FFCP PHASE1:Hg19::chr10:72136543..72136550,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=55222 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=23421 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=-253bp_to_CU692838,HQ448301_5end | |||
|description=CAGE_peak_4_at_LRRC20_5end | |||
|id=chr10:72136543..72136550,- | |||
|ontology_enrichment_celltype=CL:1000449!5.75e-13!16;CL:0002681!7.81e-13!13;CL:0002584!7.81e-13!13;CL:0000066!1.06e-12!254;CL:1000497!2.51e-11!18;CL:0002518!2.51e-11!18;CL:0000077!4.22e-11!19;CL:1000507!9.21e-11!12;CL:1000494!9.21e-11!12;CL:0000076!5.66e-09!62;CL:0002618!1.54e-08!3;CL:1000612!6.03e-07!7;CL:1000746!6.03e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:1000449;2.48e-09;15!CL:1000497;2.97e-08;17!CL:0002518;2.97e-08;17!CL:1000507;3.25e-08;10!CL:1000494;3.25e-08;10!CL:0000077;1.45e-07;19!CL:0002681;5.43e-07;12!CL:0002584;5.43e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:1000449,2.53e-09,15;CL:1000497,3.03e-08,17;CL:0002518,3.03e-08,17;CL:1000507,3.50e-08,10;CL:1000494,3.50e-08,10;CL:0000077,1.50e-07,19;CL:0002681,5.72e-07,12;CL:0002584,5.72e-07,12 | |||
|ontology_enrichment_development_v019=UBERON:0009143;4.85e-10;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3111;1.65e-10;1!DOID:3603;1.65e-10;1!DOID:6193;2.84e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3111,1.65e-10,1;DOID:3603,1.65e-10,1;DOID:6193,2.84e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0004211!5.75e-13!16;UBERON:0001285!5.75e-13!16;UBERON:0007684!5.75e-13!16;UBERON:0003220!5.75e-13!16;UBERON:0004208!5.75e-13!16;UBERON:0001851!6.38e-13!16;UBERON:0001225!7.81e-13!13;UBERON:0008987!7.81e-13!13;UBERON:0004876!1.81e-12!20;UBERON:0006555!4.25e-12!17;UBERON:0005103!4.25e-12!17;UBERON:0000083!4.25e-12!17;UBERON:0009201!4.25e-12!17;UBERON:0004819!4.25e-12!17;UBERON:0006553!4.25e-12!17;UBERON:0003074!4.25e-12!17;UBERON:0003060!4.25e-12!17;UBERON:0000080!2.51e-11!18;UBERON:0002120!2.51e-11!18;UBERON:0004875!2.51e-11!18;UBERON:0005721!2.51e-11!18;UBERON:0005754!2.51e-11!18;UBERON:0007297!2.51e-11!18;UBERON:0000058!6.19e-11!26;UBERON:0009773!9.21e-11!12;UBERON:0001231!9.21e-11!12;UBERON:0004810!9.21e-11!12;UBERON:0003064!2.43e-10!37;UBERON:0000353!1.78e-09!17;UBERON:0003887!1.87e-09!21;UBERON:0002113!8.82e-09!27;UBERON:0003918!8.82e-09!27;UBERON:0005095!8.82e-09!27;UBERON:0007687!8.82e-09!27;UBERON:0002066!1.55e-08!5;UBERON:0006554!3.02e-08!44;UBERON:0001008!5.35e-08!45;UBERON:0000489!4.30e-07!32;UBERON:0000074!6.03e-07!7;UBERON:0001229!6.03e-07!7;UBERON:0001230!6.03e-07!7;UBERON:0005749!6.03e-07!7;UBERON:0004199!6.03e-07!7;UBERON:0004209!6.03e-07!7;UBERON:0004198!6.03e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0001723;5.84e-13;3!UBERON:0001033;5.84e-13;3!UBERON:0002372;4.85e-10;1!UBERON:0005795;4.85e-10;1!UBERON:0001961;4.85e-10;1!UBERON:0001744;4.85e-10;1!UBERON:0001042;4.85e-10;1!UBERON:0001735;4.85e-10;1!UBERON:0006555;2.48e-09;15!UBERON:0004819;2.48e-09;15!UBERON:0001285;2.48e-09;15!UBERON:0007684;2.48e-09;15!UBERON:0002113;6.87e-09;24!UBERON:0011143;6.87e-09;24!UBERON:0004211;3.25e-08;10!UBERON:0009773;3.25e-08;10!UBERON:0001231;3.25e-08;10!UBERON:0004810;3.25e-08;10!UBERON:0000489;2.51e-07;29!UBERON:0006554;4.47e-07;30!UBERON:0001008;4.47e-07;30!UBERON:0001225;5.43e-07;12!UBERON:0008987;5.43e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001723,6.20e-13,3;UBERON:0001033,6.20e-13,3;UBERON:0010056,6.20e-13,3;UBERON:0002372,6.91e-10,1;UBERON:0001961,6.91e-10,1;UBERON:0001744,6.91e-10,1;UBERON:0001735,6.91e-10,1;UBERON:0004211,2.53e-09,15;UBERON:0009773,2.53e-09,15;UBERON:0001231,2.53e-09,15;UBERON:0001285,2.53e-09,15;UBERON:0007684,2.53e-09,15;UBERON:0004208,2.53e-09,15;UBERON:0006555,9.46e-09,16;UBERON:0004819,9.46e-09,16;UBERON:0001042,1.68e-08,10;UBERON:0009145,1.68e-08,10;UBERON:0006554,2.78e-08,47;UBERON:0000161,2.93e-08,36;UBERON:0002113,3.47e-08,26;UBERON:0003918,3.47e-08,26;UBERON:0011143,3.47e-08,26;UBERON:0005095,3.47e-08,26;UBERON:0007687,3.47e-08,26;UBERON:0004810,3.50e-08,10;UBERON:0001008,4.28e-08,48;UBERON:0006562,9.04e-08,11;UBERON:0001225,5.72e-07,12;UBERON:0008987,5.72e-07,12;UBERON:0000489,7.78e-07,31 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,2.79120467188971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0,0.728590576585084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357198913136319,0.22452937262617,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0.98667019366864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0,0.22001485746285,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0.299918973546171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56537681191024,0,0,0,1.35359883872224,0.0770153371044148,1.56869953835371,0,0,0,0,0.431831832204279,0,2.16757150035082,0.501689773854853,0,0.831076008928724,0.223874754722178,0,0,0,0,0,0.103041011647722,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.38126038784765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0,0,0,0,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,7.1572127655407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0.718946809178615,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.64905114129346,2.77020930613669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277349346026277,0,0.0979923974143777,0.0870592065804026,0,3.61170668190395,0,0,0,2.23074737923365,0,0,0.137041924646751,0,0,0,0.320635281006135,0,0,0,0,0,0,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,2.85120908602398,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.963099152036517,0,1.30497145982606,2.493765180635,0.694567422971502,0,0,0.926404341482917,0,3.88716121080938,4.24410884196013,0,0,0,0.607719912354764,0,0,0,0,0,0,15.2144728818211,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.690359926060101,0,0,0.40341013740704,0,0,0,0.147856086217045,0,0,0,0,0,0,0.992422356778588,0,0,0,0,0,0,0,0,0,0,0,4.13678443093889,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17071847709395,1.38251932362818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.705789743431384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,1.70587185520785,0,0,0,0,0,0,5.87835219321796,3.08009970976753,2.1552656964668,0.143444410785353,0,0,0.213454691755431,0,0,0,0,2.84827324821017,0,0,0 | |||
|short_description=p4@LRRC20 | |||
}} |
Revision as of 03:19, 11 January 2014
Short description: | p4@LRRC20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_LRRC20_5end |
Coexpression cluster: | NA |
Association with transcript: | -253bp_to_CU692838, HQ448301_5end |
EntrezGene: | LRRC20 |
HGNC: | 23421 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of nephron | 2.53e-09 | 15 |
kidney cell | 3.03e-08 | 17 |
kidney epithelial cell | 3.03e-08 | 17 |
kidney tubule cell | 3.50e-08 | 10 |
nephron tubule epithelial cell | 3.50e-08 | 10 |
mesothelial cell | 1.50e-07 | 19 |
kidney cortical cell | 5.72e-07 | 12 |
renal cortical epithelial cell | 5.72e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
tongue | 6.20e-13 | 3 |
gustatory system | 6.20e-13 | 3 |
future tongue | 6.20e-13 | 3 |
tonsil | 6.91e-10 | 1 |
mucosa-associated lymphoid tissue | 6.91e-10 | 1 |
lymphoid tissue | 6.91e-10 | 1 |
tonsillar ring | 6.91e-10 | 1 |
nephron epithelium | 2.53e-09 | 15 |
renal tubule | 2.53e-09 | 15 |
nephron tubule | 2.53e-09 | 15 |
nephron | 2.53e-09 | 15 |
uriniferous tubule | 2.53e-09 | 15 |
nephrogenic mesenchyme | 2.53e-09 | 15 |
excretory tube | 9.46e-09 | 16 |
kidney epithelium | 9.46e-09 | 16 |
chordate pharynx | 1.68e-08 | 10 |
pharyngeal region of foregut | 1.68e-08 | 10 |
urinary system structure | 2.78e-08 | 47 |
orifice | 2.93e-08 | 36 |
kidney | 3.47e-08 | 26 |
kidney mesenchyme | 3.47e-08 | 26 |
upper urinary tract | 3.47e-08 | 26 |
kidney rudiment | 3.47e-08 | 26 |
kidney field | 3.47e-08 | 26 |
nephron tubule epithelium | 3.50e-08 | 10 |
renal system | 4.28e-08 | 48 |
pharynx | 9.04e-08 | 11 |
cortex of kidney | 5.72e-07 | 12 |
renal parenchyma | 5.72e-07 | 12 |
cavitated compound organ | 7.78e-07 | 31 |
Ontology term | p-value | n |
---|---|---|
cystadenocarcinoma | 1.65e-10 | 1 |
mucinous cystadenocarcinoma | 1.65e-10 | 1 |
epithelioid sarcoma | 2.84e-10 | 1 |