FFCP PHASE1:Hg19::chr11:31839488..31839515,-: Difference between revisions
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{{FFCP | |||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5080 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
| | |||
Revision as of 07:05, 11 January 2014
| Short description: | p3@PAX6 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_3_at_PAX6_5end |
| Coexpression cluster: | C3140_argyrophil_Lens_Ciliary_eye_small_Astrocyte_Iris |
| Association with transcript: | 0bp_to_ENST00000379129, ENST00000379132, ENST00000419022, ENST00000423822, ENST00000532175, NM_001127612, uc009yjr.2_5end |
| EntrezGene: | PAX6 |
| HGNC: | 8620 |
| UniProt: | P26367B1B1I9Q66SS1 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p3@PAX6 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| crystallin accumulating cell | 5.15e-10 | 4 |
| vertebrate lens cell | 5.15e-10 | 4 |
| lens epithelial cell | 5.15e-10 | 4 |
| ciliated cell | 1.16e-08 | 3 |
| ciliated epithelial cell | 1.16e-08 | 3 |
| multi-ciliated epithelial cell | 1.16e-08 | 3 |
| non-pigmented ciliary epithelial cell | 1.16e-08 | 3 |
| astrocyte of the cerebral cortex | 2.02e-08 | 3 |
| oligodendrocyte | 4.57e-08 | 7 |
| macroglial cell | 4.57e-08 | 7 |
Showing 1 to 10 of 16 entries
| Ontology term | p-value | n |
|---|---|---|
| neural plate | 3.26e-108 | 82 |
| presumptive neural plate | 3.26e-108 | 82 |
| neural tube | 3.51e-105 | 56 |
| neural rod | 3.51e-105 | 56 |
| future spinal cord | 3.51e-105 | 56 |
| neural keel | 3.51e-105 | 56 |
| neurectoderm | 2.11e-102 | 86 |
| regional part of nervous system | 2.71e-98 | 53 |
| regional part of brain | 2.71e-98 | 53 |
| central nervous system | 5.05e-96 | 81 |
Showing 1 to 10 of 83 entries
