0,0,0.600707571366025,0,0.285012743741249,0.19891667719909,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0.364295288292542,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468642863667593,0,0,0,0.117434498643765,0,0,0,0,0.103325781175765,0,0,0,0,0.168336113954066,0,0.277064115484183,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0.0920498986422993,0,0.355009592516614,0,0,0,0.545492241181669,0,0,0,0.116193942869518,0,0,0,0,0,0,0.464367928031979,0,0,0.168584690078102,0,0,0,0,0,0.588664395376038,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0.219500570817251,0,0.201057944823262,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179117045405697,0,0,0,0,0.414656231081544,2.16179930125442,0.37872730027914,0,0,0,0,0,0,0,0.112131084345361,0,0,0.129271715757778,0,0,0,0,0.514414748524284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01637849688985,1.30139853857622,0.773288812777695,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.082509499920588,0.574265537996172,0,0,0.193341436584244,0.154048617114644,0.15350367472613,0,0.214840489736547,0,0,0,0.165284915360978,0,0.255225424989168,0,0,0,1.3940745403212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05650146756755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9610 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18749 | |||
|TSSclassifier=S | |||
|UniProt=E9PNR2 | |||
|association_with_transcript=60bp_to_ENST00000530056,uc010rpa.1_5end | |||
|description=CAGE_peak_4_at_RIN1_5end | |||
|id=chr11:66104237..66104250,- | |||
|ontology_enrichment_celltype=CL:0000860!1.62e-10!45;CL:0002057!7.99e-09!42;CL:0000766!2.07e-07!76 | |||
|ontology_enrichment_celltype_v019=CL:0000047;2.62e-24;2!CL:0000575;3.69e-07;2!CL:0002593;3.69e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000575,4.69e-07,2;CL:0002593,4.98e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0006215;1.48e-16;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.55e-18!82;UBERON:0000073!5.00e-17!94;UBERON:0001016!5.00e-17!94;UBERON:0005743!1.26e-16!86;UBERON:0000955!8.94e-15!69;UBERON:0006238!8.94e-15!69;UBERON:0001049!5.27e-14!57;UBERON:0005068!5.27e-14!57;UBERON:0006241!5.27e-14!57;UBERON:0007135!5.27e-14!57;UBERON:0002780!5.32e-14!41;UBERON:0001890!5.32e-14!41;UBERON:0006240!5.32e-14!41;UBERON:0003080!1.86e-13!42;UBERON:0004121!5.47e-13!169;UBERON:0000924!5.75e-13!173;UBERON:0006601!5.75e-13!173;UBERON:0002616!2.86e-12!59;UBERON:0001893!3.64e-11!34;UBERON:0001869!5.59e-11!32;UBERON:0000033!1.02e-10!123;UBERON:0002791!2.11e-10!33;UBERON:0000956!1.19e-09!25;UBERON:0000203!1.19e-09!25;UBERON:0000153!1.52e-09!129;UBERON:0007811!1.52e-09!129;UBERON:0002619!4.12e-09!22;UBERON:0001950!4.37e-09!20;UBERON:0002020!8.72e-09!34;UBERON:0003528!8.72e-09!34;UBERON:0003075!1.04e-08!86;UBERON:0007284!1.04e-08!86;UBERON:0002346!1.30e-08!90;UBERON:0003056!2.35e-08!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002902;4.76e-13;1!UBERON:0002022;4.76e-13;1!UBERON:0009899;4.76e-13;1!UBERON:0001950;3.06e-09;20!UBERON:0001016;4.78e-09;83!UBERON:0000955;6.78e-09;68!UBERON:0002037;9.62e-09;6!UBERON:0002619;1.87e-08;22!UBERON:0001871;9.71e-08;6!UBERON:0000956;1.69e-07;25!UBERON:0000203;1.69e-07;25!UBERON:0001876;2.21e-07;2!UBERON:0002456;3.69e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002022,4.77e-13,1;UBERON:0002902,6.06e-13,1;UBERON:0009899,6.06e-13,1;UBERON:0001017,6.57e-13,81;UBERON:0001016,1.60e-11,89;UBERON:0000955,5.76e-10,68;UBERON:0006238,5.76e-10,68;UBERON:0001950,2.90e-09,20;UBERON:0002037,7.05e-09,6;UBERON:0006215,7.05e-09,6;UBERON:0002619,1.78e-08,22;UBERON:0004121,4.53e-08,171;UBERON:0000924,4.53e-08,171;UBERON:0006601,4.53e-08,171;UBERON:0001871,8.35e-08,6;UBERON:0002346,8.95e-08,86;UBERON:0000073,1.54e-07,53;UBERON:0002616,1.54e-07,53;UBERON:0000956,1.62e-07,25;UBERON:0000203,1.62e-07,25;UBERON:0001876,2.15e-07,2;UBERON:0001049,4.04e-07,56;UBERON:0005068,4.04e-07,56;UBERON:0006241,4.04e-07,56;UBERON:0007135,4.04e-07,56;UBERON:0002456,4.98e-07,2 | |||
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| |||
|short_description=p4@RIN1 | |||
}} |
Revision as of 19:08, 10 September 2013
Short description: | p4@RIN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_RIN1_5end |
Coexpression cluster: | NA |
Association with transcript: | 60bp_to_ENST00000530056, uc010rpa.1_5end |
EntrezGene: | RIN1 |
HGNC: | 18749 |
UniProt: | E9PNR2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
corneal epithelial cell | 4.69e-07 | 2 |
smooth muscle cell of the internal thoracic artery | 4.98e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
insula | 4.77e-13 | 1 |
occipital pole | 6.06e-13 | 1 |
pole of cerebral hemisphere | 6.06e-13 | 1 |
central nervous system | 6.57e-13 | 81 |
nervous system | 1.60e-11 | 89 |
brain | 5.76e-10 | 68 |
future brain | 5.76e-10 | 68 |
neocortex | 2.90e-09 | 20 |
cerebellum | 7.05e-09 | 6 |
rhombic lip | 7.05e-09 | 6 |
regional part of cerebral cortex | 1.78e-08 | 22 |
ectoderm-derived structure | 4.53e-08 | 171 |
ectoderm | 4.53e-08 | 171 |
presumptive ectoderm | 4.53e-08 | 171 |
temporal lobe | 8.35e-08 | 6 |
neurectoderm | 8.95e-08 | 86 |
regional part of nervous system | 1.54e-07 | 53 |
regional part of brain | 1.54e-07 | 53 |
cerebral cortex | 1.62e-07 | 25 |
pallium | 1.62e-07 | 25 |
amygdala | 2.15e-07 | 2 |
neural tube | 4.04e-07 | 56 |
neural rod | 4.04e-07 | 56 |
future spinal cord | 4.04e-07 | 56 |
neural keel | 4.04e-07 | 56 |
internal thoracic artery | 4.98e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.