FFCP PHASE1:Hg19::chr2:130564740..130564772,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=100131048|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=|TSSclassifier=N|UniProt=|association_with_transcript=-384bp_to_AK125976_5end|coexpression_cluster_id=C42|description=CAGE_peak_1_at_LOC100131048_5end|id=chr2:130564740..130564772,-|ontology_enrichment_celltype=CL:0000039!6.20e-38!7;CL:0000586!6.20e-38!7;CL:0000540!4.50e-08!6;CL:0000031!4.50e-08!6;CL:0000404!4.50e-08!6|ontology_enrichment_celltype_v019=CL:0000039;1.31e-63;7!CL:0000586;1.31e-63;7|ontology_enrichment_celltype_v019_2=CL:0000039,1.31e-63,7;CL:0000586,1.31e-63,7|ontology_enrichment_development_v019=UBERON:0009117;6.56e-45;10!UBERON:0005564;6.56e-45;10|ontology_enrichment_disease=DOID:3095!5.09e-23!22;DOID:2994!5.09e-23!22;DOID:6193!9.61e-12!1;DOID:2355!1.07e-11!1|ontology_enrichment_disease_v019=DOID:3095;4.90e-21;22!DOID:2994;4.90e-21;22!DOID:5409;8.81e-14;4!DOID:1325;1.89e-08;7!DOID:3904;1.89e-08;7!DOID:3905;7.48e-07;9|ontology_enrichment_disease_v019_2=DOID:3095,4.90e-21,22;DOID:2994,4.90e-21,22;DOID:5409,8.82e-14,4;DOID:1325,1.89e-08,7;DOID:3904,1.89e-08,7;DOID:305,2.62e-08,106;DOID:3905,7.48e-07,9|ontology_enrichment_uberon=UBERON:0000473!7.69e-22!8;UBERON:0003135!5.80e-16!11;UBERON:0000991!1.86e-08!21;UBERON:0009196!1.86e-08!21;UBERON:0009117!1.86e-08!21;UBERON:0005564!1.86e-08!21;UBERON:0004176!4.44e-08!22;UBERON:0003101!4.44e-08!22;UBERON:0000079!4.44e-08!22|ontology_enrichment_uberon_v019=UBERON:0000473;8.04e-56;8!UBERON:0003135;6.13e-41;11!UBERON:0000991;5.49e-22;21!UBERON:0003101;4.90e-21;22!UBERON:0000079;4.90e-21;22!UBERON:0002323;3.41e-10;45!UBERON:0000922;4.30e-09;49!UBERON:0003133;8.38e-08;44!UBERON:0002553;2.00e-07;52|ontology_enrichment_uberon_v019_2=UBERON:0000473,8.04e-56,8;UBERON:0003135,6.14e-41,11;UBERON:0000991,5.49e-22,21;UBERON:0009196,5.49e-22,21;UBERON:0009117,5.49e-22,21;UBERON:0005564,5.49e-22,21;UBERON:0004176,4.90e-21,22;UBERON:0003101,4.90e-21,22;UBERON:0000079,4.90e-21,22;UBERON:0002323,1.44e-10,46;UBERON:0003133,3.64e-10,48;UBERON:0004458,5.64e-10,49;UBERON:0003886,3.93e-09,54;UBERON:0005156,1.98e-08,59;UBERON:0000990,1.98e-08,59;UBERON:0002553,3.51e-08,61|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0.415440338029185,0,0,0,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314531883711793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,247.351919665322,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327796715891087,0,0.61193297845189,1.06886962106224,1.65410819162721,1.0028301571695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p1@LOC100131048}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=100131048 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=-384bp_to_AK125976_5end | |||
|coexpression_cluster_id=C42 | |||
|description=CAGE_peak_1_at_LOC100131048_5end | |||
|id=chr2:130564740..130564772,- | |||
|ontology_enrichment_celltype=CL:0000039!6.20e-38!7;CL:0000586!6.20e-38!7;CL:0000540!4.50e-08!6;CL:0000031!4.50e-08!6;CL:0000404!4.50e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000039;1.31e-63;7!CL:0000586;1.31e-63;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.31e-63,7;CL:0000586,1.31e-63,7 | |||
|ontology_enrichment_development_v019=UBERON:0009117;6.56e-45;10!UBERON:0005564;6.56e-45;10 | |||
|ontology_enrichment_disease=DOID:3095!5.09e-23!22;DOID:2994!5.09e-23!22;DOID:6193!9.61e-12!1;DOID:2355!1.07e-11!1 | |||
|ontology_enrichment_disease_v019=DOID:3095;4.90e-21;22!DOID:2994;4.90e-21;22!DOID:5409;8.81e-14;4!DOID:1325;1.89e-08;7!DOID:3904;1.89e-08;7!DOID:3905;7.48e-07;9 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,4.90e-21,22;DOID:2994,4.90e-21,22;DOID:5409,8.82e-14,4;DOID:1325,1.89e-08,7;DOID:3904,1.89e-08,7;DOID:305,2.62e-08,106;DOID:3905,7.48e-07,9 | |||
|ontology_enrichment_uberon=UBERON:0000473!7.69e-22!8;UBERON:0003135!5.80e-16!11;UBERON:0000991!1.86e-08!21;UBERON:0009196!1.86e-08!21;UBERON:0009117!1.86e-08!21;UBERON:0005564!1.86e-08!21;UBERON:0004176!4.44e-08!22;UBERON:0003101!4.44e-08!22;UBERON:0000079!4.44e-08!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;8.04e-56;8!UBERON:0003135;6.13e-41;11!UBERON:0000991;5.49e-22;21!UBERON:0003101;4.90e-21;22!UBERON:0000079;4.90e-21;22!UBERON:0002323;3.41e-10;45!UBERON:0000922;4.30e-09;49!UBERON:0003133;8.38e-08;44!UBERON:0002553;2.00e-07;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,8.04e-56,8;UBERON:0003135,6.14e-41,11;UBERON:0000991,5.49e-22,21;UBERON:0009196,5.49e-22,21;UBERON:0009117,5.49e-22,21;UBERON:0005564,5.49e-22,21;UBERON:0004176,4.90e-21,22;UBERON:0003101,4.90e-21,22;UBERON:0000079,4.90e-21,22;UBERON:0002323,1.44e-10,46;UBERON:0003133,3.64e-10,48;UBERON:0004458,5.64e-10,49;UBERON:0003886,3.93e-09,54;UBERON:0005156,1.98e-08,59;UBERON:0000990,1.98e-08,59;UBERON:0002553,3.51e-08,61 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0.415440338029185,0,0,0,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314531883711793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,247.351919665322,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327796715891087,0,0.61193297845189,1.06886962106224,1.65410819162721,1.0028301571695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@LOC100131048 | |||
}} |
Revision as of 13:27, 12 September 2013
Short description: | p1@LOC100131048 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_LOC100131048_5end |
Coexpression cluster: | C42_small_lung_maxillary_pharyngeal_Mesenchymal_Wilms_colon |
Association with transcript: | -384bp_to_AK125976_5end |
EntrezGene: | LOC100131048 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.31e-63 | 7 |
germ cell | 1.31e-63 | 7 |
Ontology term | p-value | n |
---|---|---|
testis | 8.04e-56 | 8 |
male reproductive organ | 6.14e-41 | 11 |
gonad | 5.49e-22 | 21 |
indifferent external genitalia | 5.49e-22 | 21 |
indifferent gonad | 5.49e-22 | 21 |
gonad primordium | 5.49e-22 | 21 |
external genitalia | 4.90e-21 | 22 |
male organism | 4.90e-21 | 22 |
male reproductive system | 4.90e-21 | 22 |
body cavity | 1.44e-10 | 46 |
reproductive organ | 3.64e-10 | 48 |
body cavity or lining | 5.64e-10 | 49 |
body cavity precursor | 3.93e-09 | 54 |
reproductive structure | 1.98e-08 | 59 |
reproductive system | 1.98e-08 | 59 |
anatomical cavity | 3.51e-08 | 61 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 4.90e-21 | 22 |
germ cell cancer | 4.90e-21 | 22 |
lung small cell carcinoma | 8.82e-14 | 4 |
bronchus cancer | 1.89e-08 | 7 |
bronchogenic carcinoma | 1.89e-08 | 7 |
carcinoma | 2.62e-08 | 106 |
lung carcinoma | 7.48e-07 | 9 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.