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MCL coexpression mm9:66: Difference between revisions

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{{MCL_coexpression_mm9
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|coexpression_dpi_cluster_scores_median=0,0,0,0.114765798731257,0.0332228421052852,0.0497110725538271,0,0.780735532495689,0.381636141962868,0.394201672885709,0.11001975387204,0.0642873521037868,0.645816551409534,0.644604087009647,0,0.055196538487147,0,0.208351108345567,0.160707698715713,0.153628809860867,0.00583314082043396,0.100371788236022,0.100783889465809,0,0,0,0,0,0,0,0,0,0,0,0.110202921672641,0.000770481329870842,0.0806875710728457,0.594361763569348,0.496366326941122,0.479671268153543,0.983582702093688,0.67572133588867,0.468648781556237,0,0,0,0,0,0,0,0,0,0.480359819535978,0.591225886078848,0.528275438967845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389045962020779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0239874142643769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235248273739134,0.204093579732844,0.213611016799815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.180325425270187,0.179661587112782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00696511790926786,0,0.0464477452123786,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225286977023002,0.326256291421351,0.262261155392021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0492938041367021,0.0463814129009717,0.0417740847988257,0.031895734489288,0.041718751492076,0.0403878614760544,0.076282929407615,0.091228504856109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=GO:0005515;protein binding;0.00969600233514886;20658,20747,16598,73469,67150,22724,11796,59069,107976,12752,12226,240832,387609,12916,109711,18626,21652!GO:0005938;cell cortex;0.0108215793183714;109711,59069!GO:0043283;biopolymer metabolic process;0.0316809120672433;20747,16598,67150,22724,15388,12752,107976,107328,12226,67235,26412,387609,12916,27389,18626!GO:0030863;cortical cytoskeleton;0.0316809120672433;109711,59069!
|ontology_enrichment_celltype=CL:0000988!1.02e-22!32;CL:0002032!1.02e-22!32;CL:0000037!1.02e-22!32;CL:0000566!1.02e-22!32;CL:0000837!1.02e-22!32;CL:0000838!1.13e-22!12;CL:0000084!8.85e-21!11;CL:0000827!8.85e-21!11;CL:0000542!1.09e-20!13;CL:0000051!1.09e-20!13;CL:0000791!8.31e-18!9;CL:0000789!8.31e-18!9;CL:0002420!8.31e-18!9;CL:0002419!8.31e-18!9;CL:0000790!8.31e-18!9;CL:0002031!5.20e-17!25;CL:0002242!3.11e-16!16;CL:0000624!6.78e-16!8;CL:0002320!9.00e-16!46;CL:0000134!9.00e-16!46;CL:0000738!4.24e-15!17;CL:0002087!4.24e-15!17;CL:0000219!1.42e-12!54;CL:0000034!2.43e-12!97;CL:0000893!5.90e-12!6;CL:0002489!5.90e-12!6;CL:0000898!5.90e-12!6;CL:0000809!5.90e-12!6;CL:0000810!5.90e-12!6;CL:0000895!5.90e-12!6;CL:0000808!5.90e-12!6;CL:0000894!5.90e-12!6;CL:0000806!5.90e-12!6;CL:0000807!5.90e-12!6;CL:0000805!5.90e-12!6;CL:0002425!5.90e-12!6;CL:0002436!5.90e-12!6;CL:0002427!5.90e-12!6;CL:0002428!5.90e-12!6;CL:0002429!5.90e-12!6;CL:0002433!5.90e-12!6;CL:0002431!5.90e-12!6;CL:0002432!5.90e-12!6;CL:0000723!2.61e-10!91;CL:0000048!2.61e-10!91;CL:0002371!1.58e-08!118
|ontology_enrichment_disease=DOID:0060100!2.95e-07!3;DOID:4045!2.95e-07!3
|ontology_enrichment_uberon=UBERON:0002384!9.00e-16!46;UBERON:0002370!1.94e-12!23;UBERON:0000974!1.94e-12!23;UBERON:0004807!1.94e-12!23;UBERON:0005058!1.94e-12!23;UBERON:0003351!1.94e-12!23;UBERON:0009113!1.94e-12!23;UBERON:0003295!1.94e-12!23;UBERON:0009722!1.94e-12!23;UBERON:0005562!1.94e-12!23;UBERON:0007690!1.94e-12!23;UBERON:0006562!8.77e-12!24;UBERON:0003408!8.77e-12!24;UBERON:0001557!8.77e-12!24;UBERON:0001042!8.77e-12!24;UBERON:0008814!8.77e-12!24;UBERON:0009145!8.77e-12!24;UBERON:0002193!1.06e-11!48;UBERON:0002405!1.06e-11!48;UBERON:0002390!1.54e-11!45;UBERON:0003061!1.54e-11!45;UBERON:0000490!2.76e-10!66;UBERON:0000072!4.11e-10!27;UBERON:0003929!2.21e-09!55;UBERON:0004177!3.41e-09!29;UBERON:0005057!3.41e-09!29;UBERON:0000077!2.13e-08!35;UBERON:0005911!3.88e-08!69;UBERON:0000065!1.63e-07!41;UBERON:0001004!2.99e-07!42;UBERON:0000063!4.37e-07!35;UBERON:0007811!8.34e-07!36
|tfbs_overrepresentation_for_novel_motifs=0.524525,0.330316,0.502228,0.259717,0.209452,0.141451,0.900422,0.012651,0.119713,0.749892,1.77707,0.2321,0.776166,0.424242,0.364141,0,0.55722,0.0409693,0.225533,0.0135832,0.115906,0.572143,0.421017,0.267601,0.234996,0.711417,0.139677,0.184933,0.673966,0.962848,2.47257,0.235043,0.0876887,0.127137,1.49375,0.0103469,0.716181,2.08585,0.207115,0.368508,0.0284878,0.473961,0.252585,0.0105014,0.892416,1.51578,1.18915,1.41184,0.0938443,0.840462,1.26823,0.849762,0.408312,0.782443,1.20947,0.314326,0.0172088,0.752269,0.336028,0.308568,0.582431,0.342893,0.413952,0.675343,2.27378,0.125057,0.228572,0.235478,0.200699,0.150018,1.12618,0.108076,0.975862,0.141532,0.183817,0.806299,0.31156,0.455791,0.53274,0.125052,0.148856,0.862844,0.127525,0.100653,0.601319,0.348842,1.09917,0.0121439,0.711551,0.34755,0.622533,0.918091,0.122145,0.0228034,0.103891,0.0284076,0.113439,0.987156,0.924666,0.178175,0.140158,0.234637,0.451101,0.978106,0.0972643,0.786135,2.44542,0.137052,0.715692,0.659624,0.371063,0.240307,0.253381,1.55617,0.0920228,0.186865,0.339797,1.94611,0.561406,0.566195,0.956714,0.147564,0.158525,0.0167824,0.744109,0.793483,0.283279,0.243871,0.847566,0.185206,0.417493,0.738553,0.199953,0.0806258,0.331338,0.000455015,0.443546,0.0615459,0.277717,0.649516,0.324269,0.233078,0.17881,0.436097,0.311246,0.248265,0.703956,0.614724,0.342576,0.804925,0.792559,0.502313,0.262102,0.190644,1.10969,0.166502,0.855158,0.19772,0.291223,3.50859,0.601544,0.183098,0.795159,0.919136,0.0360179,0.132531,2.05485,0.14456,0.818737
}}

Latest revision as of 14:37, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:117282143..117282150,-p@chr10:117282143..117282150
-
Mm9::chr10:120911291..120911303,+p@chr10:120911291..120911303
+
Mm9::chr10:18781934..18781943,-p@chr10:18781934..18781943
-
Mm9::chr10:18781972..18781989,-p@chr10:18781972..18781989
-
Mm9::chr10:18782001..18782006,-p@chr10:18782001..18782006
-
Mm9::chr10:34004711..34004717,+p@chr10:34004711..34004717
+
Mm9::chr10:61970649..61970662,+p@chr10:61970649..61970662
+
Mm9::chr10:80086352..80086393,-p@chr10:80086352..80086393
-
Mm9::chr10:96079268..96079300,-p@chr10:96079268..96079300
-
Mm9::chr10:96084020..96084029,+p@chr10:96084020..96084029
+
Mm9::chr10:98376789..98376802,-p@chr10:98376789..98376802
-
Mm9::chr10:98724503..98724525,+p@chr10:98724503..98724525
+
Mm9::chr11:102156783..102156788,+p@chr11:102156783..102156788
+
Mm9::chr11:106648032..106648081,-p@chr11:106648032..106648081
-
Mm9::chr11:106649374..106649377,-p@chr11:106649374..106649377
-
Mm9::chr11:109333550..109333561,+p@chr11:109333550..109333561
+
Mm9::chr11:118007362..118007377,+p@chr11:118007362..118007377
+
Mm9::chr11:51398143..51398189,-p@chr11:51398143..51398189
-
Mm9::chr11:6526123..6526194,+p@chr11:6526123..6526194
+
Mm9::chr11:68908217..68908228,-p@chr11:68908217..68908228
-
Mm9::chr11:68912225..68912230,+p5@Per1
Mm9::chr11:74645296..74645306,-p@chr11:74645296..74645306
-
Mm9::chr11:74645684..74645707,-p@chr11:74645684..74645707
-
Mm9::chr11:74645721..74645737,-p@chr11:74645721..74645737
-
Mm9::chr11:82891834..82891854,+p@chr11:82891834..82891854
+
Mm9::chr11:86618773..86618777,-p@chr11:86618773..86618777
-
Mm9::chr11:96849386..96849396,+p@chr11:96849386..96849396
+
Mm9::chr12:110030851..110030864,-p@chr12:110030851..110030864
-
Mm9::chr12:81361129..81361196,-p2@Actn1
Mm9::chr12:81893979..81894023,-p@chr12:81893979..81894023
-
Mm9::chr12:85516589..85516609,-p@chr12:85516589..85516609
-
Mm9::chr12:85584362..85584377,+p@chr12:85584362..85584377
+
Mm9::chr12:92826788..92826814,-p@chr12:92826788..92826814
-
Mm9::chr12:92826918..92826933,+p@chr12:92826918..92826933
+
Mm9::chr13:114390934..114390939,-p@chr13:114390934..114390939
-
Mm9::chr13:114390947..114390958,-p@chr13:114390947..114390958
-
Mm9::chr13:14158252..14158263,+p@chr13:14158252..14158263
+
Mm9::chr13:49311029..49311045,+p@chr13:49311029..49311045
+
Mm9::chr13:49311525..49311571,+p@chr13:49311525..49311571
+
Mm9::chr13:49403283..49403306,+p@chr13:49403283..49403306
+
Mm9::chr13:5863551..5863560,-p@chr13:5863551..5863560
-
Mm9::chr13:91947385..91947398,+p@chr13:91947385..91947398
+
Mm9::chr14:122277671..122277685,-p@chr14:122277671..122277685
-
Mm9::chr14:22570597..22570606,-p8@Dusp13
Mm9::chr14:37948659..37948687,+p@chr14:37948659..37948687
+
Mm9::chr14:56179177..56179232,-p@chr14:56179177..56179232
-
Mm9::chr14:70180426..70180437,+p@chr14:70180426..70180437
+
Mm9::chr14:76245950..76245954,+p4@Tpt1
Mm9::chr15:36721001..36721006,-p13@Ywhaz
Mm9::chr15:57527217..57527240,+p6@Zhx2
Mm9::chr15:59484457..59484469,-p@chr15:59484457..59484469
-
Mm9::chr15:59484966..59484978,+p@chr15:59484966..59484978
+
Mm9::chr15:81977472..81977489,-p@chr15:81977472..81977489
-
Mm9::chr15:98398453..98398467,+p@chr15:98398453..98398467
+
Mm9::chr16:23988649..23988660,-p@chr16:23988649..23988660
-
Mm9::chr16:91647305..91647351,+p4@Son
Mm9::chr16:91647936..91647959,-p@chr16:91647936..91647959
-
Mm9::chr17:25321327..25321347,-p@chr17:25321327..25321347
-
Mm9::chr17:26698310..26698331,-p1@ENSMUST00000011196
Mm9::chr17:26708047..26708069,+p@chr17:26708047..26708069
+
Mm9::chr17:27070015..27070103,+p1@Phf1
Mm9::chr17:29629785..29629804,-p@chr17:29629785..29629804
-
Mm9::chr17:36053922..36053938,+p1@Ppp1r10
Mm9::chr17:36107001..36107013,+p@chr17:36107001..36107013
+
Mm9::chr17:5189899..5189917,+p@chr17:5189899..5189917
+
Mm9::chr17:73457181..73457216,-p@chr17:73457181..73457216
-
Mm9::chr17:8067736..8067745,-p@chr17:8067736..8067745
-
Mm9::chr17:84545440..84545456,+p@chr17:84545440..84545456
+
Mm9::chr18:3337249..3337274,-p17@Crem
Mm9::chr18:3337844..3337868,+p@chr18:3337844..3337868
+
Mm9::chr18:3338209..3338212,+p@chr18:3338209..3338212
+
Mm9::chr19:24552099..24552117,+p@chr19:24552099..24552117
+
Mm9::chr19:34267072..34267110,-p@chr19:34267072..34267110
-
Mm9::chr19:3769104..3769112,+p@chr19:3769104..3769112
+
Mm9::chr19:41923002..41923005,+p@chr19:41923002..41923005
+
Mm9::chr19:53269820..53269851,+p@chr19:53269820..53269851
+
Mm9::chr19:53465371..53465420,+p@chr19:53465371..53465420
+
Mm9::chr19:53603385..53603399,-p@chr19:53603385..53603399
-
Mm9::chr19:6342562..6342573,+p7@Map4k2
Mm9::chr19:7281173..7281203,+p@chr19:7281173..7281203
+
Mm9::chr1:127331460..127331471,+p@chr1:127331460..127331471
+
Mm9::chr1:133903747..133903752,-p@chr1:133903747..133903752
-
Mm9::chr1:154135165..154135176,-p@chr1:154135165..154135176
-
Mm9::chr1:156945862..156945876,-p@chr1:156945862..156945876
-
Mm9::chr1:157883318..157883388,+p4@Tor1aip2
Mm9::chr1:164501604..164501618,-p@chr1:164501604..164501618
-
Mm9::chr1:174306419..174306449,-p@chr1:174306419..174306449
-
Mm9::chr1:184271857..184271866,+p@chr1:184271857..184271866
+
Mm9::chr1:31006734..31006754,+p@chr1:31006734..31006754
+
Mm9::chr1:33726706..33726725,+p1@ENSMUST00000051203
Mm9::chr1:53841164..53841180,-p@chr1:53841164..53841180
-
Mm9::chr1:53841311..53841320,+p@chr1:53841311..53841320
+
Mm9::chr1:55109442..55109466,-p@chr1:55109442..55109466
-
Mm9::chr1:58479688..58479693,-p@chr1:58479688..58479693
-
Mm9::chr1:7078821..7078863,-p@chr1:7078821..7078863
-
Mm9::chr2:126500378..126500382,+p@chr2:126500378..126500382
+
Mm9::chr2:154483735..154483770,-p@chr2:154483735..154483770
-
Mm9::chr2:154483777..154483786,-p@chr2:154483777..154483786
-
Mm9::chr2:156022259..156022297,-p@chr2:156022259..156022297
-
Mm9::chr2:163900952..163900967,-p@chr2:163900952..163900967
-
Mm9::chr2:164705545..164705561,+p3@Pcif1
Mm9::chr2:167600890..167600901,-p@chr2:167600890..167600901
-
Mm9::chr2:180011557..180011577,-p@chr2:180011557..180011577
-
Mm9::chr2:181116012..181116070,+p1@Lime1
Mm9::chr2:181231683..181231713,-p@chr2:181231683..181231713
-
Mm9::chr2:22923536..22923578,-p@chr2:22923536..22923578
-
Mm9::chr2:24830828..24830840,+p@chr2:24830828..24830840
+
Mm9::chr2:24830856..24830866,+p@chr2:24830856..24830866
+
Mm9::chr2:24831637..24831660,+p4@Pnpla7
Mm9::chr2:25111185..25111205,+p2@Tmem203
Mm9::chr2:28373002..28373004,+p@chr2:28373002..28373004
+
Mm9::chr2:3430364..3430399,+p2@Cdnf
Mm9::chr2:43594536..43594549,-p@chr2:43594536..43594549
-
Mm9::chr2:58009520..58009532,-p9@Cytip
Mm9::chr2:60048486..60048510,-p@chr2:60048486..60048510
-
Mm9::chr2:72818011..72818033,+p@chr2:72818011..72818033
+
Mm9::chr2:75542186..75542197,+p@chr2:75542186..75542197
+
Mm9::chr3:106588322..106588344,+p@chr3:106588322..106588344
+
Mm9::chr3:108714746..108714774,+p@chr3:108714746..108714774
+
Mm9::chr3:120994516..120994532,-p@chr3:120994516..120994532
-
Mm9::chr3:16083833..16083844,-p@chr3:16083833..16083844
-
Mm9::chr3:65762229..65762257,+p@chr3:65762229..65762257
+
Mm9::chr3:68960718..68960760,+p@chr3:68960718..68960760
+
Mm9::chr3:89191054..89191070,-p5@Zbtb7b
Mm9::chr3:89892015..89892019,+p2@Tpm3
Mm9::chr3:90017558..90017592,-p1@Gm9846
p1@Rps27
Mm9::chr3:90070315..90070319,-p@chr3:90070315..90070319
-
Mm9::chr4:107973920..107973932,+p@chr4:107973920..107973932
+
Mm9::chr4:124804695..124804707,+p@chr4:124804695..124804707
+
Mm9::chr4:154574866..154574880,-p@chr4:154574866..154574880
-
Mm9::chr4:154998394..154998430,-p@chr4:154998394..154998430
-
Mm9::chr4:33159911..33159924,-p@chr4:33159911..33159924
-
Mm9::chr4:35173449..35173470,+p@chr4:35173449..35173470
+
Mm9::chr4:35173472..35173491,+p@chr4:35173472..35173491
+
Mm9::chr4:44180641..44180651,-p14@Rnf38
Mm9::chr4:48056387..48056413,+p@chr4:48056387..48056413
+
Mm9::chr4:59594299..59594310,-p@chr4:59594299..59594310
-
Mm9::chr4:94828204..94828213,+p@chr4:94828204..94828213
+
Mm9::chr5:141072537..141072557,-p@chr5:141072537..141072557
-
Mm9::chr5:145962698..145962742,-p1@Zkscan14
Mm9::chr5:149211568..149211585,+p@chr5:149211568..149211585
+
Mm9::chr5:22924332..22924375,-p@chr5:22924332..22924375
-
Mm9::chr5:22924427..22924468,+p@chr5:22924427..22924468
+
Mm9::chr5:22938527..22938545,-p@chr5:22938527..22938545
-
Mm9::chr5:22938568..22938597,-p@chr5:22938568..22938597
-
Mm9::chr5:22939771..22939781,-p3@ENSMUST00000101522
Mm9::chr5:22941071..22941082,-p@chr5:22941071..22941082
-
Mm9::chr5:32000423..32000440,+p3@Bre
Mm9::chr5:65197600..65197603,+p@chr5:65197600..65197603
+
Mm9::chr5:65782624..65782644,-p2@Gm5451
p2@Rpl9
Mm9::chr5:73648195..73648207,+p@chr5:73648195..73648207
+
Mm9::chr5:86602063..86602077,+p@chr5:86602063..86602077
+
Mm9::chr6:112646329..112646343,+p3@ENSMUST00000146834
Mm9::chr6:113646694..113646700,-p@chr6:113646694..113646700
-
Mm9::chr6:122761207..122761239,+p@chr6:122761207..122761239
+
Mm9::chr6:122761522..122761539,+p@chr6:122761522..122761539
+
Mm9::chr6:136752463..136752480,+p@chr6:136752463..136752480
+
Mm9::chr6:145288611..145288628,-p@chr6:145288611..145288628
-
Mm9::chr6:145289534..145289555,+p@chr6:145289534..145289555
+
Mm9::chr6:31076737..31076742,+p@chr6:31076737..31076742
+
Mm9::chr6:38304687..38304702,+p@chr6:38304687..38304702
+
Mm9::chr6:38304706..38304719,+p@chr6:38304706..38304719
+
Mm9::chr6:38304753..38304767,+p@chr6:38304753..38304767
+
Mm9::chr6:38304768..38304780,+p@chr6:38304768..38304780
+
Mm9::chr6:38501212..38501256,-p@chr6:38501212..38501256
-
Mm9::chr6:39155493..39155505,+p@chr6:39155493..39155505
+
Mm9::chr7:109359106..109359134,+p@chr7:109359106..109359134
+
Mm9::chr7:109398734..109398769,+p@chr7:109398734..109398769
+
Mm9::chr7:133728149..133728162,-p10@Cln3
p10@LOC100047702
Mm9::chr7:16880787..16880801,-p@chr7:16880787..16880801
-
Mm9::chr7:16880808..16880835,-p@chr7:16880808..16880835
-
Mm9::chr7:26541097..26541116,-p@chr7:26541097..26541116
-
Mm9::chr7:29160789..29160811,+p@chr7:29160789..29160811
+
Mm9::chr7:29165300..29165304,-p@chr7:29165300..29165304
-
Mm9::chr7:29166033..29166040,-p@chr7:29166033..29166040
-
Mm9::chr7:29166045..29166061,-p@chr7:29166045..29166061
-
Mm9::chr7:29594249..29594270,+p7@Hnrnpl
Mm9::chr7:46773325..46773363,-p@chr7:46773325..46773363
-
Mm9::chr7:7251540..7251560,+p@chr7:7251540..7251560
+
Mm9::chr7:80682573..80682652,-p3@Chd2
Mm9::chr7:80682897..80682944,+p@chr7:80682897..80682944
+
Mm9::chr7:80682950..80682978,+p@chr7:80682950..80682978
+
Mm9::chr7:80703713..80703770,+p@chr7:80703713..80703770
+
Mm9::chr8:125566563..125566572,+p2@2810013P06Rik
Mm9::chr8:125898214..125898227,-p@chr8:125898214..125898227
-
Mm9::chr8:13105353..13105376,-p3@Pcid2
Mm9::chr8:26712542..26712562,-p@chr8:26712542..26712562
-
Mm9::chr8:35218097..35218110,-p@chr8:35218097..35218110
-
Mm9::chr8:48799843..48799865,-p@chr8:48799843..48799865
-
Mm9::chr8:72240314..72240323,-p4@Zfp869
Mm9::chr8:72240336..72240391,-p2@Zfp869
Mm9::chr8:74660628..74660650,-p@chr8:74660628..74660650
-
Mm9::chr8:74660673..74660688,-p@chr8:74660673..74660688
-
Mm9::chr8:74842952..74842970,+p1@Klf2
Mm9::chr8:74843432..74843470,+p@chr8:74843432..74843470
+
Mm9::chr8:74843482..74843506,+p@chr8:74843482..74843506
+
Mm9::chr8:86272895..86272904,+p@chr8:86272895..86272904
+
Mm9::chr8:86721303..86721315,+p@chr8:86721303..86721315
+
Mm9::chr8:86725882..86725891,-p@chr8:86725882..86725891
-
Mm9::chr8:86727567..86727570,-p@chr8:86727567..86727570
-
Mm9::chr8:87502871..87502886,+p@chr8:87502871..87502886
+
Mm9::chr9:108392852..108392878,-p@chr9:108392852..108392878
-
Mm9::chr9:117950276..117950280,+p@chr9:117950276..117950280
+
Mm9::chr9:36575597..36575616,+p2@ENSMUST00000126325
p2@uc009otz.1
Mm9::chr9:45753130..45753140,-p16@Sidt2
Mm9::chr9:45753402..45753433,+p@chr9:45753402..45753433
+
Mm9::chr9:63585614..63585634,+p@chr9:63585614..63585634
+
Mm9::chr9:77764951..77764971,-p@chr9:77764951..77764971
-
Mm9::chr9:7871936..7871947,+p@chr9:7871936..7871947
+
Mm9::chr9:7872985..7873009,-p4@Birc3
Mm9::chrX:138825261..138825274,+p@chrX:138825261..138825274
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005515protein binding0.00969600233514886
GO:0005938cell cortex0.0108215793183714
GO:0043283biopolymer metabolic process0.0316809120672433
GO:0030863cortical cytoskeleton0.0316809120672433



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen
hematopoietic cell1.02e-2232
hematopoietic oligopotent progenitor cell1.02e-2232
hematopoietic stem cell1.02e-2232
angioblastic mesenchymal cell1.02e-2232
hematopoietic multipotent progenitor cell1.02e-2232
lymphoid lineage restricted progenitor cell1.13e-2212
T cell8.85e-2111
pro-T cell8.85e-2111
lymphocyte1.09e-2013
common lymphoid progenitor1.09e-2013
mature alpha-beta T cell8.31e-189
alpha-beta T cell8.31e-189
immature T cell8.31e-189
mature T cell8.31e-189
immature alpha-beta T cell8.31e-189
hematopoietic lineage restricted progenitor cell5.20e-1725
nucleate cell3.11e-1616
CD4-positive, alpha-beta T cell6.78e-168
connective tissue cell9.00e-1646
mesenchymal cell9.00e-1646
leukocyte4.24e-1517
nongranular leukocyte4.24e-1517
motile cell1.42e-1254
stem cell2.43e-1297
thymocyte5.90e-126
double negative thymocyte5.90e-126
naive T cell5.90e-126
double-positive, alpha-beta thymocyte5.90e-126
CD4-positive, alpha-beta thymocyte5.90e-126
naive thymus-derived CD4-positive, alpha-beta T cell5.90e-126
DN4 thymocyte5.90e-126
DN1 thymic pro-T cell5.90e-126
DN2 thymocyte5.90e-126
DN3 thymocyte5.90e-126
immature single positive thymocyte5.90e-126
early T lineage precursor5.90e-126
mature CD4 single-positive thymocyte5.90e-126
resting double-positive thymocyte5.90e-126
double-positive blast5.90e-126
CD69-positive double-positive thymocyte5.90e-126
CD69-positive, CD4-positive single-positive thymocyte5.90e-126
CD4-positive, CD8-intermediate double-positive thymocyte5.90e-126
CD24-positive, CD4 single-positive thymocyte5.90e-126
somatic stem cell2.61e-1091
multi fate stem cell2.61e-1091
somatic cell1.58e-08118

Uber Anatomy
Ontology termp-valuen
connective tissue9.00e-1646
thymus1.94e-1223
neck1.94e-1223
respiratory system epithelium1.94e-1223
hemolymphoid system gland1.94e-1223
pharyngeal epithelium1.94e-1223
thymic region1.94e-1223
pharyngeal gland1.94e-1223
entire pharyngeal arch endoderm1.94e-1223
thymus primordium1.94e-1223
early pharyngeal endoderm1.94e-1223
pharynx8.77e-1224
gland of gut8.77e-1224
upper respiratory tract8.77e-1224
chordate pharynx8.77e-1224
pharyngeal arch system8.77e-1224
pharyngeal region of foregut8.77e-1224
hemolymphoid system1.06e-1148
immune system1.06e-1148
hematopoietic system1.54e-1145
blood island1.54e-1145
unilaminar epithelium2.76e-1066
segment of respiratory tract4.11e-1027
gut epithelium2.21e-0955
hemopoietic organ3.41e-0929
immune organ3.41e-0929
mixed endoderm/mesoderm-derived structure2.13e-0835
endo-epithelium3.88e-0869
respiratory tract1.63e-0741
respiratory system2.99e-0742
organ segment4.37e-0735
craniocervical region8.34e-0736

Disease
Ontology termp-valuen
musculoskeletal system cancer2.95e-073
muscle cancer2.95e-073


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.11.31717
MA0004.10.627737
MA0006.11.81968
MA0007.10.414683
MA0009.10.134027
MA0014.11.37756
MA0017.10.0540875
MA0019.10.00725587
MA0024.10.590424
MA0025.12.16298
MA0027.11.11299
MA0028.13.27647
MA0029.10.0274111
MA0030.10.343283
MA0031.11.23569
MA0038.10.250731
MA0040.10.295193
MA0041.10.728626
MA0042.10.93685
MA0043.10.728532
MA0046.10.0133642
MA0048.10.070414
MA0050.11.07758
MA0051.11.49965
MA0052.10.523501
MA0055.10.0406815
MA0056.10
MA0057.10.513941
MA0058.11.04389
MA0059.11.17119
MA0060.15.09791
MA0061.12.11417
MA0063.10
MA0066.10.0765257
MA0067.11.56563
MA0068.10.138849
MA0069.10.524347
MA0070.12.30152
MA0071.10.0385339
MA0072.10.0495369
MA0073.10.886765
MA0074.10.856761
MA0076.13.53413
MA0077.10.117711
MA0078.10.0713541
MA0081.11.8945
MA0083.13.51216
MA0084.10.270859
MA0087.10.0154448
MA0088.10.103654
MA0089.10
MA0090.10.888335
MA0091.10.706854
MA0092.10.167859
MA0093.11.13394
MA0095.10
MA0098.10
MA0100.10.0785597
MA0101.11.94261
MA0103.10.0689197
MA0105.12.73663
MA0106.10.0777575
MA0107.12.14134
MA0108.21.49883
MA0109.10
MA0111.10.392118
MA0113.10.0238907
MA0114.10.344073
MA0115.10.0970985
MA0116.10.261361
MA0117.11.74725
MA0119.10.135103
MA0122.10.0898765
MA0124.10.250248
MA0125.10.181967
MA0130.10
MA0131.10.563139
MA0132.10
MA0133.10
MA0135.10.525029
MA0136.12.41329
MA0139.10.618322
MA0140.10.13612
MA0141.10.00598514
MA0142.10.0569749
MA0143.10.131312
MA0144.11.19989
MA0145.11.11971
MA0146.10.556997
MA0147.11.39039
MA0148.10.726094
MA0149.10.00141076
MA0062.210.6475
MA0035.20.00711953
MA0039.24.25928
MA0138.20.226228
MA0002.20.760082
MA0137.21.38974
MA0104.21.56384
MA0047.20.707255
MA0112.20.232654
MA0065.20.132361
MA0150.10.542463
MA0151.10
MA0152.10.154401
MA0153.10.129735
MA0154.10.0835766
MA0155.10.691343
MA0156.13.82522
MA0157.11.62399
MA0158.10
MA0159.10.431993
MA0160.10.0943248
MA0161.10
MA0162.12.06293
MA0163.10.783101
MA0164.10.0628835
MA0080.26.65252
MA0018.26.49878
MA0099.20.513915
MA0079.23.65645
MA0102.20.307091
MA0258.10.0384142
MA0259.10.791743
MA0442.10
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