FFCP PHASE1:Hg19::chrX:43576227..43576231,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C528|description=CAGE_peak_at_chrX:43576227..43576231,+|id=chrX:43576227..43576231,+|ontology_enrichment_celltype=CL:0000066!6.14e-18!254;CL:0002076!4.95e-17!43;CL:0002159!5.64e-16!13;CL:0002368!2.17e-14!13;CL:0002166!1.22e-11!3;CL:0002621!1.66e-11!3;CL:0000223!2.70e-11!59;CL:0000240!3.82e-09!6;CL:0000311!3.82e-09!6;CL:0000079!3.82e-09!6;CL:0000237!3.82e-09!6;CL:0000036!3.82e-09!6;CL:0000357!3.82e-09!6;CL:0000114!3.82e-09!6;CL:0002327!1.42e-08!4;CL:0000362!4.03e-07!8;CL:0000076!6.91e-07!62;CL:0000312!8.09e-07!5;CL:0002077!8.23e-07!33|ontology_enrichment_celltype_v019=CL:0002159;3.64e-30;14!CL:0002166;7.13e-28;3!CL:0002621;1.60e-27;3!CL:0002327;2.16e-20;4!CL:0000312;3.36e-16;5!CL:0000362;1.18e-15;9!CL:0000240;1.34e-13;6!CL:0000311;1.34e-13;6!CL:0000079;1.34e-13;6!CL:0000237;1.34e-13;6!CL:0002077;5.54e-11;34|ontology_enrichment_celltype_v019_2=CL:0002159,3.72e-30,14;CL:0002166,7.14e-28,3;CL:0002621,1.60e-27,3;CL:0002327,1.96e-20,4;CL:0000312,3.36e-16,5;CL:0000362,1.20e-15,9;CL:0000240,1.34e-13,6;CL:0000311,1.34e-13,6;CL:0000079,1.34e-13,6;CL:0000237,1.34e-13,6;CL:0000036,1.34e-13,6;CL:0000357,1.34e-13,6;CL:0000114,1.34e-13,6;CL:0002077,5.30e-12,34;CL:0000066,3.70e-08,253|ontology_enrichment_development_v019=CL:0000357;1.34e-13;6!CL:0000114;1.34e-13;6!UBERON:0003124;3.25e-10;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3111;8.24e-10;1!DOID:3603;8.24e-10;1|ontology_enrichment_disease_v019_2=DOID:3111,6.33e-10,1;DOID:3603,6.33e-10,1|ontology_enrichment_uberon=UBERON:0005631!1.61e-13!14;UBERON:0000158!1.61e-13!14;UBERON:0001949!1.66e-11!3;UBERON:0003124!1.91e-11!7;UBERON:0001708!8.18e-09!4;UBERON:0001704!8.18e-09!4;UBERON:0001911!1.42e-08!4;UBERON:0005333!1.42e-08!4;UBERON:0008425!1.42e-08!4;UBERON:0005311!1.42e-08!4;UBERON:0001987!5.44e-08!4;UBERON:0004340!5.44e-08!4;UBERON:0000478!2.58e-07!24|ontology_enrichment_uberon_v019=UBERON:0001949;1.60e-27;3!UBERON:0001708;4.53e-21;4!UBERON:0008895;4.53e-21;4!UBERON:0001911;2.16e-20;4!UBERON:0011159;5.59e-17;5!UBERON:0010371;2.81e-13;31!UBERON:0003929;3.86e-12;7!UBERON:0003350;1.10e-10;8!UBERON:0001828;1.10e-10;8!UBERON:0001003;1.79e-09;15!UBERON:0007376;1.79e-09;15!UBERON:0011137;5.40e-08;11!UBERON:0010323;5.40e-08;11!UBERON:0000486;2.79e-07;12!UBERON:0000344;2.85e-07;20!UBERON:0003729;9.40e-07;13|ontology_enrichment_uberon_v019_2=UBERON:0001949,1.60e-27,3;UBERON:0001708,4.53e-21,4;UBERON:0008895,4.53e-21,4;UBERON:0001911,1.96e-20,4;UBERON:0005333,1.96e-20,4;UBERON:0008425,1.96e-20,4;UBERON:0005311,1.96e-20,4;UBERON:0011159,5.59e-17,5;UBERON:0010188,3.03e-14,6;UBERON:0002539,3.03e-14,6;UBERON:0008816,3.03e-14,6;UBERON:0003350,1.10e-10,8;UBERON:0001828,1.10e-10,8;UBERON:0000076,1.67e-10,8;UBERON:0001003,1.81e-09,15;UBERON:0007376,1.81e-09,15;UBERON:0007383,1.81e-09,15;UBERON:0010323,5.40e-08,11;UBERON:0003102,2.09e-07,99;UBERON:0000344,2.71e-07,20;UBERON:0010371,7.97e-07,104;UBERON:0003729,9.40e-07,13|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0.245733936501509,0,0,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6024118375565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.44499962275583,4.36393792945335,4.01526433544605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,2.96325770603289,1.1240175325762,3.21692711717219,0.185176890317059,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,8.43604505880993,8.23112428174412,6.09632918142262,2.86587272649115,3.48760726216754,3.06706143332169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.33953315142039,0,0,2.29706215198469,0,0,0,0,0,0,0,0,0,0,0.495854746082934,0.192190067365106,1.65896526242959,0.4046311234222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0,1.08890984861323,1.22386941009813,0,0,0,0.918893600827838,0,0,0,0,0,0,0,0,0.106824071127473,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,0,0.614321404198464,0,0,0,0,0,0,0,0,0,0,0,0.359473404589307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5950057986596,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.60129367765797,0.103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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C528 | |||
|description=CAGE_peak_at_chrX:43576227..43576231,+ | |||
|id=chrX:43576227..43576231,+ | |||
|ontology_enrichment_celltype=CL:0000066!6.14e-18!254;CL:0002076!4.95e-17!43;CL:0002159!5.64e-16!13;CL:0002368!2.17e-14!13;CL:0002166!1.22e-11!3;CL:0002621!1.66e-11!3;CL:0000223!2.70e-11!59;CL:0000240!3.82e-09!6;CL:0000311!3.82e-09!6;CL:0000079!3.82e-09!6;CL:0000237!3.82e-09!6;CL:0000036!3.82e-09!6;CL:0000357!3.82e-09!6;CL:0000114!3.82e-09!6;CL:0002327!1.42e-08!4;CL:0000362!4.03e-07!8;CL:0000076!6.91e-07!62;CL:0000312!8.09e-07!5;CL:0002077!8.23e-07!33 | |||
|ontology_enrichment_celltype_v019=CL:0002159;3.64e-30;14!CL:0002166;7.13e-28;3!CL:0002621;1.60e-27;3!CL:0002327;2.16e-20;4!CL:0000312;3.36e-16;5!CL:0000362;1.18e-15;9!CL:0000240;1.34e-13;6!CL:0000311;1.34e-13;6!CL:0000079;1.34e-13;6!CL:0000237;1.34e-13;6!CL:0002077;5.54e-11;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0002159,3.72e-30,14;CL:0002166,7.14e-28,3;CL:0002621,1.60e-27,3;CL:0002327,1.96e-20,4;CL:0000312,3.36e-16,5;CL:0000362,1.20e-15,9;CL:0000240,1.34e-13,6;CL:0000311,1.34e-13,6;CL:0000079,1.34e-13,6;CL:0000237,1.34e-13,6;CL:0000036,1.34e-13,6;CL:0000357,1.34e-13,6;CL:0000114,1.34e-13,6;CL:0002077,5.30e-12,34;CL:0000066,3.70e-08,253 | |||
|ontology_enrichment_development_v019=CL:0000357;1.34e-13;6!CL:0000114;1.34e-13;6!UBERON:0003124;3.25e-10;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3111;8.24e-10;1!DOID:3603;8.24e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3111,6.33e-10,1;DOID:3603,6.33e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0005631!1.61e-13!14;UBERON:0000158!1.61e-13!14;UBERON:0001949!1.66e-11!3;UBERON:0003124!1.91e-11!7;UBERON:0001708!8.18e-09!4;UBERON:0001704!8.18e-09!4;UBERON:0001911!1.42e-08!4;UBERON:0005333!1.42e-08!4;UBERON:0008425!1.42e-08!4;UBERON:0005311!1.42e-08!4;UBERON:0001987!5.44e-08!4;UBERON:0004340!5.44e-08!4;UBERON:0000478!2.58e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;1.60e-27;3!UBERON:0001708;4.53e-21;4!UBERON:0008895;4.53e-21;4!UBERON:0001911;2.16e-20;4!UBERON:0011159;5.59e-17;5!UBERON:0010371;2.81e-13;31!UBERON:0003929;3.86e-12;7!UBERON:0003350;1.10e-10;8!UBERON:0001828;1.10e-10;8!UBERON:0001003;1.79e-09;15!UBERON:0007376;1.79e-09;15!UBERON:0011137;5.40e-08;11!UBERON:0010323;5.40e-08;11!UBERON:0000486;2.79e-07;12!UBERON:0000344;2.85e-07;20!UBERON:0003729;9.40e-07;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,1.60e-27,3;UBERON:0001708,4.53e-21,4;UBERON:0008895,4.53e-21,4;UBERON:0001911,1.96e-20,4;UBERON:0005333,1.96e-20,4;UBERON:0008425,1.96e-20,4;UBERON:0005311,1.96e-20,4;UBERON:0011159,5.59e-17,5;UBERON:0010188,3.03e-14,6;UBERON:0002539,3.03e-14,6;UBERON:0008816,3.03e-14,6;UBERON:0003350,1.10e-10,8;UBERON:0001828,1.10e-10,8;UBERON:0000076,1.67e-10,8;UBERON:0001003,1.81e-09,15;UBERON:0007376,1.81e-09,15;UBERON:0007383,1.81e-09,15;UBERON:0010323,5.40e-08,11;UBERON:0003102,2.09e-07,99;UBERON:0000344,2.71e-07,20;UBERON:0010371,7.97e-07,104;UBERON:0003729,9.40e-07,13 | |||
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|short_description=p@chrX:43576227..43576231,+ | |||
}} |
Revision as of 11:54, 14 September 2013
Short description: | p@chrX:43576227..43576231, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chrX:43576227..43576231, + |
Coexpression cluster: | C528_Gingival_Mallassezderived_Keratinocyte_Sebocyte_Prostate_Urothelial_Small |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
general ecto-epithelial cell | 3.72e-30 | 14 |
epithelial cell of Malassez | 7.14e-28 | 3 |
gingival epithelial cell | 1.60e-27 | 3 |
mammary gland epithelial cell | 1.96e-20 | 4 |
keratinocyte | 3.36e-16 | 5 |
epidermal cell | 1.20e-15 | 9 |
stratified squamous epithelial cell | 1.34e-13 | 6 |
keratin accumulating cell | 1.34e-13 | 6 |
stratified epithelial cell | 1.34e-13 | 6 |
keratinizing barrier epithelial cell | 1.34e-13 | 6 |
epithelial fate stem cell | 1.34e-13 | 6 |
stratified epithelial stem cell | 1.34e-13 | 6 |
surface ectodermal cell | 1.34e-13 | 6 |
ecto-epithelial cell | 5.30e-12 | 34 |
epithelial cell | 3.70e-08 | 253 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 1.60e-27 | 3 |
jaw skeleton | 4.53e-21 | 4 |
splanchnocranium | 4.53e-21 | 4 |
mammary gland | 1.96e-20 | 4 |
mammary bud | 1.96e-20 | 4 |
mammary ridge | 1.96e-20 | 4 |
mammary placode | 1.96e-20 | 4 |
primary subdivision of cranial skeletal system | 5.59e-17 | 5 |
protuberance | 3.03e-14 | 6 |
pharyngeal arch | 3.03e-14 | 6 |
embryonic head | 3.03e-14 | 6 |
epithelium of mucosa | 1.10e-10 | 8 |
gingiva | 1.10e-10 | 8 |
external ectoderm | 1.67e-10 | 8 |
skin epidermis | 1.81e-09 | 15 |
outer epithelium | 1.81e-09 | 15 |
enveloping layer of ectoderm | 1.81e-09 | 15 |
cranial skeletal system | 5.40e-08 | 11 |
surface structure | 2.09e-07 | 99 |
mucosa | 2.71e-07 | 20 |
ecto-epithelium | 7.97e-07 | 104 |
mouth mucosa | 9.40e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
cystadenocarcinoma | 6.33e-10 | 1 |
mucinous cystadenocarcinoma | 6.33e-10 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.