FFCP PHASE1:Hg19::chr1:228290095..228290116,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C19|description=CAGE_peak_at_chr1:228290095..228290116,-|id=chr1:228290095..228290116,-|ontology_enrichment_celltype=CL:0002139!9.14e-13!24;CL:0002321!2.08e-10!248;CL:0000220!2.56e-10!246;CL:0000066!3.28e-10!254;CL:0000115!5.53e-10!35;CL:0000071!2.37e-09!18;CL:0002546!2.37e-09!18;CL:0000213!1.38e-08!57;CL:0000215!1.38e-08!57;CL:0000222!1.48e-08!119;CL:0002078!3.00e-08!44;CL:1000413!7.26e-08!9;CL:0000548!2.48e-07!679;CL:0000004!2.48e-07!679;CL:0000255!2.48e-07!679;CL:0000076!2.73e-07!62;CL:0000012!4.59e-07!682|ontology_enrichment_celltype_v019=CL:0002144;7.97e-34;3!CL:0002139;5.80e-22;24!CL:0000071;8.03e-22;18!CL:0002544;2.88e-17;6!CL:0000115;2.97e-17;36!CL:0002078;2.90e-16;45!CL:0002594;6.02e-12;4!CL:1000413;1.03e-11;9!CL:0000213;4.33e-09;58!CL:0000215;4.33e-09;58!CL:0002363;5.26e-07;2!CL:0002262;8.52e-07;2!CL:1000398;8.52e-07;2|ontology_enrichment_celltype_v019_2=CL:0002144,6.76e-34,3;CL:0000115,4.95e-24,36;CL:0002139,3.59e-22,24;CL:0000071,5.58e-22,18;CL:0002546,5.58e-22,18;CL:0002078,5.13e-19,45;CL:0002544,1.80e-17,6;CL:0000213,1.64e-14,58;CL:0000215,1.64e-14,58;CL:0002594,6.03e-12,4;CL:1000413,7.57e-12,9;CL:0000222,1.27e-09,121;CL:0002363,5.41e-07,2;CL:0000008,5.41e-07,2;CL:0002262,7.20e-07,2;CL:1000398,7.20e-07,2|ontology_enrichment_development_v019=CL:0002546;8.03e-22;18!CL:0000008;5.26e-07;2|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000055!3.40e-11!69;UBERON:0002049!4.45e-10!79;UBERON:0007798!4.45e-10!79;UBERON:0001981!1.45e-09!60;UBERON:0007500!1.45e-09!60;UBERON:0004537!1.45e-09!60;UBERON:0006965!1.45e-09!60;UBERON:0001986!2.37e-09!18;UBERON:0004638!2.37e-09!18;UBERON:0004852!2.37e-09!18;UBERON:0000487!2.60e-09!22;UBERON:0004872!3.45e-08!84;UBERON:0003914!5.95e-08!118;UBERON:0003915!7.26e-08!9;UBERON:0004700!7.26e-08!9;UBERON:0001917!7.26e-08!9;UBERON:0004535!9.53e-08!110;UBERON:0001637!1.39e-07!42;UBERON:0003509!1.39e-07!42;UBERON:0004572!1.39e-07!42;UBERON:0006914!1.52e-07!25;UBERON:0001009!3.42e-07!113|ontology_enrichment_uberon_v019=UBERON:0010523;7.97e-34;3!UBERON:0001915;7.97e-34;3!UBERON:0001982;7.97e-34;3!UBERON:0004638;8.03e-22;18!UBERON:0001986;8.03e-22;18!UBERON:0004852;8.03e-22;18!UBERON:0000487;8.40e-18;22!UBERON:0006914;1.25e-15;25!UBERON:0001310;6.02e-12;4!UBERON:0003915;1.03e-11;9!UBERON:0004700;1.03e-11;9!UBERON:0001917;1.03e-11;9!UBERON:0000490;1.57e-11;33!UBERON:0000055;6.55e-10;65!UBERON:0007500;3.72e-09;56!UBERON:0001981;3.72e-09;56!UBERON:0004537;3.72e-09;56!UBERON:0003566;5.26e-07;2!UBERON:0001777;5.26e-07;2!UBERON:0001281;8.52e-07;2!UBERON:0003497;8.52e-07;2!UBERON:0003909;8.52e-07;2!UBERON:0003835;8.52e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0010523,6.76e-34,3;UBERON:0001915,6.76e-34,3;UBERON:0001982,6.76e-34,3;UBERON:0004638,5.58e-22,18;UBERON:0001986,5.58e-22,18;UBERON:0004852,5.58e-22,18;UBERON:0000487,6.25e-18,22;UBERON:0006914,9.67e-16,25;UBERON:0000055,4.97e-15,68;UBERON:0007500,3.80e-14,59;UBERON:0001981,3.80e-14,59;UBERON:0004537,3.80e-14,59;UBERON:0006965,3.80e-14,59;UBERON:0002049,6.19e-13,78;UBERON:0007798,6.19e-13,78;UBERON:0001310,6.03e-12,4;UBERON:0003915,7.57e-12,9;UBERON:0004700,7.57e-12,9;UBERON:0001917,7.57e-12,9;UBERON:0004872,9.88e-10,83;UBERON:0004535,7.15e-09,109;UBERON:0001009,1.34e-08,112;UBERON:0003914,3.46e-08,117;UBERON:0003566,5.41e-07,2;UBERON:0001777,5.41e-07,2;UBERON:0001281,7.20e-07,2;UBERON:0003497,7.20e-07,2;UBERON:0003909,7.20e-07,2;UBERON:0003835,7.20e-07,2|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0.737201809504527,2.79120467188971,0.218441372130172,0,0,0,0.672325146451775,0.602694528023977,0,0.975865597581014,0.123121058076788,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0.919421224478927,0,0.739508020333575,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0.188242339542605,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0.205601498999509,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0.766440987203842,0.68725489096526,0.506039384039006,0,0,0,0,0.127986611154418,0,0,0,0.201606743224732,0.267440195783507,0.434473211648397,0,0,0.12786256184353,0,0,0,0,0,0.0945348171640679,0,0,0,0.728590576585084,0.370784442784429,0,0,0.132957960518865,0.238490624305342,0.571994910780128,0.371457501329565,0.39752481473341,1.72046919021225,1.38856200643038,2.82653970962005,0.838998872419812,0.550236083880135,0.626984899610432,1.55050055501597,0.71153252537342,0.33472061276467,2.01414658554573,1.52054421143703,1.22031028774085,0.735326160691737,0,0.267899184852239,0,0.112611480483322,0,0,0.183201743930407,0,0,0,0,0,0.132409180813219,0,0,0,0,0.24666754841716,0,0.404132016209064,0,0.151357427644931,0,0.234321431833797,0.312160076830321,0,0.448346041655403,0,0.32374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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C19 | |||
|description=CAGE_peak_at_chr1:228290095..228290116,- | |||
|id=chr1:228290095..228290116,- | |||
|ontology_enrichment_celltype=CL:0002139!9.14e-13!24;CL:0002321!2.08e-10!248;CL:0000220!2.56e-10!246;CL:0000066!3.28e-10!254;CL:0000115!5.53e-10!35;CL:0000071!2.37e-09!18;CL:0002546!2.37e-09!18;CL:0000213!1.38e-08!57;CL:0000215!1.38e-08!57;CL:0000222!1.48e-08!119;CL:0002078!3.00e-08!44;CL:1000413!7.26e-08!9;CL:0000548!2.48e-07!679;CL:0000004!2.48e-07!679;CL:0000255!2.48e-07!679;CL:0000076!2.73e-07!62;CL:0000012!4.59e-07!682 | |||
|ontology_enrichment_celltype_v019=CL:0002144;7.97e-34;3!CL:0002139;5.80e-22;24!CL:0000071;8.03e-22;18!CL:0002544;2.88e-17;6!CL:0000115;2.97e-17;36!CL:0002078;2.90e-16;45!CL:0002594;6.02e-12;4!CL:1000413;1.03e-11;9!CL:0000213;4.33e-09;58!CL:0000215;4.33e-09;58!CL:0002363;5.26e-07;2!CL:0002262;8.52e-07;2!CL:1000398;8.52e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002144,6.76e-34,3;CL:0000115,4.95e-24,36;CL:0002139,3.59e-22,24;CL:0000071,5.58e-22,18;CL:0002546,5.58e-22,18;CL:0002078,5.13e-19,45;CL:0002544,1.80e-17,6;CL:0000213,1.64e-14,58;CL:0000215,1.64e-14,58;CL:0002594,6.03e-12,4;CL:1000413,7.57e-12,9;CL:0000222,1.27e-09,121;CL:0002363,5.41e-07,2;CL:0000008,5.41e-07,2;CL:0002262,7.20e-07,2;CL:1000398,7.20e-07,2 | |||
|ontology_enrichment_development_v019=CL:0002546;8.03e-22;18!CL:0000008;5.26e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000055!3.40e-11!69;UBERON:0002049!4.45e-10!79;UBERON:0007798!4.45e-10!79;UBERON:0001981!1.45e-09!60;UBERON:0007500!1.45e-09!60;UBERON:0004537!1.45e-09!60;UBERON:0006965!1.45e-09!60;UBERON:0001986!2.37e-09!18;UBERON:0004638!2.37e-09!18;UBERON:0004852!2.37e-09!18;UBERON:0000487!2.60e-09!22;UBERON:0004872!3.45e-08!84;UBERON:0003914!5.95e-08!118;UBERON:0003915!7.26e-08!9;UBERON:0004700!7.26e-08!9;UBERON:0001917!7.26e-08!9;UBERON:0004535!9.53e-08!110;UBERON:0001637!1.39e-07!42;UBERON:0003509!1.39e-07!42;UBERON:0004572!1.39e-07!42;UBERON:0006914!1.52e-07!25;UBERON:0001009!3.42e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0010523;7.97e-34;3!UBERON:0001915;7.97e-34;3!UBERON:0001982;7.97e-34;3!UBERON:0004638;8.03e-22;18!UBERON:0001986;8.03e-22;18!UBERON:0004852;8.03e-22;18!UBERON:0000487;8.40e-18;22!UBERON:0006914;1.25e-15;25!UBERON:0001310;6.02e-12;4!UBERON:0003915;1.03e-11;9!UBERON:0004700;1.03e-11;9!UBERON:0001917;1.03e-11;9!UBERON:0000490;1.57e-11;33!UBERON:0000055;6.55e-10;65!UBERON:0007500;3.72e-09;56!UBERON:0001981;3.72e-09;56!UBERON:0004537;3.72e-09;56!UBERON:0003566;5.26e-07;2!UBERON:0001777;5.26e-07;2!UBERON:0001281;8.52e-07;2!UBERON:0003497;8.52e-07;2!UBERON:0003909;8.52e-07;2!UBERON:0003835;8.52e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010523,6.76e-34,3;UBERON:0001915,6.76e-34,3;UBERON:0001982,6.76e-34,3;UBERON:0004638,5.58e-22,18;UBERON:0001986,5.58e-22,18;UBERON:0004852,5.58e-22,18;UBERON:0000487,6.25e-18,22;UBERON:0006914,9.67e-16,25;UBERON:0000055,4.97e-15,68;UBERON:0007500,3.80e-14,59;UBERON:0001981,3.80e-14,59;UBERON:0004537,3.80e-14,59;UBERON:0006965,3.80e-14,59;UBERON:0002049,6.19e-13,78;UBERON:0007798,6.19e-13,78;UBERON:0001310,6.03e-12,4;UBERON:0003915,7.57e-12,9;UBERON:0004700,7.57e-12,9;UBERON:0001917,7.57e-12,9;UBERON:0004872,9.88e-10,83;UBERON:0004535,7.15e-09,109;UBERON:0001009,1.34e-08,112;UBERON:0003914,3.46e-08,117;UBERON:0003566,5.41e-07,2;UBERON:0001777,5.41e-07,2;UBERON:0001281,7.20e-07,2;UBERON:0003497,7.20e-07,2;UBERON:0003909,7.20e-07,2;UBERON:0003835,7.20e-07,2 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0.737201809504527,2.79120467188971,0.218441372130172,0,0,0,0.672325146451775,0.602694528023977,0,0.975865597581014,0.123121058076788,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0.919421224478927,0,0.739508020333575,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0.188242339542605,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0.205601498999509,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0.766440987203842,0.68725489096526,0.506039384039006,0,0,0,0,0.127986611154418,0,0,0,0.201606743224732,0.267440195783507,0.434473211648397,0,0,0.12786256184353,0,0,0,0,0,0.0945348171640679,0,0,0,0.728590576585084,0.370784442784429,0,0,0.132957960518865,0.238490624305342,0.571994910780128,0.371457501329565,0.39752481473341,1.72046919021225,1.38856200643038,2.82653970962005,0.838998872419812,0.550236083880135,0.626984899610432,1.55050055501597,0.71153252537342,0.33472061276467,2.01414658554573,1.52054421143703,1.22031028774085,0.735326160691737,0,0.267899184852239,0,0.112611480483322,0,0,0.183201743930407,0,0,0,0,0,0.132409180813219,0,0,0,0,0.24666754841716,0,0.404132016209064,0,0.151357427644931,0,0.234321431833797,0.312160076830321,0,0.448346041655403,0,0.323745888736263,0,0.408308342509787,0,0.206651562351531,0,0,0,0,0,0,0.277064115484183,0,0,0,0.113432183160021,0,0,0,0,0.103052529238439,0,0.18611685633159,0.337552664482532,0.0974370051611986,0.252433774244115,0,0,0.355009592516614,0,0.169560592310488,0,0.545492241181669,1.14721838155602,0,0.132529768321485,0,0.10366105501537,0,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,1.4763109092493,0,0,0,0,0,0,0,0.245976877086227,0,0.219500570817251,0,0,0,0,2.07986957055916,0,0,0.234817388471643,0.721832238805369,0.925971025153221,0,0,0,0,0,0.148631162288728,0,0.16798212819886,0.141775097242386,0,0,0.383382679165211,0.492663237895943,0.088048434013226,0,0,0.12624243342638,0,0,0,0,0,0,0,0.112131084345361,0,0.07333828582095,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.199945982364114,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0.672510863961164,0,0.215627574859517,0.128343036279748,0.508189248444927,0,0,0.167516265334349,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0.173767228936166,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0.164254312027618,0,0,0.120859449591622,0.601519410909855,0.0920809889358963,0,0,0,0,0.15403067420883,0,0,0.316654886678627,0,0.680374821106063,0,0,0.541892875087706,0.501689773854853,0,0,0.671624264166535,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0,0.145016693914229,0,0,0.826424576804891,1.34533047155574,0.127612712494584,0.6069466851333,0,0.31481234683064,0,0,0,0.869932992075073,0.37064843820784,0,0,0,0,0,0,0,0,0,0,0,0.404364963146632,0,0.842516912477962,0,0.243713489631284,0,0,0.141405431953713,0,0,0.66343897524122,0,0.578775534266688,0,1.21746226177622,0,0.563391205064483,0.143411352204052,0.0982490410131212,1.426684205925,0,0,0,0,0.349934720244983,0.288666338176536,0,0,0,0.86101074534246,0,0,0.689170200620878,0,0,0,0,0,0.648473311192717,0,0,0,0,0,0,0.144269212976445,0.0711418433484141,0,0.399158742865633,0,0.211673582723883,0,0,0,0,0,0,0.1605880751037,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0.16480387422676,0,0,0,0,0,0,0,0.0898683511473268,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0.174919999992391,0,0.341380344856499,0.254253650292766,0,0,0,0.173624994933292,0,0.120596438625408,0,0,0,0,0,0,0.0769502585037971,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0.167821586975843,0,0,0.210998064528027,0.163232808159148,0.141353071433941,0,0,0,0,0,0,0.208843899010911,0,0,0,0,0,0.728341138602278,0,1.20990716048664,0,0,9.77102226194202,0.518440956986236,0.664653872707185,0.330991955875499,0,1.19472429772959,0.284609546029793,0,0,0,0.0870592065804026,0,0.171986032471617,0,0,0,0,0.441280633457501,0,0,0,0.0633107959558787,0.195551382734803,0.0801588202515337,0,0,0.144090417154106,0,0,0.288109595976299,0.124252535565433,0.471388069233591,0.135904206073614,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157566364614447,0,0.0674035438541849,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.0788057072991982,0,0.739202355635845,0,0.191915197319445,0.714695326373367,0,0,0,0,0.326587360109409,0,0.164185041498678,0,0,0,0,0,0,0,0.704815022316672,0,0,0,0,0,0,0,0,0,0,0.327872630709804,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0,0.15543720058278,0,0,0,0,0,0.265841714557995,1.04349012362347,0,0.380805212168795,0.406870733204662,0,0.107410557042488,0,0.398095888698616,0.400027764663154,0,0,0,0,0.643324774124777,0,0,0.231522474323834,0,0,0.617602894321944,0,0,0,0,0.256241518587947,0.345430341731199,0.303859956177382,0,0,0.132864840313363,0.327130788511688,0,0,0.211312123358627,0,0,0,0,0.184105950251841,0.279759015438889,0,0.127894371303652,0.107824811396682,0,0,0.169732529954025,0,0.247871528518004,0,0,0,0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| |||
|short_description=p@chr1:228290095..228290116,- | |||
}} |
Revision as of 04:02, 12 September 2013
Short description: | p@chr1:228290095..228290116, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:228290095..228290116, - |
Coexpression cluster: | C19_embryonic_testis_cord_chronic_CD14_NK_mesothelioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
capillary endothelial cell | 6.76e-34 | 3 |
endothelial cell | 4.95e-24 | 36 |
endothelial cell of vascular tree | 3.59e-22 | 24 |
blood vessel endothelial cell | 5.58e-22 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.58e-22 | 18 |
meso-epithelial cell | 5.13e-19 | 45 |
aortic endothelial cell | 1.80e-17 | 6 |
lining cell | 1.64e-14 | 58 |
barrier cell | 1.64e-14 | 58 |
smooth muscle cell of the umbilical artery | 6.03e-12 | 4 |
endothelial cell of artery | 7.57e-12 | 9 |
mesodermal cell | 1.27e-09 | 121 |
keratocyte | 5.41e-07 | 2 |
migratory cranial neural crest cell | 5.41e-07 | 2 |
endothelial cell of sinusoid | 7.20e-07 | 2 |
endothelial cell of hepatic sinusoid | 7.20e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
microcirculatory vessel | 6.76e-34 | 3 |
endothelium of capillary | 6.76e-34 | 3 |
capillary | 6.76e-34 | 3 |
blood vessel endothelium | 5.58e-22 | 18 |
endothelium | 5.58e-22 | 18 |
cardiovascular system endothelium | 5.58e-22 | 18 |
simple squamous epithelium | 6.25e-18 | 22 |
squamous epithelium | 9.67e-16 | 25 |
vessel | 4.97e-15 | 68 |
epithelial tube open at both ends | 3.80e-14 | 59 |
blood vessel | 3.80e-14 | 59 |
blood vasculature | 3.80e-14 | 59 |
vascular cord | 3.80e-14 | 59 |
vasculature | 6.19e-13 | 78 |
vascular system | 6.19e-13 | 78 |
umbilical artery | 6.03e-12 | 4 |
endothelial tube | 7.57e-12 | 9 |
arterial system endothelium | 7.57e-12 | 9 |
endothelium of artery | 7.57e-12 | 9 |
splanchnic layer of lateral plate mesoderm | 9.88e-10 | 83 |
cardiovascular system | 7.15e-09 | 109 |
circulatory system | 1.34e-08 | 112 |
epithelial tube | 3.46e-08 | 117 |
head connective tissue | 5.41e-07 | 2 |
substantia propria of cornea | 5.41e-07 | 2 |
hepatic sinusoid | 7.20e-07 | 2 |
abdomen blood vessel | 7.20e-07 | 2 |
sinusoid | 7.20e-07 | 2 |
abdominal segment blood vessel | 7.20e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.