FFCP PHASE1:Hg19::chr19:1584937..1584949,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=|TSSclassifier=S|UniProt=|association_with_transcript=-13bp_to_M77818_5end|coexpression_cluster_id=C2478|description=CAGE_peak_1_at_M77818_5end|id=chr19:1584937..1584949,-|ontology_enrichment_celltype=CL:0000039!2.54e-25!7;CL:0000586!2.54e-25!7;CL:0002541!1.99e-22!3;CL:0002536!7.84e-15!2;CL:0000349!2.36e-10!3;CL:0002577!2.36e-10!3|ontology_enrichment_celltype_v019=CL:0002541;7.10e-41;3!CL:0000349;1.88e-33;19!CL:0000039;9.36e-31;7!CL:0000586;9.36e-31;7!CL:0002577;2.32e-18;3!CL:0002536;8.32e-08;2|ontology_enrichment_celltype_v019_2=CL:0002541,6.64e-41,3;CL:0000349,1.93e-33,19;CL:0000039,9.73e-31,7;CL:0000586,9.73e-31,7;CL:0002577,2.32e-18,3;CL:0002536,9.19e-08,2|ontology_enrichment_development_v019=UBERON:0009117;1.18e-21;10!UBERON:0005564;1.18e-21;10!UBERON:0003124;7.13e-15;1|ontology_enrichment_disease=DOID:114!9.67e-15!2;DOID:178!4.72e-08!1;DOID:326!4.72e-08!1;DOID:3978!4.72e-08!1;DOID:3394!4.72e-08!1;DOID:5844!4.72e-08!1;DOID:3095!6.33e-08!22;DOID:2994!6.33e-08!22;DOID:1287!8.25e-08!4|ontology_enrichment_disease_v019=DOID:3095;5.25e-10;22!DOID:2994;5.25e-10;22!DOID:114;8.32e-08;2|ontology_enrichment_disease_v019_2=DOID:3095,5.31e-10,22;DOID:2994,5.31e-10,22;DOID:114,7.52e-08,2|ontology_enrichment_uberon=UBERON:0005631!8.57e-49!14;UBERON:0000158!8.57e-49!14;UBERON:0003124!1.93e-36!7;UBERON:0000478!8.81e-28!24;UBERON:0003135!1.71e-22!11;UBERON:0000476!1.99e-22!3;UBERON:0000920!1.99e-22!3;UBERON:0000473!5.91e-22!8;UBERON:0001987!1.27e-16!4;UBERON:0004340!1.27e-16!4;UBERON:0000305!3.88e-16!7;UBERON:0004923!1.91e-15!57;UBERON:0000007!2.07e-14!2;UBERON:0004871!3.82e-14!8;UBERON:0003101!5.33e-11!22;UBERON:0000079!5.33e-11!22;UBERON:0003133!1.84e-10!48;UBERON:0003978!8.17e-10!3;UBERON:0009751!8.17e-10!3;UBERON:0000946!8.17e-10!3;UBERON:0002523!8.17e-10!3;UBERON:0005983!8.17e-10!3;UBERON:0002165!8.17e-10!3;UBERON:0002062!8.17e-10!3;UBERON:0007280!8.17e-10!3;UBERON:0005156!3.02e-08!59;UBERON:0000990!3.02e-08!59;UBERON:0000991!3.02e-08!21;UBERON:0009196!3.02e-08!21;UBERON:0009117!3.02e-08!21;UBERON:0005564!3.02e-08!21;UBERON:0000989!3.83e-08!1;UBERON:0008811!3.83e-08!1;UBERON:0006258!3.83e-08!1;UBERON:0005876!3.83e-08!1;UBERON:0004874!3.83e-08!1;UBERON:0007029!4.11e-08!1;UBERON:0005705!5.07e-08!1;UBERON:0008193!5.07e-08!1;UBERON:0002514!5.07e-08!1;UBERON:0003462!5.07e-08!1;UBERON:0008001!5.07e-08!1;UBERON:0007914!5.07e-08!1;UBERON:0003457!5.07e-08!1;UBERON:0009292!5.07e-08!1;UBERON:0007375!5.07e-08!1;UBERON:0003323!5.07e-08!1;UBERON:0002397!5.07e-08!1;UBERON:0001709!5.07e-08!1;UBERON:0004066!5.07e-08!1;UBERON:0002244!5.07e-08!1;UBERON:0005620!5.07e-08!1;UBERON:0004068!5.07e-08!1;UBERON:0004362!5.07e-08!1;UBERON:0002135!5.43e-08!1;UBERON:0002146!5.82e-08!1;UBERON:0005623!5.82e-08!1;UBERON:0004176!7.34e-08!22;UBERON:0003296!1.20e-07!4;UBERON:0010133!1.20e-07!4|ontology_enrichment_uberon_v019=UBERON:0003124;7.10e-41;3!UBERON:0000920;7.10e-41;3!UBERON:0000478;1.79e-34;24!UBERON:0005631;3.97e-33;10!UBERON:0000158;3.97e-33;10!UBERON:0001987;3.17e-30;4!UBERON:0000473;5.76e-27;8!UBERON:0003135;1.02e-19;11!UBERON:0000991;1.80e-10;21!UBERON:0003101;5.25e-10;22!UBERON:0000079;5.25e-10;22!UBERON:0000305;2.07e-08;7|ontology_enrichment_uberon_v019_2=UBERON:0003124,8.01e-68,7;UBERON:0005631,1.91e-59,14;UBERON:0000158,1.91e-59,14;UBERON:0000920,6.64e-41,3;UBERON:0000478,1.83e-34,24;UBERON:0001987,3.17e-30,4;UBERON:0004340,3.17e-30,4;UBERON:0000473,5.95e-27,8;UBERON:0003135,1.04e-19,11;UBERON:0003133,4.95e-13,48;UBERON:0004923,4.23e-12,66;UBERON:0005156,1.68e-10,59;UBERON:0000990,1.68e-10,59;UBERON:0000991,1.82e-10,21;UBERON:0009196,1.82e-10,21;UBERON:0009117,1.82e-10,21;UBERON:0005564,1.82e-10,21;UBERON:0004176,5.31e-10,22;UBERON:0003101,5.31e-10,22;UBERON:0000079,5.31e-10,22;UBERON:0000305,2.15e-08,7;UBERON:0004871,1.88e-07,8|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.873765488520689,1.31883489114227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12189300012382,1.66435439510497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.50339439602256,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.0481834334015,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-13bp_to_M77818_5end | |||
|coexpression_cluster_id=C2478 | |||
|description=CAGE_peak_1_at_M77818_5end | |||
|id=chr19:1584937..1584949,- | |||
|ontology_enrichment_celltype=CL:0000039!2.54e-25!7;CL:0000586!2.54e-25!7;CL:0002541!1.99e-22!3;CL:0002536!7.84e-15!2;CL:0000349!2.36e-10!3;CL:0002577!2.36e-10!3 | |||
|ontology_enrichment_celltype_v019=CL:0002541;7.10e-41;3!CL:0000349;1.88e-33;19!CL:0000039;9.36e-31;7!CL:0000586;9.36e-31;7!CL:0002577;2.32e-18;3!CL:0002536;8.32e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,6.64e-41,3;CL:0000349,1.93e-33,19;CL:0000039,9.73e-31,7;CL:0000586,9.73e-31,7;CL:0002577,2.32e-18,3;CL:0002536,9.19e-08,2 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.18e-21;10!UBERON:0005564;1.18e-21;10!UBERON:0003124;7.13e-15;1 | |||
|ontology_enrichment_disease=DOID:114!9.67e-15!2;DOID:178!4.72e-08!1;DOID:326!4.72e-08!1;DOID:3978!4.72e-08!1;DOID:3394!4.72e-08!1;DOID:5844!4.72e-08!1;DOID:3095!6.33e-08!22;DOID:2994!6.33e-08!22;DOID:1287!8.25e-08!4 | |||
|ontology_enrichment_disease_v019=DOID:3095;5.25e-10;22!DOID:2994;5.25e-10;22!DOID:114;8.32e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,5.31e-10,22;DOID:2994,5.31e-10,22;DOID:114,7.52e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0005631!8.57e-49!14;UBERON:0000158!8.57e-49!14;UBERON:0003124!1.93e-36!7;UBERON:0000478!8.81e-28!24;UBERON:0003135!1.71e-22!11;UBERON:0000476!1.99e-22!3;UBERON:0000920!1.99e-22!3;UBERON:0000473!5.91e-22!8;UBERON:0001987!1.27e-16!4;UBERON:0004340!1.27e-16!4;UBERON:0000305!3.88e-16!7;UBERON:0004923!1.91e-15!57;UBERON:0000007!2.07e-14!2;UBERON:0004871!3.82e-14!8;UBERON:0003101!5.33e-11!22;UBERON:0000079!5.33e-11!22;UBERON:0003133!1.84e-10!48;UBERON:0003978!8.17e-10!3;UBERON:0009751!8.17e-10!3;UBERON:0000946!8.17e-10!3;UBERON:0002523!8.17e-10!3;UBERON:0005983!8.17e-10!3;UBERON:0002165!8.17e-10!3;UBERON:0002062!8.17e-10!3;UBERON:0007280!8.17e-10!3;UBERON:0005156!3.02e-08!59;UBERON:0000990!3.02e-08!59;UBERON:0000991!3.02e-08!21;UBERON:0009196!3.02e-08!21;UBERON:0009117!3.02e-08!21;UBERON:0005564!3.02e-08!21;UBERON:0000989!3.83e-08!1;UBERON:0008811!3.83e-08!1;UBERON:0006258!3.83e-08!1;UBERON:0005876!3.83e-08!1;UBERON:0004874!3.83e-08!1;UBERON:0007029!4.11e-08!1;UBERON:0005705!5.07e-08!1;UBERON:0008193!5.07e-08!1;UBERON:0002514!5.07e-08!1;UBERON:0003462!5.07e-08!1;UBERON:0008001!5.07e-08!1;UBERON:0007914!5.07e-08!1;UBERON:0003457!5.07e-08!1;UBERON:0009292!5.07e-08!1;UBERON:0007375!5.07e-08!1;UBERON:0003323!5.07e-08!1;UBERON:0002397!5.07e-08!1;UBERON:0001709!5.07e-08!1;UBERON:0004066!5.07e-08!1;UBERON:0002244!5.07e-08!1;UBERON:0005620!5.07e-08!1;UBERON:0004068!5.07e-08!1;UBERON:0004362!5.07e-08!1;UBERON:0002135!5.43e-08!1;UBERON:0002146!5.82e-08!1;UBERON:0005623!5.82e-08!1;UBERON:0004176!7.34e-08!22;UBERON:0003296!1.20e-07!4;UBERON:0010133!1.20e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;7.10e-41;3!UBERON:0000920;7.10e-41;3!UBERON:0000478;1.79e-34;24!UBERON:0005631;3.97e-33;10!UBERON:0000158;3.97e-33;10!UBERON:0001987;3.17e-30;4!UBERON:0000473;5.76e-27;8!UBERON:0003135;1.02e-19;11!UBERON:0000991;1.80e-10;21!UBERON:0003101;5.25e-10;22!UBERON:0000079;5.25e-10;22!UBERON:0000305;2.07e-08;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003124,8.01e-68,7;UBERON:0005631,1.91e-59,14;UBERON:0000158,1.91e-59,14;UBERON:0000920,6.64e-41,3;UBERON:0000478,1.83e-34,24;UBERON:0001987,3.17e-30,4;UBERON:0004340,3.17e-30,4;UBERON:0000473,5.95e-27,8;UBERON:0003135,1.04e-19,11;UBERON:0003133,4.95e-13,48;UBERON:0004923,4.23e-12,66;UBERON:0005156,1.68e-10,59;UBERON:0000990,1.68e-10,59;UBERON:0000991,1.82e-10,21;UBERON:0009196,1.82e-10,21;UBERON:0009117,1.82e-10,21;UBERON:0005564,1.82e-10,21;UBERON:0004176,5.31e-10,22;UBERON:0003101,5.31e-10,22;UBERON:0000079,5.31e-10,22;UBERON:0000305,2.15e-08,7;UBERON:0004871,1.88e-07,8 | |||
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|short_description=p1@M77818 | |||
}} |
Revision as of 19:11, 11 September 2013
Short description: | p1@M77818 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_M77818_5end |
Coexpression cluster: | C2478_testicular_chorionic_placenta_anaplastic_amniotic_choriocarcinoma_Placental |
Association with transcript: | -13bp_to_M77818_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 6.64e-41 | 3 |
extraembryonic cell | 1.93e-33 | 19 |
germ line cell | 9.73e-31 | 7 |
germ cell | 9.73e-31 | 7 |
placental epithelial cell | 2.32e-18 | 3 |
amniotic epithelial cell | 9.19e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
chorion | 8.01e-68 | 7 |
extraembryonic membrane | 1.91e-59 | 14 |
membranous layer | 1.91e-59 | 14 |
egg chorion | 6.64e-41 | 3 |
extraembryonic structure | 1.83e-34 | 24 |
placenta | 3.17e-30 | 4 |
allantois | 3.17e-30 | 4 |
testis | 5.95e-27 | 8 |
male reproductive organ | 1.04e-19 | 11 |
reproductive organ | 4.95e-13 | 48 |
organ component layer | 4.23e-12 | 66 |
reproductive structure | 1.68e-10 | 59 |
reproductive system | 1.68e-10 | 59 |
gonad | 1.82e-10 | 21 |
indifferent external genitalia | 1.82e-10 | 21 |
indifferent gonad | 1.82e-10 | 21 |
gonad primordium | 1.82e-10 | 21 |
external genitalia | 5.31e-10 | 22 |
male organism | 5.31e-10 | 22 |
male reproductive system | 5.31e-10 | 22 |
amnion | 2.15e-08 | 7 |
somatic layer of lateral plate mesoderm | 1.88e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 5.31e-10 | 22 |
germ cell cancer | 5.31e-10 | 22 |
heart disease | 7.52e-08 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.