FFCP PHASE1:Mm9::chr1:134195183..134195208,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=213417|HGNC=|MCL_coexpression_id=1176|UniProt=Q91XA8|association_with_transcript=0bp_to_ENSMUST00000046071,NM_144810,uc007con.1_5end|description=CAGE_peak_1_at_Klhdc8a_5end|id=chr1:134195183..134195208,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!2.72e-11!71;UBERON:0003075!2.72e-11!71;UBERON:0007284!2.72e-11!71;UBERON:0004121!4.02e-10!102;UBERON:0000924!4.02e-10!102;UBERON:0006601!4.02e-10!102;UBERON:0000033!3.45e-09!63;UBERON:0000475!3.19e-08!200;UBERON:0000062!1.01e-07!269;UBERON:0000955!5.69e-07!50;UBERON:0006238!5.69e-07!50;UBERON:0001049!6.88e-07!52;UBERON:0005068!6.88e-07!52;UBERON:0006241!6.88e-07!52;UBERON:0007135!6.88e-07!52|ontology_enrichment_uberon_v019_2=UBERON:0010314,8.57e-10,92;UBERON:0004121,1.74e-07,95;UBERON:0000924,1.74e-07,95;UBERON:0006601,1.74e-07,95;UBERON:0002346,3.22e-07,64;UBERON:0003075,3.22e-07,64;UBERON:0007284,3.22e-07,64;UBERON:0002369,5.06e-07,7;UBERON:0006858,5.06e-07,7;UBERON:0000073,7.71e-07,54;UBERON:0001017,9.78e-07,73|phase1_expression=0,2.09385244583617,4.09499315450582,0,0,2.68606835059024,2.80335168714631,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53077922271926,0.198581902401771,0.261199789138935,0.799962113967033,1.60586496747019,5.7423196411502,3.87685796543167,2.37018355954478,1.71021077510736,1.76421090831952,2.43903561720835,0,0,0,0,0.332469290716985,0.408338712524738,0,0,0,0,0,0,0.125896817975577,0.608261587317087,0.183546752161682,0.782391344348039,48.1835595600787,69.860206109562,61.4398481074736,12.4587915246573,27.3129872293446,0,0,0,1.28629718017973,1.14613375975503,1.54701627683233,7.08107613008592,7.40587370980846,1.90149421051854,7.45457970552091,1.77858959222228,0,0,0,4.79360176829448,8.06858441175265,0.518448061542388,0.405017814995072,0.841299845405528,3.42781181284564,2.65042249141936,0.489963196859816,0.383381884072945,0.919218786610021,7.70811166995721,6.89511625660014,8.1411462625809,3.95658863190582,5.21479568533735,2.6045668527838,8.09630697104005,5.6276261003168,6.41752640662602,3.83017161115768,2.42031857358475,1.67759501242771,0.151452386666368,0.151143120213571,0.289864488701678,0,0,3.77792234146472,1.29955283489534,1.34408066129201,1.82577746171277,7.49893419343454,7.01422212427746,4.24007489412408,0.563373679106722,7.69958864485907,12.7402619853323,7.11066703153331,15.154372870785,13.1747130047051,14.6602089054287,0.45673551887624,0,122.167880450351,14.3992821215893,38.3626502673298,48.8904854182844,51.5471430689969,39.3922168904611,82.6886170949265,1.73036477414062,0,0,0,0,0,0,3.80615036115011,8.58731497935166,1.53274233125155,0.11981512450592,0,0,6.5907881338122,3.66000482254901,1.88481528169297,3.30266208365325,3.06858548796397,8.51930982694196,5.353961681236,0.101839363850316,0.124406970610093,0,2.94618598241064,0.520481771850815,3.67843367093557,3.06105620669094,4.21973489940002,7.34794190834341,7.30248205623644,6.09061209638237,8.01980449290949,0,0,0,0.219195732427575,0,0,0,0,0,0,0,0,0.938104239924385,0.540186184383045,0.23674473558521,0,0.308534225774757,0.465067889500816,0.268273401399619,0.350296027101508,1.48103864922132,9.35754545250843,8.83650024049827,10.3801991071986,11.4166059951346,7.38135303182045,2.10289948564127,3.2929475961371,0.330418782983798,1.05780226665418,0.213288250535234,0.232236671860439,0,0,0.889512175379481,0.951128130562796,0.474529061544512,1.31759163779209,1.00534083520108,0.596869416123452,1.16978452271472,0.898819408654221,0.864552199498777,1.1948476395262,0.758671603812327,1.14248512609729,2.25415471346161,1.01825663922657,1.16371492300575,2.80543279561274,3.16182685621286,7.0852871030209,9.41992367048249,7.52722699922983,0.889357881261447,0,0,0,0.202860121388503,0.241177159752417,0.50925170356284,1.15078454980324,0.486405680325106,2.47105271869273,1.43768206527355,3.72140947668503,6.86482880852033,3.28352541331245,2.51156378930677,5.30687873499704,2.77129785249907,0.37898282354097,0.325929952884052,0.169745085775188,0,1.34005005953453,2.61848004974615,11.9031525193257,2.52216230569906,5.97954662051692,2.71073106717728,1.96635977658886,3.62638461918381,4.19482269886384,0,0,0,0,10.4357883492065,6.44664276257117,10.6557714494839,0.252470927204373,0,0,0.215423397732799,0,0,0,0,0,0,3.53453448063988,0.283880170416537,0.178065603667255,0.325773918707152,0,9.2921596837974,0.242780636154981,0.302323556964751,2.07465587731488,4.72483028609236,4.30409207121498,2.06742634534577,2.18120237686503,1.78248689192361,4.42451461110142,11.5960469432499,10.3135543248187,0,0.540183282093931,0.258717367565509,1.07168517515796,0.177340233642274,0.713475270408282,0.164549020602121,0.913394847343798,0.704015124191131,1.27099242518292,0.220528398054962,0.8244312647074,1.13025098687134,0.542816324353403,1.3130957840345,0.656563598980245,0.874442509889552,4.82105785227325,0.170870880797853,0.206386867963223,0,0.376736914009382,0.410082683163076,0.228778173206523,0.169978429993855,0,0,1.9093412360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| ||
|EntrezGene=213417 | |||
|HGNC= | |||
|MCL_coexpression_id=1176 | |||
|UniProt=Q91XA8 | |||
|association_with_transcript=0bp_to_ENSMUST00000046071,NM_144810,uc007con.1_5end | |||
|description=CAGE_peak_1_at_Klhdc8a_5end | |||
|id=chr1:134195183..134195208,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!2.72e-11!71;UBERON:0003075!2.72e-11!71;UBERON:0007284!2.72e-11!71;UBERON:0004121!4.02e-10!102;UBERON:0000924!4.02e-10!102;UBERON:0006601!4.02e-10!102;UBERON:0000033!3.45e-09!63;UBERON:0000475!3.19e-08!200;UBERON:0000062!1.01e-07!269;UBERON:0000955!5.69e-07!50;UBERON:0006238!5.69e-07!50;UBERON:0001049!6.88e-07!52;UBERON:0005068!6.88e-07!52;UBERON:0006241!6.88e-07!52;UBERON:0007135!6.88e-07!52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,8.57e-10,92;UBERON:0004121,1.74e-07,95;UBERON:0000924,1.74e-07,95;UBERON:0006601,1.74e-07,95;UBERON:0002346,3.22e-07,64;UBERON:0003075,3.22e-07,64;UBERON:0007284,3.22e-07,64;UBERON:0002369,5.06e-07,7;UBERON:0006858,5.06e-07,7;UBERON:0000073,7.71e-07,54;UBERON:0001017,9.78e-07,73 | |||
|phase1_expression=0,2.09385244583617,4.09499315450582,0,0,2.68606835059024,2.80335168714631,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53077922271926,0.198581902401771,0.261199789138935,0.799962113967033,1.60586496747019,5.7423196411502,3.87685796543167,2.37018355954478,1.71021077510736,1.76421090831952,2.43903561720835,0,0,0,0,0.332469290716985,0.408338712524738,0,0,0,0,0,0,0.125896817975577,0.608261587317087,0.183546752161682,0.782391344348039,48.1835595600787,69.860206109562,61.4398481074736,12.4587915246573,27.3129872293446,0,0,0,1.28629718017973,1.14613375975503,1.54701627683233,7.08107613008592,7.40587370980846,1.90149421051854,7.45457970552091,1.77858959222228,0,0,0,4.79360176829448,8.06858441175265,0.518448061542388,0.405017814995072,0.841299845405528,3.42781181284564,2.65042249141936,0.489963196859816,0.383381884072945,0.919218786610021,7.70811166995721,6.89511625660014,8.1411462625809,3.95658863190582,5.21479568533735,2.6045668527838,8.09630697104005,5.6276261003168,6.41752640662602,3.83017161115768,2.42031857358475,1.67759501242771,0.151452386666368,0.151143120213571,0.289864488701678,0,0,3.77792234146472,1.29955283489534,1.34408066129201,1.82577746171277,7.49893419343454,7.01422212427746,4.24007489412408,0.563373679106722,7.69958864485907,12.7402619853323,7.11066703153331,15.154372870785,13.1747130047051,14.6602089054287,0.45673551887624,0,122.167880450351,14.3992821215893,38.3626502673298,48.8904854182844,51.5471430689969,39.3922168904611,82.6886170949265,1.73036477414062,0,0,0,0,0,0,3.80615036115011,8.58731497935166,1.53274233125155,0.11981512450592,0,0,6.5907881338122,3.66000482254901,1.88481528169297,3.30266208365325,3.06858548796397,8.51930982694196,5.353961681236,0.101839363850316,0.124406970610093,0,2.94618598241064,0.520481771850815,3.67843367093557,3.06105620669094,4.21973489940002,7.34794190834341,7.30248205623644,6.09061209638237,8.01980449290949,0,0,0,0.219195732427575,0,0,0,0,0,0,0,0,0.938104239924385,0.540186184383045,0.23674473558521,0,0.308534225774757,0.465067889500816,0.268273401399619,0.350296027101508,1.48103864922132,9.35754545250843,8.83650024049827,10.3801991071986,11.4166059951346,7.38135303182045,2.10289948564127,3.2929475961371,0.330418782983798,1.05780226665418,0.213288250535234,0.232236671860439,0,0,0.889512175379481,0.951128130562796,0.474529061544512,1.31759163779209,1.00534083520108,0.596869416123452,1.16978452271472,0.898819408654221,0.864552199498777,1.1948476395262,0.758671603812327,1.14248512609729,2.25415471346161,1.01825663922657,1.16371492300575,2.80543279561274,3.16182685621286,7.0852871030209,9.41992367048249,7.52722699922983,0.889357881261447,0,0,0,0.202860121388503,0.241177159752417,0.50925170356284,1.15078454980324,0.486405680325106,2.47105271869273,1.43768206527355,3.72140947668503,6.86482880852033,3.28352541331245,2.51156378930677,5.30687873499704,2.77129785249907,0.37898282354097,0.325929952884052,0.169745085775188,0,1.34005005953453,2.61848004974615,11.9031525193257,2.52216230569906,5.97954662051692,2.71073106717728,1.96635977658886,3.62638461918381,4.19482269886384,0,0,0,0,10.4357883492065,6.44664276257117,10.6557714494839,0.252470927204373,0,0,0.215423397732799,0,0,0,0,0,0,3.53453448063988,0.283880170416537,0.178065603667255,0.325773918707152,0,9.2921596837974,0.242780636154981,0.302323556964751,2.07465587731488,4.72483028609236,4.30409207121498,2.06742634534577,2.18120237686503,1.78248689192361,4.42451461110142,11.5960469432499,10.3135543248187,0,0.540183282093931,0.258717367565509,1.07168517515796,0.177340233642274,0.713475270408282,0.164549020602121,0.913394847343798,0.704015124191131,1.27099242518292,0.220528398054962,0.8244312647074,1.13025098687134,0.542816324353403,1.3130957840345,0.656563598980245,0.874442509889552,4.82105785227325,0.170870880797853,0.206386867963223,0,0.376736914009382,0.410082683163076,0.228778173206523,0.169978429993855,0,0,1.90934123603023,0,0.203319467126849,0.108005340821801,0.209088296014469,0.218362563746178,0.404593039154462,1.07449492442937,1.30877970992015,0.777689839750757,21.1255366449555,0.56369293868419,0,1.15820943319968,2.52786544847262,4.1331143512874,3.71703476079712,1.99507305697782,1.69265700297135,1.57289016638566,0.483168241652012,0.864090018773596,1.58005560314089,0.202725215290164,0.513554785824136,0.51968329191118,0.895133478337407,0.596044064343795,0.961563596159751,0.443068581523732,0.706765149637033,0.685861259894999,0.705783295957884,0.974578807397524,1.92423683280659,2.33753804363138,2.26730383615211,0,0.0897138566094757,0.167884616364078,0.965947970160952,0.563047426353546,0.183151624267265,5.57357785605571,0,2.82375921308533,1.84130094602871,1.14579102687879,1.3748254587495,2.05524755931193,2.2661816921691,1.35004500046361,2.70192721934532,1.35942722695261,3.10656187051092,0.726511433089237,0,0.512200817262403,0.486213434136588,1.04806581313991,0.919217542250071,0.888986911206461,0.618105171716683,0.64183841918363,1.51618327058278,1.01391719956096,1.32038438970253,1.03005658216871,0.89635213366817,0.7466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| |||
|short_description=p1@Klhdc8a | |||
}} | |||
Revision as of 18:50, 13 September 2013
| Short description: | p1@Klhdc8a |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Klhdc8a_5end |
| Coexpression cluster: | MCL_coexpression_mm9:1176 |
| Association with transcript: | 0bp_to_ENSMUST00000046071, NM_144810, uc007con.1_5end |
| EntrezGene: | Klhdc8a |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| structure with developmental contribution from neural crest | 8.57e-10 | 92 |
| ectoderm-derived structure | 1.74e-07 | 95 |
| ectoderm | 1.74e-07 | 95 |
| presumptive ectoderm | 1.74e-07 | 95 |
| neurectoderm | 3.22e-07 | 64 |
| neural plate | 3.22e-07 | 64 |
| presumptive neural plate | 3.22e-07 | 64 |
| adrenal gland | 5.06e-07 | 7 |
| adrenal/interrenal gland | 5.06e-07 | 7 |
| regional part of nervous system | 7.71e-07 | 54 |
| central nervous system | 9.78e-07 | 73 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
