FFCP PHASE1:Hg19::chr20:44640553..44640577,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4318|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=7176|TSSclassifier=S|UniProt=F5H3W7|association_with_transcript=0bp_to_ENST00000545925_5end|description=CAGE_peak_9_at_MMP9_5end|id=chr20:44640553..44640577,+|ontology_enrichment_celltype=CL:0002009!5.71e-31!65;CL:0000557!6.39e-28!71;CL:0002194!3.32e-26!63;CL:0000576!3.32e-26!63;CL:0000040!3.32e-26!63;CL:0000559!3.32e-26!63;CL:0000766!9.01e-26!76;CL:0000763!6.44e-25!112;CL:0000049!6.44e-25!112;CL:0000990!2.15e-23!8;CL:0000839!4.05e-23!70;CL:0000453!2.97e-22!5;CL:0000451!5.69e-19!10;CL:0000738!1.18e-18!140;CL:0000235!1.33e-16!10;CL:0002032!7.36e-15!165;CL:0000837!7.36e-15!165;CL:0000037!5.39e-14!172;CL:0000566!5.39e-14!172;CL:0002031!9.62e-14!124;CL:0000988!7.07e-13!182;CL:0002057!7.62e-13!42;CL:0000840!1.98e-12!5;CL:0001029!1.98e-12!5;CL:0000860!8.05e-12!45;CL:0002087!1.21e-11!119;CL:0001014!1.68e-10!2;CL:0001016!1.68e-10!2;CL:0002621!8.55e-07!3|ontology_enrichment_celltype_v019=CL:0000235;3.93e-98;6!CL:0000473;5.73e-27;39!CL:0000234;5.73e-27;39!CL:0000766;1.11e-11;69!CL:0001014;7.97e-10;2!CL:0001016;7.97e-10;2!CL:0000771;1.38e-09;2!CL:0000094;3.27e-09;8!CL:0000763;1.04e-07;100!CL:0000081;6.16e-07;11!CL:0000775;8.38e-07;3|ontology_enrichment_celltype_v019_2=CL:0000235,4.31e-98,6;CL:0000473,4.65e-27,48;CL:0000234,4.65e-27,48;CL:0000766,1.82e-26,72;CL:0002009,8.09e-26,61;CL:0000557,1.75e-23,67;CL:0002194,1.55e-21,59;CL:0000576,1.55e-21,59;CL:0000040,1.55e-21,59;CL:0000559,1.55e-21,59;CL:0000763,5.64e-21,108;CL:0000049,5.64e-21,108;CL:0000839,3.17e-19,66;CL:0000738,1.60e-16,136;CL:0002032,7.73e-14,161;CL:0000837,7.73e-14,161;CL:0000037,3.15e-13,168;CL:0002031,7.17e-13,120;CL:0000988,1.64e-12,177;CL:0002087,8.11e-11,115;CL:0001014,7.98e-10,2;CL:0001016,7.98e-10,2;CL:0000771,1.22e-09,2;CL:0000094,2.66e-09,8;CL:0000081,5.31e-07,11;CL:0000775,6.88e-07,3|ontology_enrichment_development_v019=CL:0000049;1.31e-07;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!3.39e-24!80;UBERON:0001474!3.83e-22!86;UBERON:0002390!1.43e-19!102;UBERON:0003061!1.43e-19!102;UBERON:0004765!4.50e-18!101;UBERON:0001434!4.50e-18!101;UBERON:0002193!2.48e-17!112;UBERON:0002405!9.78e-17!115;UBERON:0002204!6.39e-11!167;UBERON:0003081!5.57e-08!216;UBERON:0001949!8.55e-07!3|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.17e-20,76;UBERON:0001474,4.09e-19,82;UBERON:0004765,2.27e-17,90;UBERON:0002405,8.60e-17,93;UBERON:0002390,6.61e-16,98;UBERON:0003061,6.61e-16,98;UBERON:0001434,1.41e-15,100;UBERON:0002193,2.24e-14,108;UBERON:0002204,4.99e-09,167;UBERON:0003081,2.86e-07,203|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32389366601898,0,0,0,0,0.697287110717054,0.411167888021826,0,0.28769239232215,0,0,0,0.645484683583826,0,0.376484679085209,0.545812300115692,0,0.612167784741805,0.962787081228281,1.27867425159808,0,0,0,0.290209238628584,1.13477044938228,1.24564449799115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324547393654683,0,0.664789802594326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.545492241181669,0,0,0,0.116193942869518,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23108503043699,1.17002132569619,1.78357394746474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,1.50677127429638,6.32501818449095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65766205374414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0.0852266274161009,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,8.77398177050852,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0.398594520940089,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4318 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=7176 | |||
|TSSclassifier=S | |||
|UniProt=F5H3W7 | |||
|association_with_transcript=0bp_to_ENST00000545925_5end | |||
|description=CAGE_peak_9_at_MMP9_5end | |||
|id=chr20:44640553..44640577,+ | |||
|ontology_enrichment_celltype=CL:0002009!5.71e-31!65;CL:0000557!6.39e-28!71;CL:0002194!3.32e-26!63;CL:0000576!3.32e-26!63;CL:0000040!3.32e-26!63;CL:0000559!3.32e-26!63;CL:0000766!9.01e-26!76;CL:0000763!6.44e-25!112;CL:0000049!6.44e-25!112;CL:0000990!2.15e-23!8;CL:0000839!4.05e-23!70;CL:0000453!2.97e-22!5;CL:0000451!5.69e-19!10;CL:0000738!1.18e-18!140;CL:0000235!1.33e-16!10;CL:0002032!7.36e-15!165;CL:0000837!7.36e-15!165;CL:0000037!5.39e-14!172;CL:0000566!5.39e-14!172;CL:0002031!9.62e-14!124;CL:0000988!7.07e-13!182;CL:0002057!7.62e-13!42;CL:0000840!1.98e-12!5;CL:0001029!1.98e-12!5;CL:0000860!8.05e-12!45;CL:0002087!1.21e-11!119;CL:0001014!1.68e-10!2;CL:0001016!1.68e-10!2;CL:0002621!8.55e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000235;3.93e-98;6!CL:0000473;5.73e-27;39!CL:0000234;5.73e-27;39!CL:0000766;1.11e-11;69!CL:0001014;7.97e-10;2!CL:0001016;7.97e-10;2!CL:0000771;1.38e-09;2!CL:0000094;3.27e-09;8!CL:0000763;1.04e-07;100!CL:0000081;6.16e-07;11!CL:0000775;8.38e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000235,4.31e-98,6;CL:0000473,4.65e-27,48;CL:0000234,4.65e-27,48;CL:0000766,1.82e-26,72;CL:0002009,8.09e-26,61;CL:0000557,1.75e-23,67;CL:0002194,1.55e-21,59;CL:0000576,1.55e-21,59;CL:0000040,1.55e-21,59;CL:0000559,1.55e-21,59;CL:0000763,5.64e-21,108;CL:0000049,5.64e-21,108;CL:0000839,3.17e-19,66;CL:0000738,1.60e-16,136;CL:0002032,7.73e-14,161;CL:0000837,7.73e-14,161;CL:0000037,3.15e-13,168;CL:0002031,7.17e-13,120;CL:0000988,1.64e-12,177;CL:0002087,8.11e-11,115;CL:0001014,7.98e-10,2;CL:0001016,7.98e-10,2;CL:0000771,1.22e-09,2;CL:0000094,2.66e-09,8;CL:0000081,5.31e-07,11;CL:0000775,6.88e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000049;1.31e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!3.39e-24!80;UBERON:0001474!3.83e-22!86;UBERON:0002390!1.43e-19!102;UBERON:0003061!1.43e-19!102;UBERON:0004765!4.50e-18!101;UBERON:0001434!4.50e-18!101;UBERON:0002193!2.48e-17!112;UBERON:0002405!9.78e-17!115;UBERON:0002204!6.39e-11!167;UBERON:0003081!5.57e-08!216;UBERON:0001949!8.55e-07!3 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.17e-20,76;UBERON:0001474,4.09e-19,82;UBERON:0004765,2.27e-17,90;UBERON:0002405,8.60e-17,93;UBERON:0002390,6.61e-16,98;UBERON:0003061,6.61e-16,98;UBERON:0001434,1.41e-15,100;UBERON:0002193,2.24e-14,108;UBERON:0002204,4.99e-09,167;UBERON:0003081,2.86e-07,203 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32389366601898,0,0,0,0,0.697287110717054,0.411167888021826,0,0.28769239232215,0,0,0,0.645484683583826,0,0.376484679085209,0.545812300115692,0,0.612167784741805,0.962787081228281,1.27867425159808,0,0,0,0.290209238628584,1.13477044938228,1.24564449799115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324547393654683,0,0.664789802594326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.545492241181669,0,0,0,0.116193942869518,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23108503043699,1.17002132569619,1.78357394746474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,1.50677127429638,6.32501818449095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65766205374414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0.0852266274161009,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,8.77398177050852,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0.398594520940089,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275684698604535,0,0.378893491091197,0.267964130156178,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p9@MMP9 | |||
}} |
Revision as of 08:47, 12 September 2013
Short description: | p9@MMP9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_MMP9_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000545925_5end |
EntrezGene: | MMP9 |
HGNC: | 7176 |
UniProt: | F5H3W7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage | 4.31e-98 | 6 |
defensive cell | 4.65e-27 | 48 |
phagocyte | 4.65e-27 | 48 |
myeloid leukocyte | 1.82e-26 | 72 |
macrophage dendritic cell progenitor | 8.09e-26 | 61 |
granulocyte monocyte progenitor cell | 1.75e-23 | 67 |
monopoietic cell | 1.55e-21 | 59 |
monocyte | 1.55e-21 | 59 |
monoblast | 1.55e-21 | 59 |
promonocyte | 1.55e-21 | 59 |
myeloid cell | 5.64e-21 | 108 |
common myeloid progenitor | 5.64e-21 | 108 |
myeloid lineage restricted progenitor cell | 3.17e-19 | 66 |
leukocyte | 1.60e-16 | 136 |
hematopoietic oligopotent progenitor cell | 7.73e-14 | 161 |
hematopoietic multipotent progenitor cell | 7.73e-14 | 161 |
hematopoietic stem cell | 3.15e-13 | 168 |
hematopoietic lineage restricted progenitor cell | 7.17e-13 | 120 |
hematopoietic cell | 1.64e-12 | 177 |
nongranular leukocyte | 8.11e-11 | 115 |
CD1a-positive Langerhans cell | 7.98e-10 | 2 |
immature CD1a-positive Langerhans cell | 7.98e-10 | 2 |
eosinophil | 1.22e-09 | 2 |
granulocyte | 2.66e-09 | 8 |
blood cell | 5.31e-07 | 11 |
neutrophil | 6.88e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.17e-20 | 76 |
bone element | 4.09e-19 | 82 |
skeletal element | 2.27e-17 | 90 |
immune system | 8.60e-17 | 93 |
hematopoietic system | 6.61e-16 | 98 |
blood island | 6.61e-16 | 98 |
skeletal system | 1.41e-15 | 100 |
hemolymphoid system | 2.24e-14 | 108 |
musculoskeletal system | 4.99e-09 | 167 |
lateral plate mesoderm | 2.86e-07 | 203 |
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