FFCP PHASE1:Mm9::chr4:11413094..11413111,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=66185|HGNC=|MCL_coexpression_id=36|UniProt=A2AIV2,E9PZY8|association_with_transcript=0bp_to_ENSMUST00000055372,ENSMUST00000059914,NM_001081183,uc008rzo.1,uc008rzp.1,uc008rzq.1_5end|description=CAGE_peak_2_at_1110037F02Rik_5end|id=chr4:11413094..11413111,+|ontology_enrichment_celltype=CL:0000838!5.13e-08!12;CL:0000542!1.63e-07!13;CL:0000051!1.63e-07!13;CL:0000084!2.40e-07!11;CL:0000827!2.40e-07!11;CL:0000988!4.55e-07!32;CL:0002032!4.55e-07!32;CL:0000037!4.55e-07!32;CL:0000566!4.55e-07!32;CL:0000837!4.55e-07!32|ontology_enrichment_celltype_v019_2=CL:0000838,4.65e-08,12;CL:0000542,1.49e-07,13;CL:0000051,1.49e-07,13;CL:0000988,1.75e-07,32;CL:0002032,1.75e-07,32;CL:0000037,1.75e-07,32;CL:0000837,1.75e-07,32;CL:0000084,2.19e-07,11;CL:0000827,2.19e-07,11|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000926!1.44e-09!193;UBERON:0004120!1.44e-09!193;UBERON:0006603!1.44e-09!193;UBERON:0002193!3.04e-09!48;UBERON:0004177!4.48e-09!29;UBERON:0002405!1.78e-08!70;UBERON:0002390!3.21e-08!45;UBERON:0003061!3.21e-08!45;UBERON:0003408!1.36e-07!24;UBERON:0005057!1.88e-07!51;UBERON:0000077!1.97e-07!97;UBERON:0002370!2.74e-07!23;UBERON:0000974!2.74e-07!23;UBERON:0004807!2.74e-07!23;UBERON:0005058!2.74e-07!23;UBERON:0003351!2.74e-07!23;UBERON:0009113!2.74e-07!23;UBERON:0003295!2.74e-07!23;UBERON:0009722!2.74e-07!23;UBERON:0005562!2.74e-07!23;UBERON:0007690!2.74e-07!23;UBERON:0001048!5.06e-07!147;UBERON:0001041!5.16e-07!92;UBERON:0004119!6.75e-07!130;UBERON:0000925!6.75e-07!130;UBERON:0006595!6.75e-07!130;UBERON:0001004!7.97e-07!42|ontology_enrichment_uberon_v019_2=UBERON:0002193,6.05e-10,48;UBERON:0002405,6.05e-10,48;UBERON:0000077,6.18e-10,35;UBERON:0004177,1.82e-09,29;UBERON:0005057,1.82e-09,29;UBERON:0002390,6.87e-09,45;UBERON:0003061,6.87e-09,45;UBERON:0000926,3.58e-08,120;UBERON:0004120,3.58e-08,120;UBERON:0006603,3.58e-08,120;UBERON:0003408,5.68e-08,24;UBERON:0002370,1.16e-07,23;UBERON:0000974,1.16e-07,23;UBERON:0004807,1.16e-07,23;UBERON:0005058,1.16e-07,23;UBERON:0003351,1.16e-07,23;UBERON:0009113,1.16e-07,23;UBERON:0003295,1.16e-07,23;UBERON:0009722,1.16e-07,23;UBERON:0005562,1.16e-07,23;UBERON:0007690,1.16e-07,23;UBERON:0001041,1.84e-07,80;UBERON:0004119,4.38e-07,118;UBERON:0000925,4.38e-07,118;UBERON:0006595,4.38e-07,118;UBERON:0001004,6.33e-07,42;UBERON:0001007,7.69e-07,116;UBERON:0001555,7.69e-07,116;UBERON:0007026,7.69e-07,116;UBERON:0006562,9.03e-07,24;UBERON:0001557,9.03e-07,24;UBERON:0001042,9.03e-07,24;UBERON:0008814,9.03e-07,24;UBERON:0009145,9.03e-07,24|phase1_expression=1.60148847104794,1.04692622291808,2.27499619694768,3.32710632437513,2.50447864973174,1.00727563147134,1.40167584357315,16.9151553708465,10.2775767170717,7.72412936862578,6.8487187290202,5.02564601670619,15.9216678836021,14.7740480088106,5.99597571268193,10.1237633694913,2.09868563438444,25.8678975593755,22.4867671113412,26.7365480632759,2.72138528483423,8.34043990087437,4.70159620450084,3.51983330145495,3.21172993494038,0,0.430761996159075,1.07735616342945,1.14014051673824,0.504060259519861,0.665191531965914,1.27006134691926,0,0,1.73310971850765,1.49611180822643,0.612508068787107,17.5783284909501,8.5946887897618,16.2292360631877,19.4116391050235,16.3930916390027,25.24653835762,2.14024590558481,1.4192770370732,2.56965453026354,0,0.65407546914134,0.439372365468944,0.777719596297134,1.1198913730029,0,22.3150866056789,20.3101399763176,19.4934403502629,1.28629718017973,0.573066879877513,0,0.606949382578793,0.528990979272033,0,1.0165335962074,0,0.449949858640699,0,0,0,0,1.03689612308478,1.21505344498522,0.420649922702764,0,0.883474163806454,1.10241719293459,0.862609239164127,0,0,0.510749352340751,0.153606533256243,0.131886287730194,0.365950574409639,1.56274011167028,0.279182999001381,1.68828783009504,0.30559649555362,0.294628585473668,0.569486723196412,0.372798891650601,0.757261933331841,1.058001841495,6.66688324013859,2.58127163094416,0.679971333707751,0,1.94932925234301,1.34408066129201,2.10666630197628,0.852151612890289,1.03914401841148,1.06001872353102,1.26759077799012,0,0,0,0.865964164044856,2.02687892380079,2.02209778005913,1.1418387971906,20.4560928081266,1.63286352971307,2.08182392119363,1.52232739156071,1.38369298353635,1.65794904607885,1.52865319276416,1.13099932196708,3.46072954828123,2.60278842455841,4.42305275974937,1.61766849947409,4.63767188766826,4.363877278217,1.86391761218122,0.878342391034642,1.67557365450764,0,6.82946209683746,2.99951365496704,5.97230067243404,0.449371918214468,2.28750301409313,1.38219787324151,1.73824320192276,1.53429274398198,1.66230435647648,0.973447578406546,2.64782346010822,5.47390670684409,1.0108910337347,1.47309299120532,2.08192708740326,1.37941262660084,1.62055916824814,2.71268672104287,2.10913147369116,2.3060469651273,2.62364828767241,1.55222022443409,3.66465587985832,2.83659120251729,2.46331573829528,2.6303487891309,3.05851974148158,2.43776516565517,3.49829631893504,2.9855140022774,3.51106593656617,5.40430604940902,3.6941254921427,1.6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| ||
|EntrezGene=66185 | |||
|HGNC= | |||
|MCL_coexpression_id=36 | |||
|UniProt=A2AIV2,E9PZY8 | |||
|association_with_transcript=0bp_to_ENSMUST00000055372,ENSMUST00000059914,NM_001081183,uc008rzo.1,uc008rzp.1,uc008rzq.1_5end | |||
|description=CAGE_peak_2_at_1110037F02Rik_5end | |||
|id=chr4:11413094..11413111,+ | |||
|ontology_enrichment_celltype=CL:0000838!5.13e-08!12;CL:0000542!1.63e-07!13;CL:0000051!1.63e-07!13;CL:0000084!2.40e-07!11;CL:0000827!2.40e-07!11;CL:0000988!4.55e-07!32;CL:0002032!4.55e-07!32;CL:0000037!4.55e-07!32;CL:0000566!4.55e-07!32;CL:0000837!4.55e-07!32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,4.65e-08,12;CL:0000542,1.49e-07,13;CL:0000051,1.49e-07,13;CL:0000988,1.75e-07,32;CL:0002032,1.75e-07,32;CL:0000037,1.75e-07,32;CL:0000837,1.75e-07,32;CL:0000084,2.19e-07,11;CL:0000827,2.19e-07,11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!1.44e-09!193;UBERON:0004120!1.44e-09!193;UBERON:0006603!1.44e-09!193;UBERON:0002193!3.04e-09!48;UBERON:0004177!4.48e-09!29;UBERON:0002405!1.78e-08!70;UBERON:0002390!3.21e-08!45;UBERON:0003061!3.21e-08!45;UBERON:0003408!1.36e-07!24;UBERON:0005057!1.88e-07!51;UBERON:0000077!1.97e-07!97;UBERON:0002370!2.74e-07!23;UBERON:0000974!2.74e-07!23;UBERON:0004807!2.74e-07!23;UBERON:0005058!2.74e-07!23;UBERON:0003351!2.74e-07!23;UBERON:0009113!2.74e-07!23;UBERON:0003295!2.74e-07!23;UBERON:0009722!2.74e-07!23;UBERON:0005562!2.74e-07!23;UBERON:0007690!2.74e-07!23;UBERON:0001048!5.06e-07!147;UBERON:0001041!5.16e-07!92;UBERON:0004119!6.75e-07!130;UBERON:0000925!6.75e-07!130;UBERON:0006595!6.75e-07!130;UBERON:0001004!7.97e-07!42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,6.05e-10,48;UBERON:0002405,6.05e-10,48;UBERON:0000077,6.18e-10,35;UBERON:0004177,1.82e-09,29;UBERON:0005057,1.82e-09,29;UBERON:0002390,6.87e-09,45;UBERON:0003061,6.87e-09,45;UBERON:0000926,3.58e-08,120;UBERON:0004120,3.58e-08,120;UBERON:0006603,3.58e-08,120;UBERON:0003408,5.68e-08,24;UBERON:0002370,1.16e-07,23;UBERON:0000974,1.16e-07,23;UBERON:0004807,1.16e-07,23;UBERON:0005058,1.16e-07,23;UBERON:0003351,1.16e-07,23;UBERON:0009113,1.16e-07,23;UBERON:0003295,1.16e-07,23;UBERON:0009722,1.16e-07,23;UBERON:0005562,1.16e-07,23;UBERON:0007690,1.16e-07,23;UBERON:0001041,1.84e-07,80;UBERON:0004119,4.38e-07,118;UBERON:0000925,4.38e-07,118;UBERON:0006595,4.38e-07,118;UBERON:0001004,6.33e-07,42;UBERON:0001007,7.69e-07,116;UBERON:0001555,7.69e-07,116;UBERON:0007026,7.69e-07,116;UBERON:0006562,9.03e-07,24;UBERON:0001557,9.03e-07,24;UBERON:0001042,9.03e-07,24;UBERON:0008814,9.03e-07,24;UBERON:0009145,9.03e-07,24 | |||
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| |||
|short_description=p2@1110037F02Rik | |||
}} |
Revision as of 03:28, 14 September 2013
Short description: | p2@1110037F02Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_1110037F02Rik_5end |
Coexpression cluster: | MCL_coexpression_mm9:36 |
Association with transcript: | 0bp_to_ENSMUST00000055372, ENSMUST00000059914, NM_001081183, uc008rzo.1, uc008rzp.1, uc008rzq.1_5end |
EntrezGene: | 1110037F02Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 4.65e-08 | 12 |
lymphocyte | 1.49e-07 | 13 |
common lymphoid progenitor | 1.49e-07 | 13 |
hematopoietic cell | 1.75e-07 | 32 |
hematopoietic oligopotent progenitor cell | 1.75e-07 | 32 |
hematopoietic stem cell | 1.75e-07 | 32 |
hematopoietic multipotent progenitor cell | 1.75e-07 | 32 |
T cell | 2.19e-07 | 11 |
pro-T cell | 2.19e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 6.05e-10 | 48 |
immune system | 6.05e-10 | 48 |
mixed endoderm/mesoderm-derived structure | 6.18e-10 | 35 |
hemopoietic organ | 1.82e-09 | 29 |
immune organ | 1.82e-09 | 29 |
hematopoietic system | 6.87e-09 | 45 |
blood island | 6.87e-09 | 45 |
mesoderm | 3.58e-08 | 120 |
mesoderm-derived structure | 3.58e-08 | 120 |
presumptive mesoderm | 3.58e-08 | 120 |
gland of gut | 5.68e-08 | 24 |
thymus | 1.16e-07 | 23 |
neck | 1.16e-07 | 23 |
respiratory system epithelium | 1.16e-07 | 23 |
hemolymphoid system gland | 1.16e-07 | 23 |
pharyngeal epithelium | 1.16e-07 | 23 |
thymic region | 1.16e-07 | 23 |
pharyngeal gland | 1.16e-07 | 23 |
entire pharyngeal arch endoderm | 1.16e-07 | 23 |
thymus primordium | 1.16e-07 | 23 |
early pharyngeal endoderm | 1.16e-07 | 23 |
foregut | 1.84e-07 | 80 |
endoderm-derived structure | 4.38e-07 | 118 |
endoderm | 4.38e-07 | 118 |
presumptive endoderm | 4.38e-07 | 118 |
respiratory system | 6.33e-07 | 42 |
digestive system | 7.69e-07 | 116 |
digestive tract | 7.69e-07 | 116 |
primitive gut | 7.69e-07 | 116 |
pharynx | 9.03e-07 | 24 |
upper respiratory tract | 9.03e-07 | 24 |
chordate pharynx | 9.03e-07 | 24 |
pharyngeal arch system | 9.03e-07 | 24 |
pharyngeal region of foregut | 9.03e-07 | 24 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.