FFCP PHASE1:Hg19::chr12:57328113..57328161,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=121214 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29958 | |||
|TSSclassifier=strong | |||
|UniProt=Q8NEX9 | |||
|association_with_transcript=27bp_to_ENST00000293502,NM_148897_5end | |||
|coexpression_cluster_id=C820 | |||
|description=CAGE_peak_2_at_SDR9C7_5end | |||
|id=chr12:57328113..57328161,- | |||
|ontology_enrichment_celltype=CL:0001014!1.18e-13!2;CL:0001016!1.18e-13!2;CL:0000575!1.33e-13!2;CL:0000622!7.76e-12!5;CL:0002159!1.72e-11!13;CL:0000154!6.06e-10!6;CL:0002623!2.15e-09!3;CL:0000362!3.49e-07!8;CL:0000244!4.35e-07!4;CL:0000731!4.35e-07!4;CL:0000150!9.01e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000575;4.04e-31;2!CL:0001014;4.52e-09;2!CL:0001016;4.52e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000575,5.50e-31,2;CL:0001014,4.34e-09,2;CL:0001016,4.34e-09,2 | |||
|ontology_enrichment_development_v019=UBERON:0008814;4.01e-09;2!UBERON:0010056;4.01e-09;2 | |||
|ontology_enrichment_disease=DOID:3151!7.03e-08!1;DOID:3149!7.03e-08!1 | |||
|ontology_enrichment_disease_v019=DOID:3151;5.52e-17;1!DOID:3149;5.52e-17;1!DOID:3451;3.71e-09;2!DOID:4159;3.71e-09;2!DOID:0060122;3.71e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,5.53e-17,1;DOID:3149,5.53e-17,1;DOID:3451,3.71e-09,2;DOID:4159,3.71e-09,2;DOID:0060122,3.71e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0001042!3.60e-10!10;UBERON:0009145!3.60e-10!10;UBERON:0001723!1.90e-09!3;UBERON:0001033!1.90e-09!3;UBERON:0010056!1.90e-09!3;UBERON:0006562!2.96e-09!11;UBERON:0000078!1.26e-08!18;UBERON:0002372!9.71e-08!1;UBERON:0001961!9.71e-08!1;UBERON:0001744!9.71e-08!1;UBERON:0001735!9.71e-08!1;UBERON:0007029!1.33e-07!1;UBERON:0000166!2.36e-07!21;UBERON:0000014!2.58e-07!4;UBERON:0006834!2.83e-07!1;UBERON:0000964!3.21e-07!4;UBERON:0004348!3.21e-07!4;UBERON:0005427!3.21e-07!4;UBERON:0001874!4.09e-07!1;UBERON:0003102!4.20e-07!95;UBERON:0001003!5.14e-07!14;UBERON:0007376!5.14e-07!14;UBERON:0007383!5.14e-07!14;UBERON:0001043!5.22e-07!4;UBERON:0009143!5.22e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0001723;2.06e-21;3!UBERON:0001033;2.06e-21;3!UBERON:0002372;1.78e-16;1!UBERON:0005795;1.78e-16;1!UBERON:0007029;1.78e-16;1!UBERON:0001961;1.78e-16;1!UBERON:0001744;1.78e-16;1!UBERON:0001042;1.78e-16;1!UBERON:0001735;1.78e-16;1!UBERON:0000014;2.35e-16;4!UBERON:0000964;4.18e-16;4!UBERON:0010409;4.18e-16;4!UBERON:0000002;2.98e-11;6!UBERON:0001560;2.98e-11;6!UBERON:0000020;6.45e-11;23!UBERON:0001032;1.79e-10;24!UBERON:0004456;1.79e-10;24!UBERON:0000165;4.62e-09;28!UBERON:0006562;6.67e-09;2!UBERON:0000033;1.68e-08;50!UBERON:0007811;2.06e-07;52!UBERON:0010313;5.42e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001723,2.96e-21,3;UBERON:0001033,2.96e-21,3;UBERON:0010056,2.96e-21,3;UBERON:0002372,1.21e-16,1;UBERON:0001961,1.21e-16,1;UBERON:0001744,1.21e-16,1;UBERON:0001735,1.21e-16,1;UBERON:0007029,2.63e-16,1;UBERON:0000014,2.85e-16,4;UBERON:0000964,4.87e-16,4;UBERON:0010409,4.87e-16,4;UBERON:0004348,4.87e-16,4;UBERON:0005427,4.87e-16,4;UBERON:0001042,2.33e-14,10;UBERON:0009145,2.33e-14,10;UBERON:0006562,4.11e-13,11;UBERON:0000166,1.93e-11,22;UBERON:0000002,2.91e-11,6;UBERON:0001560,2.91e-11,6;UBERON:0001444,5.82e-11,49;UBERON:0000020,2.05e-10,24;UBERON:0001032,2.05e-10,24;UBERON:0004456,2.05e-10,24;UBERON:0000033,1.46e-09,56;UBERON:0003102,3.29e-09,99;UBERON:0000165,9.59e-09,29;UBERON:0000930,9.59e-09,29;UBERON:0000153,1.31e-08,62;UBERON:0007811,1.31e-08,62;UBERON:0001557,7.81e-08,19;UBERON:0000161,4.35e-07,36;UBERON:0010313,5.76e-07,10;UBERON:0002342,5.76e-07,10;UBERON:0005062,5.76e-07,10;UBERON:0005795,7.03e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45718115317017,1.48313777113772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0.201057944823262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0,0,0,1.7737206141467,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.55291598109435,1.61595542857974,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.581934098930517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.674921674654501,2.32140586367385,0,5.36695500158826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0.6828739083758,2.07377898544228,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45713297917742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426467963801962,0,0.193766729508018,0,0,0,0,4.78976845373315,1.36893320434112,1.68380132536469,0.215166616178029,0,0,0,0,0,0,0.244482888365733,1.62758471326295,0,0,0 | |||
|short_description=p2@SDR9C7 | |||
}} |
Revision as of 14:05, 11 January 2014
Short description: | p2@SDR9C7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SDR9C7_5end |
Coexpression cluster: | C820_cervical_tongue_esophagus_throat_tonsil_oral_uterus |
Association with transcript: | 27bp_to_ENST00000293502, NM_148897_5end |
EntrezGene: | SDR9C7 |
HGNC: | 29958 |
UniProt: | Q8NEX9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
corneal epithelial cell | 5.50e-31 | 2 |
CD1a-positive Langerhans cell | 4.34e-09 | 2 |
immature CD1a-positive Langerhans cell | 4.34e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
tongue | 2.96e-21 | 3 |
gustatory system | 2.96e-21 | 3 |
future tongue | 2.96e-21 | 3 |
tonsil | 1.21e-16 | 1 |
mucosa-associated lymphoid tissue | 1.21e-16 | 1 |
lymphoid tissue | 1.21e-16 | 1 |
tonsillar ring | 1.21e-16 | 1 |
surface | 2.63e-16 | 1 |
zone of skin | 2.85e-16 | 4 |
cornea | 4.87e-16 | 4 |
eye surface | 4.87e-16 | 4 |
optic eminence | 4.87e-16 | 4 |
corneal primordium | 4.87e-16 | 4 |
chordate pharynx | 2.33e-14 | 10 |
pharyngeal region of foregut | 2.33e-14 | 10 |
pharynx | 4.11e-13 | 11 |
oral opening | 1.93e-11 | 22 |
uterine cervix | 2.91e-11 | 6 |
neck of organ | 2.91e-11 | 6 |
subdivision of head | 5.82e-11 | 49 |
sense organ | 2.05e-10 | 24 |
sensory system | 2.05e-10 | 24 |
entire sense organ system | 2.05e-10 | 24 |
head | 1.46e-09 | 56 |
surface structure | 3.29e-09 | 99 |
mouth | 9.59e-09 | 29 |
stomodeum | 9.59e-09 | 29 |
anterior region of body | 1.31e-08 | 62 |
craniocervical region | 1.31e-08 | 62 |
upper respiratory tract | 7.81e-08 | 19 |
orifice | 4.35e-07 | 36 |
neural crest-derived structure | 5.76e-07 | 10 |
neural crest | 5.76e-07 | 10 |
neural fold | 5.76e-07 | 10 |
embryonic uterus | 7.03e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 5.53e-17 | 1 |
keratoacanthoma | 5.53e-17 | 1 |
skin carcinoma | 3.71e-09 | 2 |
skin cancer | 3.71e-09 | 2 |
integumentary system cancer | 3.71e-09 | 2 |