FFCP PHASE1:Mm9::chr4:133428912..133428959,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20111|HGNC=|UniProt=F6Q8A4|association_with_transcript=0bp_to_ENSMUST00000137486_5end|description=CAGE_peak_2_at_Rps6ka1_5end|id=chr4:133428912..133428959,-|ontology_enrichment_celltype=CL:0000988!2.22e-12!32;CL:0002032!2.22e-12!32;CL:0000037!2.22e-12!32;CL:0000566!2.22e-12!32;CL:0000837!2.22e-12!32;CL:0002031!6.39e-12!25;CL:0000738!2.08e-08!17;CL:0002087!2.08e-08!17;CL:0000838!1.55e-07!12;CL:0000084!3.21e-07!11;CL:0000827!3.21e-07!11;CL:0000049!5.68e-07!19;CL:0000791!9.13e-07!9;CL:0000789!9.13e-07!9;CL:0002420!9.13e-07!9;CL:0002419!9.13e-07!9;CL:0000790!9.13e-07!9|ontology_enrichment_celltype_v019_2=CL:0000988,1.69e-14,32;CL:0002032,1.69e-14,32;CL:0000037,1.69e-14,32;CL:0000837,1.69e-14,32;CL:0002031,4.25e-14,25;CL:0000738,1.71e-09,17;CL:0002087,1.71e-09,17;CL:0002320,3.73e-09,46;CL:0000134,3.73e-09,46;CL:0000838,1.39e-08,12;CL:0000049,3.15e-08,19;CL:0000084,3.27e-08,11;CL:0000827,3.27e-08,11;CL:0000791,1.11e-07,9;CL:0000789,1.11e-07,9;CL:0002420,1.11e-07,9;CL:0002419,1.11e-07,9;CL:0000790,1.11e-07,9;CL:0000763,1.54e-07,16;CL:0000542,1.67e-07,13;CL:0000051,1.67e-07,13;CL:0000624,3.70e-07,8;CL:0000839,6.60e-07,13;CL:0000219,7.39e-07,54|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!1.45e-19!48;UBERON:0002405!6.75e-19!70;UBERON:0002390!2.77e-18!45;UBERON:0003061!2.77e-18!45;UBERON:0004177!1.11e-10!29;UBERON:0005057!2.60e-10!51;UBERON:0002371!1.66e-08!16;UBERON:0001474!3.79e-08!22;UBERON:0004765!3.79e-08!22;UBERON:0001434!3.79e-08!22;UBERON:0003408!1.20e-07!24;UBERON:0002370!2.46e-07!23;UBERON:0000974!2.46e-07!23;UBERON:0004807!2.46e-07!23;UBERON:0005058!2.46e-07!23;UBERON:0003351!2.46e-07!23;UBERON:0009113!2.46e-07!23;UBERON:0003295!2.46e-07!23;UBERON:0009722!2.46e-07!23;UBERON:0005562!2.46e-07!23;UBERON:0007690!2.46e-07!23;UBERON:0003081!3.26e-07!88;UBERON:0006562!4.10e-07!24;UBERON:0001557!4.10e-07!24;UBERON:0001042!4.10e-07!24;UBERON:0008814!4.10e-07!24;UBERON:0009145!4.10e-07!24;UBERON:0000926!4.95e-07!193;UBERON:0004120!4.95e-07!193;UBERON:0006603!4.95e-07!193|ontology_enrichment_uberon_v019_2=UBERON:0002193,8.32e-24,48;UBERON:0002405,8.32e-24,48;UBERON:0002390,2.73e-22,45;UBERON:0003061,2.73e-22,45;UBERON:0004177,2.93e-13,29;UBERON:0005057,2.93e-13,29;UBERON:0001474,6.17e-10,22;UBERON:0004765,6.17e-10,22;UBERON:0001434,6.17e-10,22;UBERON:0000077,9.31e-10,35;UBERON:0002371,1.02e-09,16;UBERON:0003408,1.33e-09,24;UBERON:0002370,3.10e-09,23;UBERON:0000974,3.10e-09,23;UBERON:0004807,3.10e-09,23;UBERON:0005058,3.10e-09,23;UBERON:0003351,3.10e-09,23;UBERON:0009113,3.10e-09,23;UBERON:0003295,3.10e-09,23;UBERON:0009722,3.10e-09,23;UBERON:0005562,3.10e-09,23;UBERON:0007690,3.10e-09,23;UBERON:0002384,3.73e-09,46;UBERON:0006562,1.72e-08,24;UBERON:0001557,1.72e-08,24;UBERON:0001042,1.72e-08,24;UBERON:0008814,1.72e-08,24;UBERON:0009145,1.72e-08,24;UBERON:0003081,3.49e-08,87;UBERON:0001041,3.85e-08,80;UBERON:0002530,5.45e-08,65;UBERON:0002368,9.79e-08,60;UBERON:0002204,3.50e-07,32|phase1_expression=0,0,0,0,0,0.16787927191189,0,64.303415073905,19.42884365693,42.5997437906028,25.5114772656002,51.453042551992,58.3794489065411,58.2219880110523,34.3103054670133,42.3173308844736,60.8618833971488,22.0823515750766,15.3568165638427,15.2780274647291,1.36069264241712,6.85107563286109,4.17919662622297,7.51964387129011,5.27641346454491,0,0,0.215471232685889,0.950117097281869,0.504060259519861,0.665191531965914,6.35030673459631,8.61090702618398,0,0,0.166234645358492,0,62.7797446105362,27.346737058333,38.7407570540611,51.7643709467293,56.0097297665925,42.2394007137104,0,0,0,0,0,0,0,0,0,7.88578248471361,28.2891235384424,18.821252751978,0,0.85960031981627,0,0,0,0,0.338844532069132,0,43.1951864295072,29.6659908770092,39.0764063220355,9.58720353658895,7.30014780110954,0,0,0,0.285650984403804,0,0,0.191690942036473,0,0,0.127687338085188,0.153606533256243,0,0.0914876436024097,0,0.279182999001381,0.56276261003168,0.61119299110724,0,0.427115042397309,0.186399445825301,1.74170244666323,2.49386148352392,0,0,0,0,0,0,1.96622188184453,0,0,0,0,0,0,0,0,0,0,2.74041311325744,23.8222852955398,3.56261133755579,4.51061849591953,3.04465478312141,4.15107895060905,1.50722640552623,1.05829836422134,1.0053327306374,0.247194967734374,1.87979163995885,27.4229271104461,5.3383060482645,22.7466764014205,21.819386391085,0,0.292780797011547,0,2.55457055208591,3.59445373517761,4.79922184794726,3.30382590389968,0.299581278809645,0.457500602818626,0.376963056338593,0.347648640384553,0.511430914660661,0.20778804455956,0,0.101839363850316,17.2925689148029,0.505445516867349,2.10441855886474,0.130120442962704,0,0,1.65775299619287,0.136072998302656,0,0.187403449119458,0.517406741478031,0,0,0,1.09597866213787,0.556094498451196,0.348252166522167,0.411564272815887,0.59710280045548,4.91549231119264,3.3455227924913,3.40996199274711,0.414251545071004,1.40715635988658,0,0.23674473558521,0.196764231747404,0,0,0,0.350296027101508,0,0.492502392237286,0.162137619091711,0.438599962275997,1.3173006917463,0.9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| ||
|EntrezGene=20111 | |||
|HGNC= | |||
|UniProt=F6Q8A4 | |||
|association_with_transcript=0bp_to_ENSMUST00000137486_5end | |||
|description=CAGE_peak_2_at_Rps6ka1_5end | |||
|id=chr4:133428912..133428959,- | |||
|ontology_enrichment_celltype=CL:0000988!2.22e-12!32;CL:0002032!2.22e-12!32;CL:0000037!2.22e-12!32;CL:0000566!2.22e-12!32;CL:0000837!2.22e-12!32;CL:0002031!6.39e-12!25;CL:0000738!2.08e-08!17;CL:0002087!2.08e-08!17;CL:0000838!1.55e-07!12;CL:0000084!3.21e-07!11;CL:0000827!3.21e-07!11;CL:0000049!5.68e-07!19;CL:0000791!9.13e-07!9;CL:0000789!9.13e-07!9;CL:0002420!9.13e-07!9;CL:0002419!9.13e-07!9;CL:0000790!9.13e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,1.69e-14,32;CL:0002032,1.69e-14,32;CL:0000037,1.69e-14,32;CL:0000837,1.69e-14,32;CL:0002031,4.25e-14,25;CL:0000738,1.71e-09,17;CL:0002087,1.71e-09,17;CL:0002320,3.73e-09,46;CL:0000134,3.73e-09,46;CL:0000838,1.39e-08,12;CL:0000049,3.15e-08,19;CL:0000084,3.27e-08,11;CL:0000827,3.27e-08,11;CL:0000791,1.11e-07,9;CL:0000789,1.11e-07,9;CL:0002420,1.11e-07,9;CL:0002419,1.11e-07,9;CL:0000790,1.11e-07,9;CL:0000763,1.54e-07,16;CL:0000542,1.67e-07,13;CL:0000051,1.67e-07,13;CL:0000624,3.70e-07,8;CL:0000839,6.60e-07,13;CL:0000219,7.39e-07,54 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.45e-19!48;UBERON:0002405!6.75e-19!70;UBERON:0002390!2.77e-18!45;UBERON:0003061!2.77e-18!45;UBERON:0004177!1.11e-10!29;UBERON:0005057!2.60e-10!51;UBERON:0002371!1.66e-08!16;UBERON:0001474!3.79e-08!22;UBERON:0004765!3.79e-08!22;UBERON:0001434!3.79e-08!22;UBERON:0003408!1.20e-07!24;UBERON:0002370!2.46e-07!23;UBERON:0000974!2.46e-07!23;UBERON:0004807!2.46e-07!23;UBERON:0005058!2.46e-07!23;UBERON:0003351!2.46e-07!23;UBERON:0009113!2.46e-07!23;UBERON:0003295!2.46e-07!23;UBERON:0009722!2.46e-07!23;UBERON:0005562!2.46e-07!23;UBERON:0007690!2.46e-07!23;UBERON:0003081!3.26e-07!88;UBERON:0006562!4.10e-07!24;UBERON:0001557!4.10e-07!24;UBERON:0001042!4.10e-07!24;UBERON:0008814!4.10e-07!24;UBERON:0009145!4.10e-07!24;UBERON:0000926!4.95e-07!193;UBERON:0004120!4.95e-07!193;UBERON:0006603!4.95e-07!193 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,8.32e-24,48;UBERON:0002405,8.32e-24,48;UBERON:0002390,2.73e-22,45;UBERON:0003061,2.73e-22,45;UBERON:0004177,2.93e-13,29;UBERON:0005057,2.93e-13,29;UBERON:0001474,6.17e-10,22;UBERON:0004765,6.17e-10,22;UBERON:0001434,6.17e-10,22;UBERON:0000077,9.31e-10,35;UBERON:0002371,1.02e-09,16;UBERON:0003408,1.33e-09,24;UBERON:0002370,3.10e-09,23;UBERON:0000974,3.10e-09,23;UBERON:0004807,3.10e-09,23;UBERON:0005058,3.10e-09,23;UBERON:0003351,3.10e-09,23;UBERON:0009113,3.10e-09,23;UBERON:0003295,3.10e-09,23;UBERON:0009722,3.10e-09,23;UBERON:0005562,3.10e-09,23;UBERON:0007690,3.10e-09,23;UBERON:0002384,3.73e-09,46;UBERON:0006562,1.72e-08,24;UBERON:0001557,1.72e-08,24;UBERON:0001042,1.72e-08,24;UBERON:0008814,1.72e-08,24;UBERON:0009145,1.72e-08,24;UBERON:0003081,3.49e-08,87;UBERON:0001041,3.85e-08,80;UBERON:0002530,5.45e-08,65;UBERON:0002368,9.79e-08,60;UBERON:0002204,3.50e-07,32 | |||
|phase1_expression=0,0,0,0,0,0.16787927191189,0,64.303415073905,19.42884365693,42.5997437906028,25.5114772656002,51.453042551992,58.3794489065411,58.2219880110523,34.3103054670133,42.3173308844736,60.8618833971488,22.0823515750766,15.3568165638427,15.2780274647291,1.36069264241712,6.85107563286109,4.17919662622297,7.51964387129011,5.27641346454491,0,0,0.215471232685889,0.950117097281869,0.504060259519861,0.665191531965914,6.35030673459631,8.61090702618398,0,0,0.166234645358492,0,62.7797446105362,27.346737058333,38.7407570540611,51.7643709467293,56.0097297665925,42.2394007137104,0,0,0,0,0,0,0,0,0,7.88578248471361,28.2891235384424,18.821252751978,0,0.85960031981627,0,0,0,0,0.338844532069132,0,43.1951864295072,29.6659908770092,39.0764063220355,9.58720353658895,7.30014780110954,0,0,0,0.285650984403804,0,0,0.191690942036473,0,0,0.127687338085188,0.153606533256243,0,0.0914876436024097,0,0.279182999001381,0.56276261003168,0.61119299110724,0,0.427115042397309,0.186399445825301,1.74170244666323,2.49386148352392,0,0,0,0,0,0,1.96622188184453,0,0,0,0,0,0,0,0,0,0,2.74041311325744,23.8222852955398,3.56261133755579,4.51061849591953,3.04465478312141,4.15107895060905,1.50722640552623,1.05829836422134,1.0053327306374,0.247194967734374,1.87979163995885,27.4229271104461,5.3383060482645,22.7466764014205,21.819386391085,0,0.292780797011547,0,2.55457055208591,3.59445373517761,4.79922184794726,3.30382590389968,0.299581278809645,0.457500602818626,0.376963056338593,0.347648640384553,0.511430914660661,0.20778804455956,0,0.101839363850316,17.2925689148029,0.505445516867349,2.10441855886474,0.130120442962704,0,0,1.65775299619287,0.136072998302656,0,0.187403449119458,0.517406741478031,0,0,0,1.09597866213787,0.556094498451196,0.348252166522167,0.411564272815887,0.59710280045548,4.91549231119264,3.3455227924913,3.40996199274711,0.414251545071004,1.40715635988658,0,0.23674473558521,0.196764231747404,0,0,0,0.350296027101508,0,0.492502392237286,0.162137619091711,0.438599962275997,1.3173006917463,0.939444931322602,0.420579897128254,0,2.97376904685418,0,0.213288250535234,0.928946687441754,0.644337306610467,0.403367049246685,0.444756087689741,0.760902504450237,1.42358718463353,0.164698954724011,0.251335208800269,0.397912944082302,0.58489226135736,3.59527763461689,1.94524244887225,0.995706366271836,0.569003702859245,1.14248512609729,1.1270773567308,0,0.387904974335251,0.561086559122548,0.379419222745544,0.738050739898011,0.627994911365499,0.370191491765402,0.296452627087149,22.8577794831049,21.6214894624523,36.2028000939615,46.6578279193557,44.8589517139495,40.7401362850272,30.7834867072367,13.4572238223279,19.7684217495419,8.62609239164127,4.83783231969054,3.12037673114561,1.51547326768267,0.179397413521912,2.41221760681684,6.46636165583116,0.947457058852424,0.162964976442026,0,0.234690248288502,0.670025029767263,0.476087281772027,1.17080188714679,1.7339865851681,1.10732344824387,2.71073106717728,3.11340297959902,3.7990696010497,3.03763023021174,15.0791283939272,40.7929262864032,3.93411418415229,1.65562047782839,0,0,0,0.757412781613119,0,0,0,0,0,0,0,0,0,0,0.709700426041343,1.78065603667255,0.162886959353576,2.47455184458803,1.32745138339963,1.21390318077491,0.302323556964751,0.565815239267694,0.885905678642318,1.22974059177571,1.03371317267288,0,0.712994756769443,0.632073515871632,2.10837217149998,0,0.340439605753788,0.18006109403131,0.258717367565509,0.643011105094777,0,0,0.493647061806363,0,3.28540391289194,0.63549621259146,0,1.31909002353184,0.322928853391811,0.482503399425247,0.477489376012546,0.492422699235184,2.62332752966866,0.18542530201051,49.894297192973,12.1768252098301,28.890346269675,44.0782189390977,53.4474430389208,61.5413285925546,3.0596117398894,4.19854356970974,6.08079884739465,1.90934123603023,0.632671987162271,0.609958401380546,0.648032044930808,0.418176592028937,0.655087691238533,0.674321731924103,1.40510874733071,1.30877970992015,0.777689839750757,6.21339313086926,0.56369293868419,0.448549638131936,0.992750942742586,0.583353565032143,1.42075805825504,0.506868376472335,0.58678619322877,0.781226309063701,0.104859344425711,0,0,13.9044893076398,7.70355818102624,6.05994647272481,9.09445760844565,10.9206284357164,11.1261558677508,13.7022812452764,10.7813354837441,9.59181274507402,9.37343721856498,10.1834446988209,15.2034293954014,17.1257078119786,19.7521964686852,0.680191150845634,0,0,0,0.965947970160952,4.50437941082837,1.28206136987086,0,1.00314420807073,0,0,0,0.343706364687375,0.685082519770642,0,0.675022500231806,0,0,0,0.103787347584177,0.798049746802062,1.70733605754134,8.50873509739029,10.2710449687711,2.75765262675021,2.22246727801615,3.5025959730612,2.56735367673452,3.28506375292937,2.02783439912192,4.14977951049368,3.46473577638565,3.45735822986294,3.10151532360312,5.71552429539688,2.89710814862139,3.47236596834669,4.12085900803307,1.76638704161277,5.14303878578123,4.08194354166476,2.38436189947321,3.19762116591123,2.91739079287525,3.46919892355874,3.47563148458268,1.31534855718921,1.7654534799962,3.36685362994643,3.203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| |||
|short_description=p2@Rps6ka1 | |||
}} |
Revision as of 04:02, 14 September 2013
Short description: | p2@Rps6ka1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Rps6ka1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000137486_5end |
EntrezGene: | Rps6ka1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 1.69e-14 | 32 |
hematopoietic oligopotent progenitor cell | 1.69e-14 | 32 |
hematopoietic stem cell | 1.69e-14 | 32 |
hematopoietic multipotent progenitor cell | 1.69e-14 | 32 |
hematopoietic lineage restricted progenitor cell | 4.25e-14 | 25 |
leukocyte | 1.71e-09 | 17 |
nongranular leukocyte | 1.71e-09 | 17 |
connective tissue cell | 3.73e-09 | 46 |
mesenchymal cell | 3.73e-09 | 46 |
lymphoid lineage restricted progenitor cell | 1.39e-08 | 12 |
common myeloid progenitor | 3.15e-08 | 19 |
T cell | 3.27e-08 | 11 |
pro-T cell | 3.27e-08 | 11 |
mature alpha-beta T cell | 1.11e-07 | 9 |
alpha-beta T cell | 1.11e-07 | 9 |
immature T cell | 1.11e-07 | 9 |
mature T cell | 1.11e-07 | 9 |
immature alpha-beta T cell | 1.11e-07 | 9 |
myeloid cell | 1.54e-07 | 16 |
lymphocyte | 1.67e-07 | 13 |
common lymphoid progenitor | 1.67e-07 | 13 |
CD4-positive, alpha-beta T cell | 3.70e-07 | 8 |
myeloid lineage restricted progenitor cell | 6.60e-07 | 13 |
motile cell | 7.39e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 8.32e-24 | 48 |
immune system | 8.32e-24 | 48 |
hematopoietic system | 2.73e-22 | 45 |
blood island | 2.73e-22 | 45 |
hemopoietic organ | 2.93e-13 | 29 |
immune organ | 2.93e-13 | 29 |
bone element | 6.17e-10 | 22 |
skeletal element | 6.17e-10 | 22 |
skeletal system | 6.17e-10 | 22 |
mixed endoderm/mesoderm-derived structure | 9.31e-10 | 35 |
bone marrow | 1.02e-09 | 16 |
gland of gut | 1.33e-09 | 24 |
thymus | 3.10e-09 | 23 |
neck | 3.10e-09 | 23 |
respiratory system epithelium | 3.10e-09 | 23 |
hemolymphoid system gland | 3.10e-09 | 23 |
pharyngeal epithelium | 3.10e-09 | 23 |
thymic region | 3.10e-09 | 23 |
pharyngeal gland | 3.10e-09 | 23 |
entire pharyngeal arch endoderm | 3.10e-09 | 23 |
thymus primordium | 3.10e-09 | 23 |
early pharyngeal endoderm | 3.10e-09 | 23 |
connective tissue | 3.73e-09 | 46 |
pharynx | 1.72e-08 | 24 |
upper respiratory tract | 1.72e-08 | 24 |
chordate pharynx | 1.72e-08 | 24 |
pharyngeal arch system | 1.72e-08 | 24 |
pharyngeal region of foregut | 1.72e-08 | 24 |
lateral plate mesoderm | 3.49e-08 | 87 |
foregut | 3.85e-08 | 80 |
gland | 5.45e-08 | 65 |
endocrine gland | 9.79e-08 | 60 |
musculoskeletal system | 3.50e-07 | 32 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.