FFCP PHASE1:Hg19::chr1:31345799..31345806,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9672 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=10660 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=-363bp_to_AL049426_5end | |||
|description=CAGE_peak_11_at_SDC3_5end | |||
|id=chr1:31345799..31345806,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002577;1.24e-18;3!CL:0000306;3.15e-14;4!CL:0002222;3.15e-14;4!CL:0002224;3.15e-14;4!CL:0000047;5.94e-08;2!CL:0002536;5.94e-08;2!CL:0002561;5.94e-08;2!CL:0002593;5.94e-08;2!CL:0000349;7.41e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002577,7.26e-19,3;CL:0000306,3.16e-14,4;CL:0002222,3.16e-14,4;CL:0002224,3.16e-14,4;CL:0002561,4.09e-08,2;CL:0002536,7.52e-08,2;CL:0002593,8.60e-08,2;CL:0000047,1.45e-07,8;CL:0000349,7.05e-07,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.00e-14!82;UBERON:0001049!4.70e-14!57;UBERON:0005068!4.70e-14!57;UBERON:0006241!4.70e-14!57;UBERON:0007135!4.70e-14!57;UBERON:0005743!2.09e-13!86;UBERON:0003075!2.46e-13!86;UBERON:0007284!2.46e-13!86;UBERON:0002346!8.86e-13!90;UBERON:0002616!3.56e-12!59;UBERON:0000073!2.13e-11!94;UBERON:0001016!2.13e-11!94;UBERON:0004121!4.11e-11!169;UBERON:0000924!7.03e-11!173;UBERON:0006601!7.03e-11!173;UBERON:0000955!1.14e-10!69;UBERON:0006238!1.14e-10!69;UBERON:0000956!1.15e-10!25;UBERON:0000203!1.15e-10!25;UBERON:0001869!2.64e-10!32;UBERON:0001893!3.58e-10!34;UBERON:0002020!3.68e-10!34;UBERON:0003528!3.68e-10!34;UBERON:0000475!1.16e-09!365;UBERON:0000033!1.25e-09!123;UBERON:0002791!1.28e-09!33;UBERON:0000153!2.03e-09!129;UBERON:0007811!2.03e-09!129;UBERON:0002780!2.50e-09!41;UBERON:0001890!2.50e-09!41;UBERON:0006240!2.50e-09!41;UBERON:0003080!6.29e-09!42;UBERON:0003056!6.40e-09!61;UBERON:0002619!9.52e-09!22;UBERON:0001950!1.61e-08!20;UBERON:0004111!1.92e-08!241;UBERON:0000477!2.46e-08!286;UBERON:0000483!3.83e-08!309;UBERON:0000119!7.99e-08!312;UBERON:0000025!1.09e-07!194;UBERON:0000064!1.42e-07!219;UBERON:0000467!1.74e-07!625;UBERON:0000480!2.11e-07!626;UBERON:0000468!7.41e-07!659;UBERON:0003076!7.87e-07!15;UBERON:0003057!7.87e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0001987;3.15e-14;4!UBERON:0010077;3.15e-14;4!UBERON:0005389;3.15e-14;4!UBERON:0000484;3.15e-14;4!UBERON:0000965;3.15e-14;4!UBERON:0001803;3.15e-14;4!UBERON:0002771;5.94e-08;2!UBERON:0005933;5.94e-08;2!UBERON:0005942;5.94e-08;2!UBERON:0002456;5.94e-08;2!UBERON:0005932;5.94e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001987,2.11e-14,4;UBERON:0004340,2.11e-14,4;UBERON:0010077,3.16e-14,4;UBERON:0005389,3.16e-14,4;UBERON:0000484,3.16e-14,4;UBERON:0002546,3.16e-14,4;UBERON:0000965,3.16e-14,4;UBERON:0001803,3.16e-14,4;UBERON:0003073,3.16e-14,4;UBERON:0005426,3.16e-14,4;UBERON:0005631,3.74e-09,14;UBERON:0000158,3.74e-09,14;UBERON:0003124,1.27e-08,7;UBERON:0005933,4.09e-08,2;UBERON:0005942,4.09e-08,2;UBERON:0005932,4.09e-08,2;UBERON:0002771,4.38e-08,2;UBERON:0002456,8.60e-08,2;UBERON:0000076,1.45e-07,8 | |||
|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0.872338524100369,0,0.631719873426831,0,0.245733936501509,0,1.09220686065086,0,0,0.331397375727916,0,0,0,0,0.492484232307152,0.408001382488506,0.626909442956176,0.286235987131057,0.273748850145768,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.12786256184353,0,0.50133791063589,0,0,0,0.0945348171640679,0.443458794925128,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.760272105718513,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0.25326102332916,0,1.14734648299525,0.354668382198357,0.560677600142307,2.1349799145941,0.49333509683432,0,0,0,0.454072282934794,0,0,0,0,0,0.117434498643765,0,0,0,0,0.103325781175765,0,0,0,0.718618141816238,0,0,0,0,0.30648779579902,0.150238058906597,0.113432183160021,0.358779271377724,0,0,0,0.412210116953756,0,0,0,0.194874010322397,0,0,0.484938170456436,1.06502877754984,0.302256294682921,0.169560592310488,0.193260853163297,0.272746120590835,0,0,0.132529768321485,0,0,0,0,0,0,0,1.85747171212792,0.721879481669586,0,0,0,0,0,0,0.134831308160164,0,0,0.738155454624648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44331342025273,0.115930404975077,0,0.144366447761074,0,0.380508304469197,0,0,0.492434012174795,0,0.148631162288728,0,0,0,0,0,0,1.47798971368783,0,0,0,0,0.063497894292169,0.763976851116555,0,0,0.925447434329912,0.300343057843917,0.857479297891735,0,0,0,0,0,0,0.26593811658487,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0.502257091432126,0,0,0,0,0,0.205476322550383,0.537182889719687,0,0,0,0,1.01637849688985,0,0.773288812777695,0.335032530668698,1.91381625495949,0,0,0,0,0,0.271265023699736,0,0.356857977594324,0.157702415033935,0.117141414992713,0,0,0,0,0.184369168541703,0.0868836144680828,0.195801157462741,0.686286847621712,0,0,0,0,1.66435439510497,1.5119514666484,0,0,0.561320188866147,0,0,0.160853921143607,0,0.308419387605311,0.177561725313127,0,0,0,0,0,0,0,0.728364672026868,0.655622074797121,0,0.231046011313244,0,0,0.105551628892876,0,0,0.215915916102139,0,0.270946437543853,0.501689773854853,0.254876273045038,0,0.223874754722178,0,0,0,0,0,0,0.366277859273374,0,0,0.650060246036521,0,0,0,0.307007349452259,0,0,0,0,0.0890320356467374,0.165284915360978,0.384380134730212,0,0,0.464845549297286,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0.42793898803392,0,0,0.179872457583315,0.274537029736055,0.117812402345686,0,0,0,0.48763373908959,0,1.05650146756755,0.136499911407986,0.565621727814851,0,0.551365343546124,0,0.438450885253763,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0.349934720244983,0,0.670302275535787,0,0.0941438007767792,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.281338832821026,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.278304294485554,0,0,0.0874599999961957,0,0,0,0.236387681767936,0,0,0,0,0.60298219312704,0,0.331737779793674,0.295547618953547,0.219385397153973,0,0,0.153900517007594,0.227884111694002,0.23056390438806,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0.702793337176017,0,0,0,0,0,0.61214552326098,0.063186579628488,0,0,0,0.330991955875499,0,0,0,0.277349346026277,0,0,0,0.34945333648406,0,0,0,0.0821154570532092,0,0,0,0,0,0.253243183823515,0,0.240476460754601,0.213452994739353,0.19980960958213,0,0,0.171594997861965,0,0,0,0,0,0.203996435272644,0,0,0,0,0.429765441419957,0,0,0.458320848023367,0,0,0.429226048136571,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.817220436669454,0.160753148465019,0,0,0,0,0.242998226632099,0,0,0.157363764404994,0,0,0,0,0,0.25426853765475,0,0,0.326587360109409,1.19730191562487,0,0,0.566560457600628,0,0,0.258565912723101,0.13223260174269,0,0,0,0,0.414239055347196,0,0,0,0.638341257770182,0,0,0,0,0,0.886068179966986,1.70836770862748,0.3755727921195,0,0.110929051536852,0.18628920882415,0,0,0.151649117541648,0.285465333544967,0,0,0.144921028610825,0.149254802886874,0,0,0.378806010550178,0,0,0,0.756154618816195,0.15543720058278,0,0.159296767163702,0,0,0,0,0,0,0.380805212168795,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0,0,0.308801447160972,0.219284049578707,0.176689145945881,0.192914038270915,0.168942440653073,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0.918736432059601,0.321146125482298,0,0.319267718114302,0.205116364240755,0.252071696221718,0.138314504928436,0.322951291263702,0,0,0,0.183428598521679,0,0,0,0,0,0.40341013740704,0,0,0,0,0.270150338473579,0,0,0.19024743058172,1.09394961803644,0,0,0.175871244359621,0,0,0,0.606965604236632,0,0.0887023701626388,0,0,0.135939465953663,0.197318320688547,0,0,0,0,0,0,0,0,0.0714765441766563,0.158013611732727,0,0,0,0.414432328326074,0.6828739083758,0,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0,0.470317296361523,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| |||
|short_description=p11@SDC3 | |||
}} |
Revision as of 17:31, 10 January 2014
Short description: | p11@SDC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_SDC3_5end |
Coexpression cluster: | NA |
Association with transcript: | -363bp_to_AL049426_5end |
EntrezGene: | SDC3 |
HGNC: | 10660 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
placental epithelial cell | 7.26e-19 | 3 |
crystallin accumulating cell | 3.16e-14 | 4 |
vertebrate lens cell | 3.16e-14 | 4 |
lens epithelial cell | 3.16e-14 | 4 |
outer root sheath cell | 4.09e-08 | 2 |
amniotic epithelial cell | 7.52e-08 | 2 |
smooth muscle cell of the internal thoracic artery | 8.60e-08 | 2 |
neuronal stem cell | 1.45e-07 | 8 |
extraembryonic cell | 7.05e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
placenta | 2.11e-14 | 4 |
allantois | 2.11e-14 | 4 |
cuboidal epithelium | 3.16e-14 | 4 |
transparent eye structure | 3.16e-14 | 4 |
simple cuboidal epithelium | 3.16e-14 | 4 |
cranial placode | 3.16e-14 | 4 |
lens of camera-type eye | 3.16e-14 | 4 |
epithelium of lens | 3.16e-14 | 4 |
lens placode | 3.16e-14 | 4 |
lens vesicle | 3.16e-14 | 4 |
extraembryonic membrane | 3.74e-09 | 14 |
membranous layer | 3.74e-09 | 14 |
chorion | 1.27e-08 | 7 |
hair root sheath | 4.09e-08 | 2 |
hair outer root sheath | 4.09e-08 | 2 |
bulb of hair follicle | 4.09e-08 | 2 |
middle temporal gyrus | 4.38e-08 | 2 |
internal thoracic artery | 8.60e-08 | 2 |
external ectoderm | 1.45e-07 | 8 |