FFCP PHASE1:Hg19::chr7:128349106..128349128,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=84691|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=30704|TSSclassifier=S|UniProt=F8WC78,Q8NA48|association_with_transcript=0bp_to_ENST00000484425,ENST00000485070,uc003vnm.1,uc003vnn.1,uc010llo.1,uc011koq.1_5end|coexpression_cluster_id=C1|description=CAGE_peak_1_at_FAM71F1_5end|id=chr7:128349106..128349128,+|ontology_enrichment_celltype=CL:0002322!1.31e-15!5;CL:0000064!2.77e-08!3;CL:0005012!2.77e-08!3;CL:0000067!2.77e-08!3;CL:0002304!2.77e-08!3;CL:0000039!6.52e-07!7;CL:0000586!6.52e-07!7|ontology_enrichment_celltype_v019=CL:0002322;1.06e-39;5!CL:0002321;3.40e-13;15!CL:0000540;2.19e-12;6!CL:0000404;2.19e-12;6!CL:0000039;6.29e-11;7!CL:0000586;6.29e-11;7!CL:0000511;4.68e-09;1!CL:0002625;4.68e-09;1!CL:0000216;4.68e-09;1!CL:0000148;9.38e-08;10|ontology_enrichment_celltype_v019_2=CL:0002322,8.99e-40,5;CL:0000540,2.37e-12,6;CL:0000031,2.37e-12,6;CL:0000404,2.37e-12,6;CL:0000039,6.96e-11,7;CL:0000586,6.96e-11,7;CL:0000047,2.14e-09,8;CL:0000511,3.83e-09,1;CL:0002625,3.83e-09,1;CL:0000216,3.83e-09,1;CL:0000148,8.74e-08,10;CL:0000541,8.74e-08,10|ontology_enrichment_development_v019=UBERON:0009117;4.61e-29;10!UBERON:0005564;4.61e-29;10!CL:0000031;2.19e-12;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:2355;1.56e-09;1!DOID:3095;4.13e-09;22!DOID:2994;4.13e-09;22!DOID:2513;4.68e-09;1|ontology_enrichment_disease_v019_2=DOID:2355,1.32e-09,1;DOID:2513,4.15e-09,1;DOID:3095,4.35e-09,22;DOID:2994,4.35e-09,22|ontology_enrichment_uberon=UBERON:0000473!9.39e-14!8;UBERON:0003135!7.52e-13!11;UBERON:0001778!2.77e-08!3;UBERON:0001775!2.77e-08!3|ontology_enrichment_uberon_v019=UBERON:0000473;5.76e-36;8!UBERON:0003135;4.60e-26;11!UBERON:0000991;3.33e-18;21!UBERON:0003101;8.11e-13;22!UBERON:0000079;8.11e-13;22!UBERON:0001136;4.68e-09;1!UBERON:0001343;4.68e-09;1!UBERON:0004910;4.68e-09;1!UBERON:0004813;4.68e-09;1|ontology_enrichment_uberon_v019_2=UBERON:0000473,5.94e-36,8;UBERON:0003135,4.71e-26,11;UBERON:0000991,3.33e-18,21;UBERON:0009196,3.33e-18,21;UBERON:0009117,3.33e-18,21;UBERON:0005564,3.33e-18,21;UBERON:0004176,2.42e-17,22;UBERON:0003101,8.20e-13,22;UBERON:0000079,8.20e-13,22;UBERON:0001136,3.83e-09,1;UBERON:0001343,3.83e-09,1;UBERON:0004910,3.83e-09,1;UBERON:0005154,3.83e-09,1;UBERON:0005295,3.83e-09,1;UBERON:0004813,3.83e-09,1;UBERON:0005297,3.83e-09,1;UBERON:0005294,3.83e-09,1;UBERON:0010141,3.83e-09,1;UBERON:0005891,3.83e-09,1;UBERON:0002323,6.94e-08,46;UBERON:0003133,1.60e-07,48;UBERON:0004458,2.36e-07,49|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,2.01697543935533,0,1.46062018077475,0.487932798790507,0,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0.087834785693126,14.9316146067392,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,1.06748995729705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0.286804595389004,2.31750041646231,3.5783037446801,2.32387885739037,2.48786532036889,4.79409616663694,14.5990943630332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.425325291727159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.61460037580088,0.099972991182057,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256278298511402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451199612907412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0,0.154048617114644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0.202182481573316,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0.608731130888112,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66866030566487,0,0,0,0,0,0,0,0,0,0,0,0,0,4.4310529965985,1.55519793830904,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0.652931232636591,0.141353071433941,0.216388639742091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.450970258243478,0,0,0,0,0,0,0.138674673013139,0,0,0.0870592065804026,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.720599767084807,0,0,0,0,0,4.99572659188128,0,0,1.28602518772015,4.53880140770872,1.24632101408756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0,0.400027764663154,0,0,0,0,0.428883182749851,0,0,0,0,0,0,0,0,0,0.168942440653073,0,0,0,0,0.584580926518165,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0.173858272302579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0,0.0999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,5.80365554241363,5.46327859818478,0,3.87557553019531,2.13773924212448,4.41095517767256,0,27.2803313585662,57.3443238534222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p1@FAM71F1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=84691 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30704 | |||
|TSSclassifier=S | |||
|UniProt=F8WC78,Q8NA48 | |||
|association_with_transcript=0bp_to_ENST00000484425,ENST00000485070,uc003vnm.1,uc003vnn.1,uc010llo.1,uc011koq.1_5end | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_1_at_FAM71F1_5end | |||
|id=chr7:128349106..128349128,+ | |||
|ontology_enrichment_celltype=CL:0002322!1.31e-15!5;CL:0000064!2.77e-08!3;CL:0005012!2.77e-08!3;CL:0000067!2.77e-08!3;CL:0002304!2.77e-08!3;CL:0000039!6.52e-07!7;CL:0000586!6.52e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0002322;1.06e-39;5!CL:0002321;3.40e-13;15!CL:0000540;2.19e-12;6!CL:0000404;2.19e-12;6!CL:0000039;6.29e-11;7!CL:0000586;6.29e-11;7!CL:0000511;4.68e-09;1!CL:0002625;4.68e-09;1!CL:0000216;4.68e-09;1!CL:0000148;9.38e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,8.99e-40,5;CL:0000540,2.37e-12,6;CL:0000031,2.37e-12,6;CL:0000404,2.37e-12,6;CL:0000039,6.96e-11,7;CL:0000586,6.96e-11,7;CL:0000047,2.14e-09,8;CL:0000511,3.83e-09,1;CL:0002625,3.83e-09,1;CL:0000216,3.83e-09,1;CL:0000148,8.74e-08,10;CL:0000541,8.74e-08,10 | |||
|ontology_enrichment_development_v019=UBERON:0009117;4.61e-29;10!UBERON:0005564;4.61e-29;10!CL:0000031;2.19e-12;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2355;1.56e-09;1!DOID:3095;4.13e-09;22!DOID:2994;4.13e-09;22!DOID:2513;4.68e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:2355,1.32e-09,1;DOID:2513,4.15e-09,1;DOID:3095,4.35e-09,22;DOID:2994,4.35e-09,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!9.39e-14!8;UBERON:0003135!7.52e-13!11;UBERON:0001778!2.77e-08!3;UBERON:0001775!2.77e-08!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;5.76e-36;8!UBERON:0003135;4.60e-26;11!UBERON:0000991;3.33e-18;21!UBERON:0003101;8.11e-13;22!UBERON:0000079;8.11e-13;22!UBERON:0001136;4.68e-09;1!UBERON:0001343;4.68e-09;1!UBERON:0004910;4.68e-09;1!UBERON:0004813;4.68e-09;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,5.94e-36,8;UBERON:0003135,4.71e-26,11;UBERON:0000991,3.33e-18,21;UBERON:0009196,3.33e-18,21;UBERON:0009117,3.33e-18,21;UBERON:0005564,3.33e-18,21;UBERON:0004176,2.42e-17,22;UBERON:0003101,8.20e-13,22;UBERON:0000079,8.20e-13,22;UBERON:0001136,3.83e-09,1;UBERON:0001343,3.83e-09,1;UBERON:0004910,3.83e-09,1;UBERON:0005154,3.83e-09,1;UBERON:0005295,3.83e-09,1;UBERON:0004813,3.83e-09,1;UBERON:0005297,3.83e-09,1;UBERON:0005294,3.83e-09,1;UBERON:0010141,3.83e-09,1;UBERON:0005891,3.83e-09,1;UBERON:0002323,6.94e-08,46;UBERON:0003133,1.60e-07,48;UBERON:0004458,2.36e-07,49 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,2.01697543935533,0,1.46062018077475,0.487932798790507,0,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0.087834785693126,14.9316146067392,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,1.06748995729705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0.286804595389004,2.31750041646231,3.5783037446801,2.32387885739037,2.48786532036889,4.79409616663694,14.5990943630332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.425325291727159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.61460037580088,0.099972991182057,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256278298511402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451199612907412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0,0.154048617114644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0.202182481573316,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0.608731130888112,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66866030566487,0,0,0,0,0,0,0,0,0,0,0,0,0,4.4310529965985,1.55519793830904,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0.652931232636591,0.141353071433941,0.216388639742091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.450970258243478,0,0,0,0,0,0,0.138674673013139,0,0,0.0870592065804026,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.720599767084807,0,0,0,0,0,4.99572659188128,0,0,1.28602518772015,4.53880140770872,1.24632101408756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0,0.400027764663154,0,0,0,0,0.428883182749851,0,0,0,0,0,0,0,0,0,0.168942440653073,0,0,0,0,0.584580926518165,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0.173858272302579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0,0.0999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,5.80365554241363,5.46327859818478,0,3.87557553019531,2.13773924212448,4.41095517767256,0,27.2803313585662,57.3443238534222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@FAM71F1 | |||
}} |
Revision as of 23:06, 13 September 2013
Short description: | p1@FAM71F1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_FAM71F1_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000484425, ENST00000485070, uc003vnm.1, uc003vnn.1, uc010llo.1, uc011koq.1_5end |
EntrezGene: | FAM71F1 |
HGNC: | 30704 |
UniProt: | F8WC78Q8NA48 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 8.99e-40 | 5 |
neuron | 2.37e-12 | 6 |
neuroblast | 2.37e-12 | 6 |
electrically signaling cell | 2.37e-12 | 6 |
germ line cell | 6.96e-11 | 7 |
germ cell | 6.96e-11 | 7 |
neuronal stem cell | 2.14e-09 | 8 |
androgen binding protein secreting cell | 3.83e-09 | 1 |
seminiferous tubule epithelial cell | 3.83e-09 | 1 |
Sertoli cell | 3.83e-09 | 1 |
melanocyte | 8.74e-08 | 10 |
melanoblast | 8.74e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
testis | 5.94e-36 | 8 |
male reproductive organ | 4.71e-26 | 11 |
gonad | 3.33e-18 | 21 |
indifferent external genitalia | 3.33e-18 | 21 |
indifferent gonad | 3.33e-18 | 21 |
gonad primordium | 3.33e-18 | 21 |
external genitalia | 2.42e-17 | 22 |
male organism | 8.20e-13 | 22 |
male reproductive system | 8.20e-13 | 22 |
mesothelium | 3.83e-09 | 1 |
seminiferous tubule of testis | 3.83e-09 | 1 |
epithelium of male gonad | 3.83e-09 | 1 |
epithelial cord | 3.83e-09 | 1 |
sex cord | 3.83e-09 | 1 |
seminiferous tubule epithelium | 3.83e-09 | 1 |
testis sex cord | 3.83e-09 | 1 |
genital ridge | 3.83e-09 | 1 |
primitive sex cord of indifferent gonad | 3.83e-09 | 1 |
coelomic epithelium | 3.83e-09 | 1 |
body cavity | 6.94e-08 | 46 |
reproductive organ | 1.60e-07 | 48 |
body cavity or lining | 2.36e-07 | 49 |
Ontology term | p-value | n |
---|---|---|
anemia | 1.32e-09 | 1 |
basal cell carcinoma | 4.15e-09 | 1 |
germ cell and embryonal cancer | 4.35e-09 | 22 |
germ cell cancer | 4.35e-09 | 22 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.