FFCP PHASE1:Hg19::chr15:67358128..67358133,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4088|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6769|TSSclassifier=S|UniProt=P84022|association_with_transcript=-49bp_to_ENST00000327367,ENST00000535241_5end|description=CAGE_peak_12_at_SMAD3_5end|id=chr15:67358128..67358133,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:1000449;2.28e-08;15!CL:1000497;4.32e-07;17!CL:0002518;4.32e-07;17!CL:0002681;6.41e-07;12!CL:0002584;6.41e-07;12!CL:1000507;8.76e-07;10!CL:1000494;8.76e-07;10|ontology_enrichment_celltype_v019_2=CL:1000449,1.60e-08,15;CL:1000497,3.19e-07,17;CL:0002518,3.19e-07,17;CL:0002681,5.01e-07,12;CL:0002584,5.01e-07,12;CL:1000507,5.20e-07,10;CL:1000494,5.20e-07,10|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003064!5.59e-07!37|ontology_enrichment_uberon_v019=UBERON:0006555;2.28e-08;15!UBERON:0004819;2.28e-08;15!UBERON:0001285;2.28e-08;15!UBERON:0007684;2.28e-08;15!UBERON:0001225;6.41e-07;12!UBERON:0008987;6.41e-07;12!UBERON:0004211;8.76e-07;10!UBERON:0009773;8.76e-07;10!UBERON:0001231;8.76e-07;10!UBERON:0004810;8.76e-07;10|ontology_enrichment_uberon_v019_2=UBERON:0006555,3.00e-09,16;UBERON:0004819,3.00e-09,16;UBERON:0004211,1.60e-08,15;UBERON:0009773,1.60e-08,15;UBERON:0001231,1.60e-08,15;UBERON:0001285,1.60e-08,15;UBERON:0007684,1.60e-08,15;UBERON:0004208,1.60e-08,15;UBERON:0001225,5.01e-07,12;UBERON:0008987,5.01e-07,12;UBERON:0004810,5.20e-07,10|phase1_expression=0.363356758541113,0.428201047781966,0.281908808191942,1.0007329835313,0,0.872338524100369,0,0,0.522371256399677,0.245733936501509,2.09340350391728,0.655324116390517,1.05506791291381,0.495065411840187,0.994192127183747,1.34465029290355,1.20538905604795,0.730310090387373,0,0.984968464614303,1.22400414746552,0.626909442956176,1.14494394852423,0.410623275218653,1.38096903554283,0.458480434487708,0.164201178899891,0.393553906568396,0.393364276848904,0.767658796194425,0.77408061658038,0,0,0.369754010166788,0.154934401160603,0.426507697462265,0.293600439334847,1.10799081706375,0.802177789880567,1.30206522429511,0.223915474239924,0.971680998056939,0,0.726991193897824,1.51150377475524,0,0.697287110717054,0.822335776043652,0,0,0.512321413058201,0,0,0.645484683583826,1.35426486594342,1.31769637679823,0,0,0.612167784741805,0,0,0,0.997318288108159,1.27867425159808,0.290209238628584,0.56738522469114,0.622822248995575,0.502497330513487,1.0429658368404,0.217188844705117,0.605399502633369,0,0,0.422510572623884,0.425208599930087,0,0.898629049171961,0.901061357049038,1.44653028027372,0,0.99458338599545,0.182664153764634,0,0,0.889509253863555,0.426730222566507,0.800791974072025,1.14950487990897,0.661044872784862,0,2.84606484554724,0.587237189370939,0.382273228125229,0,0,0.526768169550154,0.196709770113833,0,0.616804496998528,0.334372990781356,0.651844533267181,0,0,0.557052284425868,0.294605907474837,0,0.270803863765016,0.128091319725675,0.130059347559878,0.328875809207352,0.276350017785848,0,0,0.535081656179426,0,0.226618685395132,0,0,0,0,0.651083453856419,0,0,0.383959833463255,0,0.236777252044017,0,0.403213486449465,0.534880391567015,0.144824403882799,0,0.670700859703636,0.383587685530591,2.1686349143074,0.50133791063589,0.869079113764942,0,0.486634870302636,1.03988298880475,0.221729397462564,0.614843499851882,0.851363990735132,0.364295288292542,1.11235332835329,0.649094787309367,0,0,0,0.571994910780128,0.371457501329565,0.39752481473341,0,0.347140501607594,0,0.419499436209906,0.275118041940067,0.417989933073621,0.258416759169329,0.35576626268671,0.66944122552934,0.402829317109147,0,0.976248230192678,0.367663080345869,0,0.714397826272638,0.673588117878509,0.450445921933289,0,0.949265659568129,0.366403487860815,0,0,0.872188104285069,1.98788780678127,0.25326102332916,0.662045904066094,0.860509862246441,0.354668382198357,1.12135520028461,0,0.74000264525148,0.311211035399766,0.269421344139376,0.490385709340376,0.605429710579726,0,0.70296429550139,0.312160076830321,0.570471821544449,0.597794722207204,0.587172493218824,0,0.140450806702248,0,0.122834317311768,0.413303124703062,1.18800285728205,0.494533858557114,1.82032272387605,2.15585442544872,0.168336113954066,0.750711119231785,0.554128230968366,0.438977620880838,0.30648779579902,0.45071417671979,0.567160915800105,1.25572744982203,0.427114777637135,0,0.300091096084402,0.721367704669072,0.772921620136887,0.37223371266318,0.843881661206331,0.974370051611986,0.252433774244115,0.184099797284599,1.13152239773168,1.06502877754984,0.201504196455281,0.169560592310488,0,0.818238361772504,0.573609190778008,0.243947412259191,0,0.116193942869518,0.207322110030741,0,0.36497735907583,3.12899064659632,1.92972281457866,0,0.464367928031979,1.44375896333917,0.118306800039844,0.168584690078102,0.241011029883482,0.330881918197182,0,0,0.539325232640658,0,0.38474715694639,0.738155454624648,0,0.4115740113314,1.47008711385542,0,0.982827216677626,1.18157981336281,0,0.36896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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4088 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6769 | |||
|TSSclassifier=S | |||
|UniProt=P84022 | |||
|association_with_transcript=-49bp_to_ENST00000327367,ENST00000535241_5end | |||
|description=CAGE_peak_12_at_SMAD3_5end | |||
|id=chr15:67358128..67358133,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:1000449;2.28e-08;15!CL:1000497;4.32e-07;17!CL:0002518;4.32e-07;17!CL:0002681;6.41e-07;12!CL:0002584;6.41e-07;12!CL:1000507;8.76e-07;10!CL:1000494;8.76e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:1000449,1.60e-08,15;CL:1000497,3.19e-07,17;CL:0002518,3.19e-07,17;CL:0002681,5.01e-07,12;CL:0002584,5.01e-07,12;CL:1000507,5.20e-07,10;CL:1000494,5.20e-07,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003064!5.59e-07!37 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;2.28e-08;15!UBERON:0004819;2.28e-08;15!UBERON:0001285;2.28e-08;15!UBERON:0007684;2.28e-08;15!UBERON:0001225;6.41e-07;12!UBERON:0008987;6.41e-07;12!UBERON:0004211;8.76e-07;10!UBERON:0009773;8.76e-07;10!UBERON:0001231;8.76e-07;10!UBERON:0004810;8.76e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006555,3.00e-09,16;UBERON:0004819,3.00e-09,16;UBERON:0004211,1.60e-08,15;UBERON:0009773,1.60e-08,15;UBERON:0001231,1.60e-08,15;UBERON:0001285,1.60e-08,15;UBERON:0007684,1.60e-08,15;UBERON:0004208,1.60e-08,15;UBERON:0001225,5.01e-07,12;UBERON:0008987,5.01e-07,12;UBERON:0004810,5.20e-07,10 | |||
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| |||
|short_description=p12@SMAD3 | |||
}} |
Revision as of 07:56, 11 September 2013
Short description: | p12@SMAD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_SMAD3_5end |
Coexpression cluster: | NA |
Association with transcript: | -49bp_to_ENST00000327367, ENST00000535241_5end |
EntrezGene: | SMAD3 |
HGNC: | 6769 |
UniProt: | P84022 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of nephron | 1.60e-08 | 15 |
kidney cell | 3.19e-07 | 17 |
kidney epithelial cell | 3.19e-07 | 17 |
kidney cortical cell | 5.01e-07 | 12 |
renal cortical epithelial cell | 5.01e-07 | 12 |
kidney tubule cell | 5.20e-07 | 10 |
nephron tubule epithelial cell | 5.20e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
excretory tube | 3.00e-09 | 16 |
kidney epithelium | 3.00e-09 | 16 |
nephron epithelium | 1.60e-08 | 15 |
renal tubule | 1.60e-08 | 15 |
nephron tubule | 1.60e-08 | 15 |
nephron | 1.60e-08 | 15 |
uriniferous tubule | 1.60e-08 | 15 |
nephrogenic mesenchyme | 1.60e-08 | 15 |
cortex of kidney | 5.01e-07 | 12 |
renal parenchyma | 5.01e-07 | 12 |
nephron tubule epithelium | 5.20e-07 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.