FFCP PHASE1:Hg19::chr1:183559882..183559940,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4688|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7661|TSSclassifier=S|UniProt=E9PHX3,E9PHJ2,P19878,B4DKQ7,B4DQA7|association_with_transcript=-143bp_to_ENST00000392014,ENST00000413720,ENST00000418089,NM_000433,NM_001190789,NM_001190794,uc001gqj.3,uc010pod.1,uc010poe.1_5end|coexpression_cluster_id=C3669|description=CAGE_peak_9_at_NCF2_5end|id=chr1:183559882..183559940,-|ontology_enrichment_celltype=CL:0000738!2.10e-37!140;CL:0002087!6.34e-34!119;CL:0000766!8.77e-33!76;CL:0002009!1.01e-31!65;CL:0002194!1.60e-31!63;CL:0000576!1.60e-31!63;CL:0000040!1.60e-31!63;CL:0000559!1.60e-31!63;CL:0002057!3.46e-31!42;CL:0000037!5.92e-31!172;CL:0000566!5.92e-31!172;CL:0000860!8.06e-31!45;CL:0002032!1.56e-30!165;CL:0000837!1.56e-30!165;CL:0000988!1.81e-30!182;CL:0002031!2.00e-29!124;CL:0000557!1.74e-27!71;CL:0000839!1.43e-26!70;CL:0000763!3.42e-26!112;CL:0000049!3.42e-26!112;CL:0002159!2.05e-07!13|ontology_enrichment_celltype_v019=CL:0000860;4.41e-34;33!CL:0002057;4.41e-34;33!CL:0000473;1.26e-29;39!CL:0000234;1.26e-29;39!CL:0000576;1.29e-15;48!CL:0000766;1.65e-11;69!CL:0000738;1.81e-09;136!CL:0002621;1.45e-08;3!CL:0002159;9.40e-08;14!CL:0000840;1.92e-07;5!CL:0002087;2.53e-07;104!CL:0000990;3.57e-07;8|ontology_enrichment_celltype_v019_2=CL:0000473,2.28e-31,48;CL:0000234,2.28e-31,48;CL:0002009,2.61e-31,61;CL:0000766,3.44e-31,72;CL:0002194,2.47e-30,59;CL:0000576,2.47e-30,59;CL:0000040,2.47e-30,59;CL:0000559,2.47e-30,59;CL:0000860,1.45e-28,42;CL:0002057,1.45e-28,42;CL:0000557,9.96e-28,67;CL:0000839,3.16e-26,66;CL:0000738,1.16e-25,136;CL:0002031,5.66e-23,120;CL:0002087,5.81e-23,115;CL:0000763,2.41e-20,108;CL:0000049,2.41e-20,108;CL:0002032,9.07e-20,161;CL:0000837,9.07e-20,161;CL:0000988,7.16e-19,177;CL:0000037,1.94e-18,168;CL:0002621,1.80e-08,3;CL:0002159,9.49e-08,14;CL:0000840,1.73e-07,5;CL:0001029,1.73e-07,5;CL:0000990,3.27e-07,8;CL:0000362,9.51e-07,9|ontology_enrichment_development_v019=CL:0002057;5.65e-21;42!CL:0000049;4.01e-07;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!3.06e-35!102;UBERON:0003061!3.06e-35!102;UBERON:0002193!5.24e-32!112;UBERON:0002371!2.44e-23!80;UBERON:0001474!1.80e-20!86;UBERON:0004765!1.19e-17!101;UBERON:0001434!1.19e-17!101;UBERON:0002405!1.32e-16!115;UBERON:0000178!1.45e-10!15;UBERON:0000179!1.45e-10!15;UBERON:0000463!1.45e-10!15;UBERON:0003081!1.29e-07!216|ontology_enrichment_uberon_v019=UBERON:0000178;7.84e-09;15!UBERON:0000179;7.84e-09;15!UBERON:0000463;7.84e-09;15!UBERON:0001949;1.45e-08;3|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.15e-30,98;UBERON:0003061,5.15e-30,98;UBERON:0002193,3.33e-26,108;UBERON:0002371,2.03e-23,76;UBERON:0001474,4.50e-21,82;UBERON:0004765,5.07e-20,90;UBERON:0002405,4.17e-19,93;UBERON:0001434,3.86e-17,100;UBERON:0003081,9.44e-10,203;UBERON:0000178,7.65e-09,15;UBERON:0000179,7.65e-09,15;UBERON:0000463,7.65e-09,15;UBERON:0001949,1.80e-08,3;UBERON:0002204,5.24e-07,167|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0,0,0,0,0,0,14.5185470921107,15.3528102271399,10.547244696033,0.393364276848904,0.767658796194425,0.154816123316076,0,0.30120591877825,0.739508020333575,0.0774672005803016,0,0,0,0.802177789880567,0.434021741431704,0.447830948479849,0.32389366601898,0.257575567634187,1.59938062657521,1.88937971844405,0.970336244751265,1.85943229524548,3.70051099219643,1.23882548358041,2.01384674625505,0.768482119587302,1.18241114944293,0.689491361473237,1.93645405075148,0,2.07066573496865,2.18324920046277,1.57306439111559,1.53041946185451,3.85114832491312,1.91801137739712,2.30895910130701,1.39624560335142,3.40979800426155,3.19230162491442,4.53908179752912,1.24564449799115,1.25624332628372,3.12889751052121,0.868755378820466,3.02699751316684,6.2607198117886,3.16462387440884,0.422510572623884,0,0.209658645508376,0.22465726229299,0.450530678524519,0.16072558669708,0.570025487482497,0.19891667719909,0.365328307529268,1.75996244461323,0,0.889509253863555,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0.393010762749165,0.822405995998037,2.67498392625085,0,0,0,1.44833593950726,0.294605907474837,0.886135578334485,1.08321545506006,1.92136979588513,2.60118695119756,0,0.829050053357545,1.44901542867526,0.14828656316206,0.267540828089713,0,0.679856056185397,0,0.68725489096526,0.506039384039006,0,0,0,0.451725357233318,0.127986611154418,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,1.09288586487763,0.370784442784429,9.7364218096405,11.1443031871531,8.90818335476397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.7978255948989,5.18217629122586,2.00763216772303,0,0,0,0,0,0,0,0,0,0,0,0,0,0.482022059766964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53650399572076,6.74410519545717,2.81481122752566,0,0,0,0,0,0,0,0,0.380508304469197,0,0,0.246217006087397,4.44608103764552,2.22946743433092,10.3107217385455,0.503946384596579,0.425325291727159,0.358234090811393,0.581267877027924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43247561282381,0,0,0,0,0,0,0,0,0.224170287987055,0,0,0.128343036279748,0,0,0,0,0,2.24702107184155,0,6.63064821497657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.862856803274467,0.853820462427555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.40101294060657,1.01289087829486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,2.29706215198469,3.25030123018261,0,0,0,0,0,0,0,0,0,1.32227932288782,0.384380134730212,0.382838137483752,1.0115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0,0,0,0,0.673554789078584,1.34060455107157,0,0,0,0,0.443430153536676,0.459446800413919,1.01489521846434,3.82318603571188,2.84823593587081,0.714695326373367,0,1.94541993357815,3.24018862342869,3.17250070517708,0,0,0.980160863924127,0,0,0,0,0,0.191505370132367,0,0,0.561594356226918,0.684704037099577,0,0,0.169291777801603,0,0,0.425846237690326,0.687010689511529,0,0,0,0,0,0,0,0,0,0,0,0,1.78309414843965,0,0,0,0,0,0,0,0,0,0,0,0,0,5.29264663482599,0,0.269605053441981,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0.341380344856499,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,1.67308493134324,0.153900517007594,0,0,0,0,0.31900115973192,0,0,0,0,0.166211681900156,0,0,0,0,0,0,0,0,0,0,0,0,1.48260564340311,1.11207545051853,0.522109747527277,0,0,0,0.182454789215666,0.391329237864179,0,0,0,0,0.063186579628488,0,0,0,0,0.313932918407225,0,0,0,0,1.66587075604442,0.0870592065804026,0,0,0,0.0730893170861856,0.0821154570532092,0.387956065953678,0,0,0,0,0.0633107959558787,0.195551382734803,0.0801588202515337,0,0.19980960958213,0,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0,7.36657988972325,0,0,0,0,0,2.69968669861801,0,0,2.34804281319486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0.106787412567695,0,0.414239055347196,0,0.790446527591777,0.60896299190448,3.19170628885091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0.168942440653073,0,0,0,0,2.33832370607266,0.664324201566815,0.654261577023377,0,0,0,0.19998739585493,0,0.172214979660816,0,0,4.19638523158333,1.86623178009892,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.588886311006154,0,4.21885776599862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,2.57236873471653,1.26757386311357,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0.414432328326074,0.85359238546975,2.07377898544228,0,0,0,0,0.22910686854405,0,0,0,0,0.365753774946808,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0,0.0939839179798536,0.257831551894309,15.490879168364,1.42843150884526,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61193297845189,0,0.36757959813938,0.250707539292375,0,0,0,0,0.213233981900981,0,0.129177819672012,0.186224142887574,0,0,0,1.08858373948481,0,0.26940821205835,0.143444410785353,0,0.0814032686109745,0,0,0,0,0,0,0,0.201273793591026,5.77023286145819|short_description=p9@NCF2}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=4688 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7661 | |||
|TSSclassifier=S | |||
|UniProt=E9PHX3,E9PHJ2,P19878,B4DKQ7,B4DQA7 | |||
|association_with_transcript=-143bp_to_ENST00000392014,ENST00000413720,ENST00000418089,NM_000433,NM_001190789,NM_001190794,uc001gqj.3,uc010pod.1,uc010poe.1_5end | |||
|coexpression_cluster_id=C3669 | |||
|description=CAGE_peak_9_at_NCF2_5end | |||
|id=chr1:183559882..183559940,- | |||
|ontology_enrichment_celltype=CL:0000738!2.10e-37!140;CL:0002087!6.34e-34!119;CL:0000766!8.77e-33!76;CL:0002009!1.01e-31!65;CL:0002194!1.60e-31!63;CL:0000576!1.60e-31!63;CL:0000040!1.60e-31!63;CL:0000559!1.60e-31!63;CL:0002057!3.46e-31!42;CL:0000037!5.92e-31!172;CL:0000566!5.92e-31!172;CL:0000860!8.06e-31!45;CL:0002032!1.56e-30!165;CL:0000837!1.56e-30!165;CL:0000988!1.81e-30!182;CL:0002031!2.00e-29!124;CL:0000557!1.74e-27!71;CL:0000839!1.43e-26!70;CL:0000763!3.42e-26!112;CL:0000049!3.42e-26!112;CL:0002159!2.05e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.41e-34;33!CL:0002057;4.41e-34;33!CL:0000473;1.26e-29;39!CL:0000234;1.26e-29;39!CL:0000576;1.29e-15;48!CL:0000766;1.65e-11;69!CL:0000738;1.81e-09;136!CL:0002621;1.45e-08;3!CL:0002159;9.40e-08;14!CL:0000840;1.92e-07;5!CL:0002087;2.53e-07;104!CL:0000990;3.57e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,2.28e-31,48;CL:0000234,2.28e-31,48;CL:0002009,2.61e-31,61;CL:0000766,3.44e-31,72;CL:0002194,2.47e-30,59;CL:0000576,2.47e-30,59;CL:0000040,2.47e-30,59;CL:0000559,2.47e-30,59;CL:0000860,1.45e-28,42;CL:0002057,1.45e-28,42;CL:0000557,9.96e-28,67;CL:0000839,3.16e-26,66;CL:0000738,1.16e-25,136;CL:0002031,5.66e-23,120;CL:0002087,5.81e-23,115;CL:0000763,2.41e-20,108;CL:0000049,2.41e-20,108;CL:0002032,9.07e-20,161;CL:0000837,9.07e-20,161;CL:0000988,7.16e-19,177;CL:0000037,1.94e-18,168;CL:0002621,1.80e-08,3;CL:0002159,9.49e-08,14;CL:0000840,1.73e-07,5;CL:0001029,1.73e-07,5;CL:0000990,3.27e-07,8;CL:0000362,9.51e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;5.65e-21;42!CL:0000049;4.01e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.06e-35!102;UBERON:0003061!3.06e-35!102;UBERON:0002193!5.24e-32!112;UBERON:0002371!2.44e-23!80;UBERON:0001474!1.80e-20!86;UBERON:0004765!1.19e-17!101;UBERON:0001434!1.19e-17!101;UBERON:0002405!1.32e-16!115;UBERON:0000178!1.45e-10!15;UBERON:0000179!1.45e-10!15;UBERON:0000463!1.45e-10!15;UBERON:0003081!1.29e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;7.84e-09;15!UBERON:0000179;7.84e-09;15!UBERON:0000463;7.84e-09;15!UBERON:0001949;1.45e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.15e-30,98;UBERON:0003061,5.15e-30,98;UBERON:0002193,3.33e-26,108;UBERON:0002371,2.03e-23,76;UBERON:0001474,4.50e-21,82;UBERON:0004765,5.07e-20,90;UBERON:0002405,4.17e-19,93;UBERON:0001434,3.86e-17,100;UBERON:0003081,9.44e-10,203;UBERON:0000178,7.65e-09,15;UBERON:0000179,7.65e-09,15;UBERON:0000463,7.65e-09,15;UBERON:0001949,1.80e-08,3;UBERON:0002204,5.24e-07,167 | |||
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| |||
|short_description=p9@NCF2 | |||
}} |
Revision as of 02:14, 12 September 2013
Short description: | p9@NCF2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_NCF2_5end |
Coexpression cluster: | C3669_B_Dendritic_splenic_adult_xeroderma_hereditary_b |
Association with transcript: | -143bp_to_ENST00000392014, ENST00000413720, ENST00000418089, NM_000433, NM_001190789, NM_001190794, uc001gqj.3, uc010pod.1, uc010poe.1_5end |
EntrezGene: | NCF2 |
HGNC: | 7661 |
UniProt: | E9PHX3E9PHJ2P19878B4DKQ7B4DQA7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 2.28e-31 | 48 |
phagocyte | 2.28e-31 | 48 |
macrophage dendritic cell progenitor | 2.61e-31 | 61 |
myeloid leukocyte | 3.44e-31 | 72 |
monopoietic cell | 2.47e-30 | 59 |
monocyte | 2.47e-30 | 59 |
monoblast | 2.47e-30 | 59 |
promonocyte | 2.47e-30 | 59 |
classical monocyte | 1.45e-28 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.45e-28 | 42 |
granulocyte monocyte progenitor cell | 9.96e-28 | 67 |
myeloid lineage restricted progenitor cell | 3.16e-26 | 66 |
leukocyte | 1.16e-25 | 136 |
hematopoietic lineage restricted progenitor cell | 5.66e-23 | 120 |
nongranular leukocyte | 5.81e-23 | 115 |
myeloid cell | 2.41e-20 | 108 |
common myeloid progenitor | 2.41e-20 | 108 |
hematopoietic oligopotent progenitor cell | 9.07e-20 | 161 |
hematopoietic multipotent progenitor cell | 9.07e-20 | 161 |
hematopoietic cell | 7.16e-19 | 177 |
hematopoietic stem cell | 1.94e-18 | 168 |
gingival epithelial cell | 1.80e-08 | 3 |
general ecto-epithelial cell | 9.49e-08 | 14 |
immature conventional dendritic cell | 1.73e-07 | 5 |
common dendritic progenitor | 1.73e-07 | 5 |
conventional dendritic cell | 3.27e-07 | 8 |
epidermal cell | 9.51e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 5.15e-30 | 98 |
blood island | 5.15e-30 | 98 |
hemolymphoid system | 3.33e-26 | 108 |
bone marrow | 2.03e-23 | 76 |
bone element | 4.50e-21 | 82 |
skeletal element | 5.07e-20 | 90 |
immune system | 4.17e-19 | 93 |
skeletal system | 3.86e-17 | 100 |
lateral plate mesoderm | 9.44e-10 | 203 |
blood | 7.65e-09 | 15 |
haemolymphatic fluid | 7.65e-09 | 15 |
organism substance | 7.65e-09 | 15 |
gingival epithelium | 1.80e-08 | 3 |
musculoskeletal system | 5.24e-07 | 167 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.