MCL coexpression mm9:29: Difference between revisions
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{{MCL_coexpression_mm9| | {{MCL_coexpression_mm9|coexpression_dpi_cluster_scores_mean=0.00786179883710349,0.00600538911480915,0.00823820337141753,0.00948023338243617,0.0103160775951074,0.00782083000676464,0.00814847033051329,0.941213128271285,0.176588562013092,0.207002539148151,0.088625985114575,0.0844169139362927,0.298245701068162,0.332652215869701,0.0189703859850944,0.0338312625747884,0.0131610949786081,0.0766080181972572,0.0736552938523269,0.0617063614948651,0.019095878769835,0.028324713144739,0.0273163963086265,0.0239583815341212,0.0237102244493993,0.00631025018247104,0.0060018753051771,0.0068519553365514,0.0125178760403985,0.0146379876747278,0.0159411588288951,0.00779492294172883,0.00300043828946861,-0.000261006090533915,0.00658212715941671,0.00480772781524897,0.00814437439586977,0.0161429152422238,0.0144255535606911,0.0115817031925155,0.0406415475353485,0.0196934844204388,0.0120424081272088,0.00482573344230386,0.00421192800497863,0.00620104711889951,0.00180387157546365,0.00241698786979652,0.000691554307992923,0.00242517298443811,0.00100342140235154,-0.00210628849422563,0.0717100926621948,0.301648206872662,0.227066411298137,0.00406375189285028,0.0039966209735168,0.00351882009667979,0.00128703508313716,0.000559805496106717,0.00344781294553431,0.00275560899393183,-0.00174222198133104,0.00334897927922518,0.00382114025410442,0.000780520815177044,0.00076230556692727,0.00300659603492721,0.000473087793913017,0.000826928855796843,0.000405014063282419,0.00157405714035303,0.00547393171125765,0.00119168867766317,0.00136009582748655,0.00301706544627774,0.00360227712495877,0.00594313806744075,0.00484072171260456,0.000872858521672033,0.00227217704633063,0.000743132864254928,0.00333531658840893,0.00837140989402586,0.00829980336695929,0.0047449054304398,0.00482522192414111,0.000755018198566421,0.0100384964449156,0.00409710210606734,0.0364856466813442,0.0067172689466707,0.00165341466707165,0.000787375165560602,0.0032122427403938,0.0049681457952476,0.0149153437782526,0.00680336431600304,0.00563153677018448,0.00358368484477141,0.00270260718899736,0.00500973114488613,0.000310774115128683,-0.000357929100365698,0.0069120067834433,0.00554826377508222,0.00459011500587227,0.0237754803445181,0.12523369991323,0.0150791645874763,0.00422640239902346,0.00683059265660724,0.00568471322224082,0.00535347550514327,0.00786026204573807,0.00577300117754138,0.0108813832334992,0.0121623551725957,0.0107383821350078,0.00222148934981552,0.00551842442679659,0.0114835777153353,0.00656051875979985,0.00424784307684544,0.00733386350951441,0.0211313660027706,0.0290985337000187,0.0231742865258075,0.0247759523457885,0.00617313642389152,0.00996890911536484,0.00308852741095256,0.00920771945258916,0.00774250285805659,0.00573479115606884,0.00898188304223283,0.00452198414941356,0.0120056574256621,0.00571368827928535,0.00501577065797533,0.00413528907155395,0.0020735787971947,0.00368224379686322,0.00600171640980922,0.00467153200016421,0.00545566335293918,0.00346278476121259,0.00555654085270459,0.00197396067228964,0.00287541632099398,0.00465011725561582,0.00370961701010352,0.0048814599234811,0.00664807193416961,0.00625470823406212,0.00339749058501436,0.0119154656797318,0.0169752155300472,0.0138769735027392,0.00260922874241705,0.00210978032904868,0.00348801125042185,0.00185008286463843,0.00447191109500214,0.00421405672422164,0.00227804687822067,0.00398566512007481,0.00472477403355862,0.00209254593403605,0.00397079042561613,0.00382554728490247,0.00377357490252978,0.00353682440985235,0.0064603851001091,0.00852926556395989,0.00284784532703304,0.027078704918896,0.0114152419584792,0.00243761579383262,0.00276596562917546,0.00275251750314642,0.00338363566270408,0.00535051129593642,0.0049980284520568,0.0113407523491965,0.00422171614539085,0.00917040226726771,0.00766810699635204,0.00745211100584673,0.0062758100493617,0.0113192170522962,0.0150964370254692,0.00104403795618963,0.00307927685910233,0.00169576630593098,0.0029558696135932,0.004946263396719,0.00404708961721929,0.00399539733609646,0.00453643778153789,0.00390497945274373,0.00533822877946678,0.00535350268732282,0.000326718530604497,0.00141887447726182,0.0008641899952542,0.00111941127248755,0.000579072120962134,0.00274446681626557,0.00411510702934213,0.00630414641493657,0.00541346317565978,0.012523413134916,0.013472007318031,0.00811494563243691,0.00558467903525571,0.00542451093734742,0.00702699740350434,0.0310842991914111,0.00160139699065725,0.00108394355192238,0.00320491239858819,0.00323578336134546,0.0078611339226416,0.00379901656954238,0.00775746973779322,0.0132064658544785,0.0144175510084419,0.0133808065304658,0.0275315031611305,0.0248715321222312,0.022213206091238,0.00275830019445018,0.0034856402208032,0.0149153916664856,0.0169567063125253,0.00566656581338665,0.00324533852136851,0.00225127420456577,0.00492258214827988,0.00673333751970282,0.00533285295323334,0.00935029092000305,0.00439910842948975,0.00582017048877124,0.00645106381837662,0.00619762537112198,0.00663341082701726,0.00570722951612428,0.0048058488196018,0.0127448950875901,0.0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regulation of chronic inflammatory response;0.0256756253844629;20371!GO:0002849;regulation of peripheral T cell tolerance induction;0.0256756253844629;20371!GO:0031058;positive regulation of histone modification;0.0256756253844629;20371!GO:0002465;peripheral tolerance induction;0.0256756253844629;20371!GO:0002851;positive regulation of peripheral T cell tolerance induction;0.0256756253844629;20371!GO:0032714;negative regulation of interleukin-5 production;0.0256756253844629;20371!GO:0002660;positive regulation of peripheral tolerance induction;0.0256756253844629;20371!GO:0002667;regulation of T cell anergy;0.0256756253844629;20371!GO:0002911;regulation of lymphocyte anergy;0.0256756253844629;20371!GO:0032713;negative regulation of interleukin-4 production;0.0256756253844629;20371!GO:0032914;positive regulation of transforming growth factor-beta1 production;0.0256756253844629;20371!GO:0002652;regulation of tolerance induction dependent upon immune response;0.0256756253844629;20371!GO:0002676;regulation of chronic inflammatory response;0.0256756253844629;20371!GO:0002658;regulation of peripheral tolerance induction;0.0256756253844629;20371!GO:0002249;lymphocyte anergy;0.0256756253844629;20371!GO:0002669;positive regulation of T cell anergy;0.0256756253844629;20371!GO:0032693;negative regulation of interleukin-10 production;0.0256756253844629;20371!GO:0032674;regulation of interleukin-5 production;0.0256756253844629;20371!GO:0002913;positive regulation of lymphocyte anergy;0.0256756253844629;20371!GO:0002461;tolerance induction dependent upon immune response;0.0256756253844629;20371!GO:0032908;regulation of transforming growth factor-beta1 production;0.0256756253844629;20371!GO:0002654;positive regulation of tolerance induction dependent upon immune response;0.0256756253844629;20371!GO:0035066;positive regulation of histone acetylation;0.0256756253844629;20371!GO:0002458;peripheral T cell tolerance induction;0.0256756253844629;20371!GO:0047395;glycerophosphoinositol glycerophosphodiesterase activity;0.0256756253844629;!GO:0002870;T cell anergy;0.0256756253844629;20371!GO:0032905;transforming growth factor-beta1 production;0.0256756253844629;20371!GO:0005231;excitatory extracellular ligand-gated ion channel activity;0.0256756253844629;14804,18439!GO:0048583;regulation of response to stimulus;0.0256756253844629;14804,20371!GO:0002666;positive regulation of T cell tolerance induction;0.0256756253844629;20371!GO:0032653;regulation of interleukin-10 production;0.0256756253844629;20371!GO:0002643;regulation of tolerance induction;0.0256756253844629;20371!GO:0032689;negative regulation of interferon-gamma production;0.0256756253844629;20371!GO:0016316;phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity;0.0256756253844629;234515!GO:0045591;positive regulation of regulatory T cell differentiation;0.0256756253844629;20371!GO:0032720;negative regulation of tumor necrosis factor production;0.0256756253844629;20371!GO:0002637;regulation of immunoglobulin production;0.0256756253844629;20371!GO:0002361;CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation;0.0256756253844629;20371!GO:0045589;regulation of regulatory T cell differentiation;0.0256756253844629;20371!GO:0035067;negative regulation of histone acetylation;0.0256756253844629;20371!GO:0048294;negative regulation of isotype switching to IgE isotypes;0.0256756253844629;20371!GO:0002664;regulation of T cell tolerance induction;0.0256756253844629;20371!GO:0032634;interleukin-5 production;0.0256756253844629;20371!GO:0032663;regulation of interleukin-2 production;0.0256756253844629;20371!GO:0004911;interleukin-2 receptor activity;0.0256756253844629;16185!GO:0033091;positive regulation of immature T cell proliferation;0.0256756253844629;20371!GO:0045077;negative regulation of interferon-gamma biosynthetic process;0.0256756253844629;20371!GO:0048016;inositol phosphate-mediated signaling;0.0256756253844629;234515!GO:0002517;T cell tolerance induction;0.0256756253844629;20371!GO:0033092;positive regulation of immature T cell proliferation in the thymus;0.0256756253844629;20371!GO:0032673;regulation of interleukin-4 production;0.0256756253844629;20371!GO:0032715;negative regulation of interleukin-6 production;0.0256756253844629;20371!GO:0032703;negative regulation of interleukin-2 production;0.0256756253844629;20371!GO:0002645;positive regulation of tolerance induction;0.0256756253844629;20371!GO:0035065;regulation of histone acetylation;0.0256756253844629;20371!GO:0002544;chronic inflammatory response;0.0256756253844629;20371!GO:0032831;positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation;0.0256756253844629;20371!GO:0045829;negative regulation of isotype switching;0.0256756253844629;20371!GO:0008081;phosphoric diester hydrolase activity;0.0322156891114012;18803!GO:0005230;extracellular ligand-gated ion channel activity;0.0322156891114012;14804,18439!GO:0019976;interleukin-2 binding;0.0328281036969118;16185!GO:0002711;positive regulation of T cell mediated immunity;0.0328281036969118;20371!GO:0031057;negative regulation of histone modification;0.0328281036969118;20371!GO:0045066;regulatory T cell differentiation;0.0328281036969118;20371!GO:0046875;ephrin receptor binding;0.0328281036969118;21844!GO:0002513;tolerance induction to self antigen;0.0328281036969118;20371!GO:0045085;negative regulation of interleukin-2 biosynthetic process;0.0328281036969118;20371!GO:0051054;positive regulation of DNA metabolic process;0.0328281036969118;20371!GO:0033079;immature T cell proliferation;0.0362738850060693;20371!GO:0002700;regulation of production of molecular mediator of immune response;0.0362738850060693;20371!GO:0033083;regulation of immature T cell proliferation;0.0362738850060693;20371!GO:0048293;regulation of isotype switching to IgE isotypes;0.0362738850060693;20371!GO:0045779;negative regulation of bone resorption;0.0362738850060693;18439!GO:0033084;regulation of immature T cell proliferation in the thymus;0.0362738850060693;20371!GO:0031056;regulation of histone modification;0.0362738850060693;20371!GO:0048013;ephrin receptor signaling pathway;0.0362738850060693;21844!GO:0008517;folic acid transporter activity;0.0362738850060693;64931!GO:0002507;tolerance induction;0.0362738850060693;20371!GO:0002709;regulation of T cell mediated immunity;0.0362738850060693;20371!GO:0048289;isotype switching to IgE isotypes;0.0362738850060693;20371!GO:0033080;immature T cell proliferation in the thymus;0.0362738850060693;20371!GO:0030501;positive regulation of bone mineralization;0.0362738850060693;18439!GO:0022834;ligand-gated channel activity;0.0370850026866167;14804,18439!GO:0015276;ligand-gated ion channel activity;0.0370850026866167;14804,18439!GO:0042578;phosphoric ester hydrolase activity;0.0422230688784629;234515,18803!GO:0032633;interleukin-4 production;0.0422230688784629;20371!GO:0060134;prepulse inhibition;0.0422230688784629;14804!GO:0032613;interleukin-10 production;0.0422230688784629;20371!GO:0001816;cytokine production;0.0464148620209265;20371,225825!GO:0004931;ATP-gated cation channel activity;0.0464148620209265;18439!GO:0045885;positive regulation of survival gene product activity;0.0464148620209265;16185!GO:0003704;specific RNA polymerase II transcription factor activity;0.0464148620209265;20371!GO:0045124;regulation of bone resorption;0.0464148620209265;18439!GO:0051130;positive regulation of cellular component organization and biogenesis;0.0464148620209265;20371!GO:0045072;regulation of interferon-gamma biosynthetic process;0.0464148620209265;20371!GO:0045778;positive regulation of ossification;0.0464148620209265;18439!|ontology_enrichment_celltype=CL:0000791!4.97e-77!9;CL:0000789!4.97e-77!9;CL:0002420!4.97e-77!9;CL:0002419!4.97e-77!9;CL:0000790!4.97e-77!9;CL:0000624!1.79e-66!8;CL:0000084!4.29e-63!11;CL:0000827!4.29e-63!11;CL:0000838!7.26e-58!12;CL:0000542!1.94e-53!13;CL:0000051!1.94e-53!13;CL:0000893!5.21e-45!6;CL:0002489!5.21e-45!6;CL:0000898!5.21e-45!6;CL:0000809!5.21e-45!6;CL:0000810!5.21e-45!6;CL:0000895!5.21e-45!6;CL:0000808!5.21e-45!6;CL:0000894!5.21e-45!6;CL:0000806!5.21e-45!6;CL:0000807!5.21e-45!6;CL:0000805!5.21e-45!6;CL:0002425!5.21e-45!6;CL:0002436!5.21e-45!6;CL:0002427!5.21e-45!6;CL:0002428!5.21e-45!6;CL:0002429!5.21e-45!6;CL:0002433!5.21e-45!6;CL:0002431!5.21e-45!6;CL:0002432!5.21e-45!6;CL:0002242!1.78e-43!16;CL:0000738!6.20e-41!17;CL:0002087!6.20e-41!17;CL:0002031!6.66e-28!25;CL:0000988!7.89e-22!32;CL:0002032!7.89e-22!32;CL:0000037!7.89e-22!32;CL:0000566!7.89e-22!32;CL:0000837!7.89e-22!32;CL:0002320!3.33e-15!46;CL:0000134!3.33e-15!46;CL:0000219!5.97e-13!54;CL:0000815!1.20e-12!1;CL:0000792!1.20e-12!1;CL:0000625!3.34e-12!1;CL:0000723!1.22e-07!91;CL:0000048!1.22e-07!91;CL:0000034!3.71e-07!97|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0002384!3.33e-15!46;UBERON:0002370!5.20e-12!23;UBERON:0000974!5.20e-12!23;UBERON:0004807!5.20e-12!23;UBERON:0005058!5.20e-12!23;UBERON:0003351!5.20e-12!23;UBERON:0009113!5.20e-12!23;UBERON:0003295!5.20e-12!23;UBERON:0009722!5.20e-12!23;UBERON:0005562!5.20e-12!23;UBERON:0007690!5.20e-12!23;UBERON:0006562!1.61e-11!24;UBERON:0003408!1.61e-11!24;UBERON:0001557!1.61e-11!24;UBERON:0001042!1.61e-11!24;UBERON:0008814!1.61e-11!24;UBERON:0009145!1.61e-11!24;UBERON:0000072!2.90e-10!27;UBERON:0004177!1.43e-09!29;UBERON:0005057!1.43e-09!29;UBERON:0000077!5.85e-08!35;UBERON:0000063!5.85e-08!35;UBERON:0007811!9.65e-08!36;UBERON:0000065!8.19e-07!41|tfbs_overrepresentation_for_novel_motifs=0.00402127,7.81031e-06,0.00432797,2.37853,3.00167,0.427597,0.00127579,0.320194,0.242699,1.9028e-08,0.0550577,0.788987,0.0125225,0.0754268,2.10237,0,0.0565277,1.12263,2.15125e-05,0.0449254,1.5605,0.00762503,7.39864e-05,2.08386,0.0244503,0.0174092,0.0282676,0.00291427,0.000904114,0.00457792,0.186833,0.111116,0.0651452,0.0224601,1.55333e-05,1.21698e-13,2.09312e-12,0.0150174,3.13195,1.9847e-07,1.19898,0.00793018,0.0660326,3.06277,1.21793e-06,0.0123443,0.197302,0.0093444,1.46712,0.0282218,0.127423,0.43734,0.0585502,0.230937,0.0287672,0.126237,0.15909,0.000539601,0.0683706,0.018914,0.0888405,0.000193549,0.130631,0.036487,0.00324349,0.0164602,0.582981,0.537005,0.144875,0.129096,4.58004e-05,6.42352,0,1.60321,7.51693e-14,0.000351463,0.000759992,0.114337,0.302487,0.738564,2.88099,0.00727215,3.59497,1.54623,0.00250955,0,0.318166,0.000762893,0.0562329,0.433871,0.308645,0.0742405,0.62128,6.52761,3.17656e-06,0.556676,0.00361586,0.214886,0.490675,0.0120815,2.04031,1.19085,0.0521826,1.03032,0.386866,0.000159399,0.00101459,0.786458,0.000623053,3.06424e-09,0.410121,0.204843,0.044596,0.0247555,1.95401,0.846952,5.50486e-13,0.0688453,0.0575895,1.51769,0.743603,0.984681,0.653502,0.16848,0.680201,0.440201,0.0697552,0.118471,0.0952812,0.282837,1.36624,0.239721,0.309575,1.21058,0.594608,0.17276,0.968807,0.863946,0.276486,0.375268,0.394654,0.863083,5.1939,0.447984,0.976224,0.0818272,0.205085,0.345749,0.0266915,4.73781e-05,1.4171e-05,0,0.372897,0.00282864,1.02693,0.127443,2.85887,0.520162,0.298814,6.03168e-05,0.052439,0.921093,0.31387,0.0328312,1.15371,1.12613,0.00778506,2.50846,0|tfbs_overrepresentation_jaspar=MA0003.1;0,MA0004.1;0.0283851,MA0006.1;0.000717775,MA0007.1;0.0286631,MA0009.1;1.11908,MA0014.1;0,MA0017.1;1.2817,MA0019.1;0.076883,MA0024.1;0.00814829,MA0025.1;0.301358,MA0027.1;0.798982,MA0028.1;2.38989e-05,MA0029.1;0.297448,MA0030.1;0.597631,MA0031.1;0.965993,MA0038.1;0.0519578,MA0040.1;1.19908,MA0041.1;1.99957,MA0042.1;1.27422,MA0043.1;0.325263,MA0046.1;0.117538,MA0048.1;5.20803e-09,MA0050.1;4.34823,MA0051.1;0.14022,MA0052.1;0.775544,MA0055.1;7.70791e-07,MA0056.1;0,MA0057.1;2.48125e-05,MA0058.1;0.0039966,MA0059.1;5.94429e-05,MA0060.1;0.000471563,MA0061.1;3.84681,MA0063.1;0,MA0066.1;0.0418037,MA0067.1;0.158685,MA0068.1;1.11158,MA0069.1;1.00153,MA0070.1;0.545013,MA0071.1;0.594673,MA0072.1;0.90087,MA0073.1;0.973478,MA0074.1;0.0102005,MA0076.1;0.00179848,MA0077.1;0.120329,MA0078.1;1.32268,MA0081.1;1.02493,MA0083.1;0.0189794,MA0084.1;0.636144,MA0087.1;1.18989,MA0088.1;5.269e-08,MA0089.1;0,MA0090.1;0.0546892,MA0091.1;0.272027,MA0092.1;0.296086,MA0093.1;0.00911935,MA0095.1;0,MA0098.1;0,MA0100.1;0.0242771,MA0101.1;2.60688,MA0103.1;0.302457,MA0105.1;0.119599,MA0106.1;0.00272226,MA0107.1;4.90576,MA0108.2;0.747626,MA0109.1;0,MA0111.1;0.376041,MA0113.1;0.79194,MA0114.1;0.0549644,MA0115.1;0.204862,MA0116.1;0.00124532,MA0117.1;0.0833876,MA0119.1;0.463884,MA0122.1;1.12163,MA0124.1;0.415792,MA0125.1;0.663891,MA0130.1;0,MA0131.1;0.00408656,MA0132.1;0,MA0133.1;0,MA0135.1;0.0289359,MA0136.1;3.27848,MA0139.1;1.30886e-09,MA0140.1;1.95774,MA0141.1;0.263775,MA0142.1;1.07775,MA0143.1;1.28182,MA0144.1;0.982774,MA0145.1;7.14749e-08,MA0146.1;0,MA0147.1;4.58443e-09,MA0148.1;1.49507,MA0149.1;0.000137041,MA0062.2;0.000540466,MA0035.2;2.03048,MA0039.2;0,MA0138.2;0.0185734,MA0002.2;3.88102,MA0137.2;1.84047,MA0104.2;1.54519e-12,MA0047.2;0.772637,MA0112.2;2.00939e-08,MA0065.2;9.74226e-05,MA0150.1;0.209113,MA0151.1;0,MA0152.1;0.120475,MA0153.1;0.295213,MA0154.1;0.0233549,MA0155.1;0.00769097,MA0156.1;1.64095,MA0157.1;2.02983,MA0158.1;0,MA0159.1;1.09885,MA0160.1;0.0986544,MA0161.1;0,MA0162.1;0,MA0163.1;4.82164e-17,MA0164.1;0.477286,MA0080.2;4.20523,MA0018.2;0.426307,MA0099.2;0.399732,MA0079.2;0,MA0102.2;0.114115,MA0258.1;0.0831499,MA0259.1;1.62832e-06,MA0442.1;0}} |
Latest revision as of 14:32, 17 September 2013
Phase1 CAGE Peaks
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
GO ID | GO name | FDR corrected p-value |
---|---|---|
GO:0002677 | negative regulation of chronic inflammatory response | 0.0256756253844629 |
GO:0002849 | regulation of peripheral T cell tolerance induction | 0.0256756253844629 |
GO:0031058 | positive regulation of histone modification | 0.0256756253844629 |
GO:0002465 | peripheral tolerance induction | 0.0256756253844629 |
GO:0002851 | positive regulation of peripheral T cell tolerance induction | 0.0256756253844629 |
GO:0032714 | negative regulation of interleukin-5 production | 0.0256756253844629 |
GO:0002660 | positive regulation of peripheral tolerance induction | 0.0256756253844629 |
GO:0002667 | regulation of T cell anergy | 0.0256756253844629 |
GO:0002911 | regulation of lymphocyte anergy | 0.0256756253844629 |
GO:0032713 | negative regulation of interleukin-4 production | 0.0256756253844629 |
GO:0032914 | positive regulation of transforming growth factor-beta1 production | 0.0256756253844629 |
GO:0002652 | regulation of tolerance induction dependent upon immune response | 0.0256756253844629 |
GO:0002676 | regulation of chronic inflammatory response | 0.0256756253844629 |
GO:0002658 | regulation of peripheral tolerance induction | 0.0256756253844629 |
GO:0002249 | lymphocyte anergy | 0.0256756253844629 |
GO:0002669 | positive regulation of T cell anergy | 0.0256756253844629 |
GO:0032693 | negative regulation of interleukin-10 production | 0.0256756253844629 |
GO:0032674 | regulation of interleukin-5 production | 0.0256756253844629 |
GO:0002913 | positive regulation of lymphocyte anergy | 0.0256756253844629 |
GO:0002461 | tolerance induction dependent upon immune response | 0.0256756253844629 |
GO:0032908 | regulation of transforming growth factor-beta1 production | 0.0256756253844629 |
GO:0002654 | positive regulation of tolerance induction dependent upon immune response | 0.0256756253844629 |
GO:0035066 | positive regulation of histone acetylation | 0.0256756253844629 |
GO:0002458 | peripheral T cell tolerance induction | 0.0256756253844629 |
GO:0047395 | glycerophosphoinositol glycerophosphodiesterase activity | 0.0256756253844629 |
GO:0002870 | T cell anergy | 0.0256756253844629 |
GO:0032905 | transforming growth factor-beta1 production | 0.0256756253844629 |
GO:0005231 | excitatory extracellular ligand-gated ion channel activity | 0.0256756253844629 |
GO:0048583 | regulation of response to stimulus | 0.0256756253844629 |
GO:0002666 | positive regulation of T cell tolerance induction | 0.0256756253844629 |
GO:0032653 | regulation of interleukin-10 production | 0.0256756253844629 |
GO:0002643 | regulation of tolerance induction | 0.0256756253844629 |
GO:0032689 | negative regulation of interferon-gamma production | 0.0256756253844629 |
GO:0016316 | phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity | 0.0256756253844629 |
GO:0045591 | positive regulation of regulatory T cell differentiation | 0.0256756253844629 |
GO:0032720 | negative regulation of tumor necrosis factor production | 0.0256756253844629 |
GO:0002637 | regulation of immunoglobulin production | 0.0256756253844629 |
GO:0002361 | CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation | 0.0256756253844629 |
GO:0045589 | regulation of regulatory T cell differentiation | 0.0256756253844629 |
GO:0035067 | negative regulation of histone acetylation | 0.0256756253844629 |
GO:0048294 | negative regulation of isotype switching to IgE isotypes | 0.0256756253844629 |
GO:0002664 | regulation of T cell tolerance induction | 0.0256756253844629 |
GO:0032634 | interleukin-5 production | 0.0256756253844629 |
GO:0032663 | regulation of interleukin-2 production | 0.0256756253844629 |
GO:0004911 | interleukin-2 receptor activity | 0.0256756253844629 |
GO:0033091 | positive regulation of immature T cell proliferation | 0.0256756253844629 |
GO:0045077 | negative regulation of interferon-gamma biosynthetic process | 0.0256756253844629 |
GO:0048016 | inositol phosphate-mediated signaling | 0.0256756253844629 |
GO:0002517 | T cell tolerance induction | 0.0256756253844629 |
GO:0033092 | positive regulation of immature T cell proliferation in the thymus | 0.0256756253844629 |
GO:0032673 | regulation of interleukin-4 production | 0.0256756253844629 |
GO:0032715 | negative regulation of interleukin-6 production | 0.0256756253844629 |
GO:0032703 | negative regulation of interleukin-2 production | 0.0256756253844629 |
GO:0002645 | positive regulation of tolerance induction | 0.0256756253844629 |
GO:0035065 | regulation of histone acetylation | 0.0256756253844629 |
GO:0002544 | chronic inflammatory response | 0.0256756253844629 |
GO:0032831 | positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation | 0.0256756253844629 |
GO:0045829 | negative regulation of isotype switching | 0.0256756253844629 |
GO:0008081 | phosphoric diester hydrolase activity | 0.0322156891114012 |
GO:0005230 | extracellular ligand-gated ion channel activity | 0.0322156891114012 |
GO:0019976 | interleukin-2 binding | 0.0328281036969118 |
GO:0002711 | positive regulation of T cell mediated immunity | 0.0328281036969118 |
GO:0031057 | negative regulation of histone modification | 0.0328281036969118 |
GO:0045066 | regulatory T cell differentiation | 0.0328281036969118 |
GO:0046875 | ephrin receptor binding | 0.0328281036969118 |
GO:0002513 | tolerance induction to self antigen | 0.0328281036969118 |
GO:0045085 | negative regulation of interleukin-2 biosynthetic process | 0.0328281036969118 |
GO:0051054 | positive regulation of DNA metabolic process | 0.0328281036969118 |
GO:0033079 | immature T cell proliferation | 0.0362738850060693 |
GO:0002700 | regulation of production of molecular mediator of immune response | 0.0362738850060693 |
GO:0033083 | regulation of immature T cell proliferation | 0.0362738850060693 |
GO:0048293 | regulation of isotype switching to IgE isotypes | 0.0362738850060693 |
GO:0045779 | negative regulation of bone resorption | 0.0362738850060693 |
GO:0033084 | regulation of immature T cell proliferation in the thymus | 0.0362738850060693 |
GO:0031056 | regulation of histone modification | 0.0362738850060693 |
GO:0048013 | ephrin receptor signaling pathway | 0.0362738850060693 |
GO:0008517 | folic acid transporter activity | 0.0362738850060693 |
GO:0002507 | tolerance induction | 0.0362738850060693 |
GO:0002709 | regulation of T cell mediated immunity | 0.0362738850060693 |
GO:0048289 | isotype switching to IgE isotypes | 0.0362738850060693 |
GO:0033080 | immature T cell proliferation in the thymus | 0.0362738850060693 |
GO:0030501 | positive regulation of bone mineralization | 0.0362738850060693 |
GO:0022834 | ligand-gated channel activity | 0.0370850026866167 |
GO:0015276 | ligand-gated ion channel activity | 0.0370850026866167 |
GO:0042578 | phosphoric ester hydrolase activity | 0.0422230688784629 |
GO:0032633 | interleukin-4 production | 0.0422230688784629 |
GO:0060134 | prepulse inhibition | 0.0422230688784629 |
GO:0032613 | interleukin-10 production | 0.0422230688784629 |
GO:0001816 | cytokine production | 0.0464148620209265 |
GO:0004931 | ATP-gated cation channel activity | 0.0464148620209265 |
GO:0045885 | positive regulation of survival gene product activity | 0.0464148620209265 |
GO:0003704 | specific RNA polymerase II transcription factor activity | 0.0464148620209265 |
GO:0045124 | regulation of bone resorption | 0.0464148620209265 |
GO:0051130 | positive regulation of cellular component organization and biogenesis | 0.0464148620209265 |
GO:0045072 | regulation of interferon-gamma biosynthetic process | 0.0464148620209265 |
GO:0045778 | positive regulation of ossification | 0.0464148620209265 |
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
Ontology term | p-value | n |
---|---|---|
connective tissue | 3.33e-15 | 46 |
thymus | 5.20e-12 | 23 |
neck | 5.20e-12 | 23 |
respiratory system epithelium | 5.20e-12 | 23 |
hemolymphoid system gland | 5.20e-12 | 23 |
pharyngeal epithelium | 5.20e-12 | 23 |
thymic region | 5.20e-12 | 23 |
pharyngeal gland | 5.20e-12 | 23 |
entire pharyngeal arch endoderm | 5.20e-12 | 23 |
thymus primordium | 5.20e-12 | 23 |
early pharyngeal endoderm | 5.20e-12 | 23 |
pharynx | 1.61e-11 | 24 |
gland of gut | 1.61e-11 | 24 |
upper respiratory tract | 1.61e-11 | 24 |
chordate pharynx | 1.61e-11 | 24 |
pharyngeal arch system | 1.61e-11 | 24 |
pharyngeal region of foregut | 1.61e-11 | 24 |
segment of respiratory tract | 2.90e-10 | 27 |
hemopoietic organ | 1.43e-09 | 29 |
immune organ | 1.43e-09 | 29 |
mixed endoderm/mesoderm-derived structure | 5.85e-08 | 35 |
organ segment | 5.85e-08 | 35 |
craniocervical region | 9.65e-08 | 36 |
respiratory tract | 8.19e-07 | 41 |
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
MA0003.1 | 0 |
MA0004.1 | 0.0283851 |
MA0006.1 | 0.000717775 |
MA0007.1 | 0.0286631 |
MA0009.1 | 1.11908 |
MA0014.1 | 0 |
MA0017.1 | 1.2817 |
MA0019.1 | 0.076883 |
MA0024.1 | 0.00814829 |
MA0025.1 | 0.301358 |
MA0027.1 | 0.798982 |
MA0028.1 | 2.38989e-05 |
MA0029.1 | 0.297448 |
MA0030.1 | 0.597631 |
MA0031.1 | 0.965993 |
MA0038.1 | 0.0519578 |
MA0040.1 | 1.19908 |
MA0041.1 | 1.99957 |
MA0042.1 | 1.27422 |
MA0043.1 | 0.325263 |
MA0046.1 | 0.117538 |
MA0048.1 | 5.20803e-09 |
MA0050.1 | 4.34823 |
MA0051.1 | 0.14022 |
MA0052.1 | 0.775544 |
MA0055.1 | 7.70791e-07 |
MA0056.1 | 0 |
MA0057.1 | 2.48125e-05 |
MA0058.1 | 0.0039966 |
MA0059.1 | 5.94429e-05 |
MA0060.1 | 0.000471563 |
MA0061.1 | 3.84681 |
MA0063.1 | 0 |
MA0066.1 | 0.0418037 |
MA0067.1 | 0.158685 |
MA0068.1 | 1.11158 |
MA0069.1 | 1.00153 |
MA0070.1 | 0.545013 |
MA0071.1 | 0.594673 |
MA0072.1 | 0.90087 |
MA0073.1 | 0.973478 |
MA0074.1 | 0.0102005 |
MA0076.1 | 0.00179848 |
MA0077.1 | 0.120329 |
MA0078.1 | 1.32268 |
MA0081.1 | 1.02493 |
MA0083.1 | 0.0189794 |
MA0084.1 | 0.636144 |
MA0087.1 | 1.18989 |
MA0088.1 | 5.269e-08 |
MA0089.1 | 0 |
MA0090.1 | 0.0546892 |
MA0091.1 | 0.272027 |
MA0092.1 | 0.296086 |
MA0093.1 | 0.00911935 |
MA0095.1 | 0 |
MA0098.1 | 0 |
MA0100.1 | 0.0242771 |
MA0101.1 | 2.60688 |
MA0103.1 | 0.302457 |
MA0105.1 | 0.119599 |
MA0106.1 | 0.00272226 |
MA0107.1 | 4.90576 |
MA0108.2 | 0.747626 |
MA0109.1 | 0 |
MA0111.1 | 0.376041 |
MA0113.1 | 0.79194 |
MA0114.1 | 0.0549644 |
MA0115.1 | 0.204862 |
MA0116.1 | 0.00124532 |
MA0117.1 | 0.0833876 |
MA0119.1 | 0.463884 |
MA0122.1 | 1.12163 |
MA0124.1 | 0.415792 |
MA0125.1 | 0.663891 |
MA0130.1 | 0 |
MA0131.1 | 0.00408656 |
MA0132.1 | 0 |
MA0133.1 | 0 |
MA0135.1 | 0.0289359 |
MA0136.1 | 3.27848 |
MA0139.1 | 1.30886e-09 |
MA0140.1 | 1.95774 |
MA0141.1 | 0.263775 |
MA0142.1 | 1.07775 |
MA0143.1 | 1.28182 |
MA0144.1 | 0.982774 |
MA0145.1 | 7.14749e-08 |
MA0146.1 | 0 |
MA0147.1 | 4.58443e-09 |
MA0148.1 | 1.49507 |
MA0149.1 | 0.000137041 |
MA0062.2 | 0.000540466 |
MA0035.2 | 2.03048 |
MA0039.2 | 0 |
MA0138.2 | 0.0185734 |
MA0002.2 | 3.88102 |
MA0137.2 | 1.84047 |
MA0104.2 | 1.54519e-12 |
MA0047.2 | 0.772637 |
MA0112.2 | 2.00939e-08 |
MA0065.2 | 9.74226e-05 |
MA0150.1 | 0.209113 |
MA0151.1 | 0 |
MA0152.1 | 0.120475 |
MA0153.1 | 0.295213 |
MA0154.1 | 0.0233549 |
MA0155.1 | 0.00769097 |
MA0156.1 | 1.64095 |
MA0157.1 | 2.02983 |
MA0158.1 | 0 |
MA0159.1 | 1.09885 |
MA0160.1 | 0.0986544 |
MA0161.1 | 0 |
MA0162.1 | 0 |
MA0163.1 | 4.82164e-17 |
MA0164.1 | 0.477286 |
MA0080.2 | 4.20523 |
MA0018.2 | 0.426307 |
MA0099.2 | 0.399732 |
MA0079.2 | 0 |
MA0102.2 | 0.114115 |
MA0258.1 | 0.0831499 |
MA0259.1 | 1.62832e-06 |
MA0442.1 | 0 |