FFCP PHASE1:Hg19::chr5:112849517..112849538,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=64848|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=24721|TSSclassifier=W|UniProt=|association_with_transcript=107bp_to_uc003kqn.2,uc010jce.1,uc010jcf.1_5end|coexpression_cluster_id=C7|description=CAGE_peak_2_at_YTHDC2_5end|id=chr5:112849517..112849538,+|ontology_enrichment_celltype=CL:0002057!6.04e-30!42;CL:0000860!1.14e-28!45;CL:0000766!7.47e-28!76;CL:0000557!2.18e-24!71;CL:0002009!3.00e-24!65;CL:0002194!3.78e-23!63;CL:0000576!3.78e-23!63;CL:0000040!3.78e-23!63;CL:0000559!3.78e-23!63;CL:0000839!1.62e-22!70;CL:0000738!1.41e-17!140;CL:0000763!1.13e-16!112;CL:0000049!1.13e-16!112;CL:0002031!1.75e-12!124;CL:0002087!4.12e-12!119;CL:0000037!4.46e-11!172;CL:0000566!4.46e-11!172;CL:0000988!1.10e-10!182;CL:0002032!4.32e-10!165;CL:0000837!4.32e-10!165;CL:0000134!4.02e-08!358;CL:0002320!4.90e-07!365|ontology_enrichment_celltype_v019=CL:0000860;1.96e-64;33!CL:0002057;1.96e-64;33!CL:0000473;3.86e-44;39!CL:0000234;3.86e-44;39!CL:0000576;1.00e-42;48!CL:0000766;1.71e-31;69!CL:0000763;9.62e-14;100!CL:0000094;2.73e-13;8!CL:0002393;1.66e-12;6!CL:0002397;1.66e-12;6!CL:0000081;7.07e-12;11!CL:0002087;7.37e-11;104!CL:0000738;2.38e-09;136!CL:0000767;3.45e-07;3|ontology_enrichment_celltype_v019_2=CL:0000860,3.33e-79,42;CL:0002057,3.33e-79,42;CL:0000473,1.13e-67,48;CL:0000234,1.13e-67,48;CL:0000766,2.23e-63,72;CL:0002009,2.39e-52,61;CL:0002194,1.48e-51,59;CL:0000576,1.48e-51,59;CL:0000040,1.48e-51,59;CL:0000559,1.48e-51,59;CL:0000557,1.94e-51,67;CL:0000839,1.22e-49,66;CL:0000763,2.10e-39,108;CL:0000049,2.10e-39,108;CL:0000738,3.53e-37,136;CL:0002031,2.59e-27,120;CL:0000037,4.42e-27,168;CL:0000988,4.38e-26,177;CL:0002087,4.99e-26,115;CL:0002032,2.92e-25,161;CL:0000837,2.92e-25,161;CL:0000134,7.28e-14,354;CL:0000094,2.78e-13,8;CL:0002320,3.01e-13,361;CL:0000081,6.13e-12,11;CL:0000219,4.29e-11,386;CL:0002393,9.88e-11,9;CL:0002397,9.88e-11,9;CL:0000034,8.33e-10,441;CL:0000048,1.42e-09,427;CL:0000723,3.38e-09,433;CL:0000767,3.44e-07,3|ontology_enrichment_development_v019=CL:0002057;2.43e-56;42!CL:0000049;9.42e-12;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!1.87e-21!80;UBERON:0001474!6.93e-20!86;UBERON:0002390!5.10e-19!102;UBERON:0003061!5.10e-19!102;UBERON:0002193!3.81e-18!112;UBERON:0002405!2.71e-17!115;UBERON:0004765!6.48e-15!101;UBERON:0001434!6.48e-15!101;UBERON:0003081!3.47e-10!216;UBERON:0002204!3.43e-08!167;UBERON:0002384!3.36e-07!375|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.72e-48,76;UBERON:0001474,1.15e-43,82;UBERON:0004765,2.09e-40,90;UBERON:0002405,9.79e-39,93;UBERON:0002390,7.37e-38,98;UBERON:0003061,7.37e-38,98;UBERON:0001434,5.06e-35,100;UBERON:0002193,1.12e-34,108;UBERON:0003081,4.55e-21,203;UBERON:0002204,9.62e-18,167;UBERON:0002384,5.02e-13,371;UBERON:0000926,1.46e-10,315;UBERON:0004120,1.46e-10,315;UBERON:0006603,1.46e-10,315|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0.602694528023977,0.730310090387373,0,0,0,0,0,0.273748850145768,0.502170558379211,0.0764134057479513,0.0821005894499457,0.0787107813136792,3.54027849164014,2.30297638858328,2.78669021968937,0,0,0,0,0,0,9.41792194504192,4.21143339687298,5.859293509328,0.223915474239924,0,0,7.26991193897824,7.935394817465,12.8569552429543,11.6214518452842,11.5127008646111,16.7241440283356,37.9753957865239,27.4091955986138,48.9518215869371,16.5477926753577,17.4280864567633,10.8341189275473,10.1650863353007,8.46009065179322,14.3823030044854,19.2832852193669,14.4418062184242,26.8521592835597,33.644832619045,20.3452930774064,38.7864522984752,19.4440189881151,23.8301794370279,29.272645702792,51.0034790471189,29.7245263499515,49.5190565927666,16.345786571101,17.6773265274031,24.684066220389,1.26753171787165,4.889898899196,1.04829322754188,1.12328631146495,4.35512989240368,1.12507910687956,0.855038231223746,1.9891667719909,0.547992461293902,0,0,0,0,0,0,0,0,0.569212969109448,0,0.382273228125229,1.32171328579026,2.80254281490768,0.263384084775077,0.196709770113833,0.393010762749165,0.411202997999018,0,0.32592226663359,0.473447805734733,0,0,0.294605907474837,0.221533894583621,0.270803863765016,0,0,0,0,0,0.14828656316206,0.535081656179426,1.04535523804977,0,0,0.34362744548263,0.253019692019503,0,0,0,0.150575119077773,0.127986611154418,0,0.236777252044017,0,1.61285394579786,0.267440195783507,0.289648807765598,4.87613732627923,0,0,0,0,0,0,0.973269740605272,0.0945348171640679,0.221729397462564,0.087834785693126,0.0654895377488563,0,0,0.649094787309367,0.870648686496336,0.398873881556595,0.715471872916026,1.14398982156026,2.22874500797739,0.198762407366705,1.72046919021225,0,0,0,0.275118041940067,0,0.258416759169329,0.35576626268671,0.33472061276467,0,0.760272105718513,1.22031028774085,0,0.81014194788176,0.17859945656816,0.44905874525234,0.112611480483322,0,0,0.183201743930407,35.5807127077371,7.75560528296651,0,0,0.12663051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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=64848 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24721 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=107bp_to_uc003kqn.2,uc010jce.1,uc010jcf.1_5end | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_2_at_YTHDC2_5end | |||
|id=chr5:112849517..112849538,+ | |||
|ontology_enrichment_celltype=CL:0002057!6.04e-30!42;CL:0000860!1.14e-28!45;CL:0000766!7.47e-28!76;CL:0000557!2.18e-24!71;CL:0002009!3.00e-24!65;CL:0002194!3.78e-23!63;CL:0000576!3.78e-23!63;CL:0000040!3.78e-23!63;CL:0000559!3.78e-23!63;CL:0000839!1.62e-22!70;CL:0000738!1.41e-17!140;CL:0000763!1.13e-16!112;CL:0000049!1.13e-16!112;CL:0002031!1.75e-12!124;CL:0002087!4.12e-12!119;CL:0000037!4.46e-11!172;CL:0000566!4.46e-11!172;CL:0000988!1.10e-10!182;CL:0002032!4.32e-10!165;CL:0000837!4.32e-10!165;CL:0000134!4.02e-08!358;CL:0002320!4.90e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.96e-64;33!CL:0002057;1.96e-64;33!CL:0000473;3.86e-44;39!CL:0000234;3.86e-44;39!CL:0000576;1.00e-42;48!CL:0000766;1.71e-31;69!CL:0000763;9.62e-14;100!CL:0000094;2.73e-13;8!CL:0002393;1.66e-12;6!CL:0002397;1.66e-12;6!CL:0000081;7.07e-12;11!CL:0002087;7.37e-11;104!CL:0000738;2.38e-09;136!CL:0000767;3.45e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.33e-79,42;CL:0002057,3.33e-79,42;CL:0000473,1.13e-67,48;CL:0000234,1.13e-67,48;CL:0000766,2.23e-63,72;CL:0002009,2.39e-52,61;CL:0002194,1.48e-51,59;CL:0000576,1.48e-51,59;CL:0000040,1.48e-51,59;CL:0000559,1.48e-51,59;CL:0000557,1.94e-51,67;CL:0000839,1.22e-49,66;CL:0000763,2.10e-39,108;CL:0000049,2.10e-39,108;CL:0000738,3.53e-37,136;CL:0002031,2.59e-27,120;CL:0000037,4.42e-27,168;CL:0000988,4.38e-26,177;CL:0002087,4.99e-26,115;CL:0002032,2.92e-25,161;CL:0000837,2.92e-25,161;CL:0000134,7.28e-14,354;CL:0000094,2.78e-13,8;CL:0002320,3.01e-13,361;CL:0000081,6.13e-12,11;CL:0000219,4.29e-11,386;CL:0002393,9.88e-11,9;CL:0002397,9.88e-11,9;CL:0000034,8.33e-10,441;CL:0000048,1.42e-09,427;CL:0000723,3.38e-09,433;CL:0000767,3.44e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;2.43e-56;42!CL:0000049;9.42e-12;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.87e-21!80;UBERON:0001474!6.93e-20!86;UBERON:0002390!5.10e-19!102;UBERON:0003061!5.10e-19!102;UBERON:0002193!3.81e-18!112;UBERON:0002405!2.71e-17!115;UBERON:0004765!6.48e-15!101;UBERON:0001434!6.48e-15!101;UBERON:0003081!3.47e-10!216;UBERON:0002204!3.43e-08!167;UBERON:0002384!3.36e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.72e-48,76;UBERON:0001474,1.15e-43,82;UBERON:0004765,2.09e-40,90;UBERON:0002405,9.79e-39,93;UBERON:0002390,7.37e-38,98;UBERON:0003061,7.37e-38,98;UBERON:0001434,5.06e-35,100;UBERON:0002193,1.12e-34,108;UBERON:0003081,4.55e-21,203;UBERON:0002204,9.62e-18,167;UBERON:0002384,5.02e-13,371;UBERON:0000926,1.46e-10,315;UBERON:0004120,1.46e-10,315;UBERON:0006603,1.46e-10,315 | |||
|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0.602694528023977,0.730310090387373,0,0,0,0,0,0.273748850145768,0.502170558379211,0.0764134057479513,0.0821005894499457,0.0787107813136792,3.54027849164014,2.30297638858328,2.78669021968937,0,0,0,0,0,0,9.41792194504192,4.21143339687298,5.859293509328,0.223915474239924,0,0,7.26991193897824,7.935394817465,12.8569552429543,11.6214518452842,11.5127008646111,16.7241440283356,37.9753957865239,27.4091955986138,48.9518215869371,16.5477926753577,17.4280864567633,10.8341189275473,10.1650863353007,8.46009065179322,14.3823030044854,19.2832852193669,14.4418062184242,26.8521592835597,33.644832619045,20.3452930774064,38.7864522984752,19.4440189881151,23.8301794370279,29.272645702792,51.0034790471189,29.7245263499515,49.5190565927666,16.345786571101,17.6773265274031,24.684066220389,1.26753171787165,4.889898899196,1.04829322754188,1.12328631146495,4.35512989240368,1.12507910687956,0.855038231223746,1.9891667719909,0.547992461293902,0,0,0,0,0,0,0,0,0.569212969109448,0,0.382273228125229,1.32171328579026,2.80254281490768,0.263384084775077,0.196709770113833,0.393010762749165,0.411202997999018,0,0.32592226663359,0.473447805734733,0,0,0.294605907474837,0.221533894583621,0.270803863765016,0,0,0,0,0,0.14828656316206,0.535081656179426,1.04535523804977,0,0,0.34362744548263,0.253019692019503,0,0,0,0.150575119077773,0.127986611154418,0,0.236777252044017,0,1.61285394579786,0.267440195783507,0.289648807765598,4.87613732627923,0,0,0,0,0,0,0.973269740605272,0.0945348171640679,0.221729397462564,0.087834785693126,0.0654895377488563,0,0,0.649094787309367,0.870648686496336,0.398873881556595,0.715471872916026,1.14398982156026,2.22874500797739,0.198762407366705,1.72046919021225,0,0,0,0.275118041940067,0,0.258416759169329,0.35576626268671,0.33472061276467,0,0.760272105718513,1.22031028774085,0,0.81014194788176,0.17859945656816,0.44905874525234,0.112611480483322,0,0,0.183201743930407,35.5807127077371,7.75560528296651,0,0,0.12663051166458,0,0.286836620748814,0,1.68203280042692,1.06748995729705,0,0,0.404132016209064,0.490385709340376,0,0,0,0,0.570471821544449,0.149448680551801,0.23486899728753,0.161872944368132,0.280901613404497,0.408308342509787,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0.453728732640084,0.89694817844431,0.427114777637135,0.423863802319124,1.20036438433761,0.309157587715317,0.515281080091258,0.18611685633159,0.843881661206331,0.292311015483596,1.26216887122057,0.0920498986422993,0.161646056818812,0.710019185033229,0.201504196455281,0,1.93260853163297,0.818238361772504,0.286804595389004,0,0.132529768321485,0,0.207322110030741,0,0,0,0,0,0,0,0.236613600079688,0.168584690078102,0.241011029883482,0,0.217879444092406,0.237270619111097,0.134831308160164,0.392442930250692,0.38474715694639,0,0,0,0,1.26755034821831,0.982827216677626,0,0,0.122988438543114,0.171567810298526,0,0,0,0,0,0,0,0.34779121492523,0.234817388471643,0.433099343283221,0,1.14152491340759,0,0,0.246217006087397,0.468008530278475,0.148631162288728,0,1.00789276919316,0.141775097242386,0.268675568108545,0.290633938513962,0.383382679165211,1.97065295158377,0,0.621984346622316,1.00883967391873,0.50496973370552,0.063497894292169,0,0,0,0,0,0,0.224262168690721,0.43596006883328,0.07333828582095,0.129271715757778,0,0.845302752556,0,0,0,0,0,0.142977993658148,0,0,0.325736184293735,0.355391948742546,0,0,0,0,0,0.502257091432126,0,0.239624855491583,0,0,0.579125226670317,0.61642896765115,0.537182889719687,0,1.97030760201927,0.431255149719035,1.66845947163673,0.76228387266739,0,0,0,0.637938751653163,8.23907726341901,0,16.5766205374414,0,0,0,0.415941723061614,0.178428988797162,0.315404830067869,0.117141414992713,0,0,0,0.664225598535437,0.184369168541703,0,0,0,0.620304078368662,0.862856803274467,1.06727557803444,0.303127571446259,1.66435439510497,0,0.248107807818777,0,0,0,0.511707249066704,0,0,0.154209693802656,0.177561725313127,0.0821271560138091,1.03850885836724,0.348631135379878,0.483437798366489,0.200506470303285,0,0.229628896329213,0.182091168006717,0,0,0.15403067420883,0,1.46139224653261,0.211103257785751,0,0.170093705276516,0.431831832204279,1.54227252690289,0,0,0.254876273045038,0,0.223874754722178,0,0,0,0,0,0.103041011647722,0.27470839445503,0.082509499920588,0,0,0,0.096670718292122,0,0.15350367472613,0.137836572484531,0,0,0,0.0890320356467374,0,0.576570202095319,3.31793052485919,0.10115778085555,0,0,0.6970372701606,0,0,0.869932992075073,0.18532421910392,0.715624433709956,0,0,0,0.255897791311334,0,0,0,0.179872457583315,0,0.117812402345686,0.808729926293264,0,0,0,0.243713489631284,0,0.272999822815972,0,0,0,0,0,0,0.655894752046633,0,0,0,0.143411352204052,0,0.35667105148125,0,0.211107635297664,0,0,0,0,0,0,0.188287601553558,0.86101074534246,0,0,0.229723400206959,0,0,0,0.238231775457789,0,0,0,0.79312517629427,0,0.962479855263359,0.245040215981032,0,0,0,0,0.199579371432817,0,0,0,0,0.228234679033192,0,0,0,0,0.201799707191048,0,0,0,0,0.166849141711909,0,0,0,0.270455678475983,0.33307196799782,0,0,0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| |||
|short_description=p2@YTHDC2 | |||
}} |
Revision as of 12:42, 13 September 2013
Short description: | p2@YTHDC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_YTHDC2_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 107bp_to_uc003kqn.2, uc010jce.1, uc010jcf.1_5end |
EntrezGene: | YTHDC2 |
HGNC: | 24721 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.72e-48 | 76 |
bone element | 1.15e-43 | 82 |
skeletal element | 2.09e-40 | 90 |
immune system | 9.79e-39 | 93 |
hematopoietic system | 7.37e-38 | 98 |
blood island | 7.37e-38 | 98 |
skeletal system | 5.06e-35 | 100 |
hemolymphoid system | 1.12e-34 | 108 |
lateral plate mesoderm | 4.55e-21 | 203 |
musculoskeletal system | 9.62e-18 | 167 |
connective tissue | 5.02e-13 | 371 |
mesoderm | 1.46e-10 | 315 |
mesoderm-derived structure | 1.46e-10 | 315 |
presumptive mesoderm | 1.46e-10 | 315 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.