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FFCP PHASE1:Hg19::chr13:20806445..20806465,-: Difference between revisions

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{{FFCP|DPIdataset=robustDPI|EntrezGene=10804|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4288|TSSclassifier=S|UniProt=O95452|association_with_transcript=-3bp_to_ENST00000400065_5end|coexpression_cluster_id=C3356|description=CAGE_peak_1_at_GJB6_5end|id=chr13:20806445..20806465,-|ontology_enrichment_celltype=CL:0002076!2.71e-10!43;CL:0002159!2.17e-07!13;CL:0002057!5.57e-07!42;CL:0002368!6.88e-07!13|ontology_enrichment_celltype_v019=CL:0002368;1.06e-09;13!CL:0002076;3.52e-09;42!CL:0000244;2.35e-07;4!CL:0000731;2.35e-07;4!CL:0002159;5.91e-07;14|ontology_enrichment_celltype_v019_2=CL:0002076,5.10e-12,42;CL:0002368,1.05e-09,13;CL:0000223,1.71e-07,58;CL:0000244,2.35e-07,4;CL:0000731,2.35e-07,4;CL:0002159,5.90e-07,14|ontology_enrichment_development_v019=UBERON:0006601;7.58e-11;82|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.28e-27!57;UBERON:0005068!1.28e-27!57;UBERON:0006241!1.28e-27!57;UBERON:0007135!1.28e-27!57;UBERON:0007023!9.61e-24!115;UBERON:0002616!9.35e-22!59;UBERON:0002780!5.51e-21!41;UBERON:0001890!5.51e-21!41;UBERON:0006240!5.51e-21!41;UBERON:0000153!5.95e-21!129;UBERON:0007811!5.95e-21!129;UBERON:0003080!3.73e-20!42;UBERON:0000955!6.13e-19!69;UBERON:0006238!6.13e-19!69;UBERON:0001017!6.20e-19!82;UBERON:0000033!9.46e-19!123;UBERON:0002020!1.57e-18!34;UBERON:0003528!1.57e-18!34;UBERON:0001893!1.99e-18!34;UBERON:0005743!5.65e-18!86;UBERON:0002791!1.07e-17!33;UBERON:0001869!2.51e-17!32;UBERON:0003075!5.15e-17!86;UBERON:0007284!5.15e-17!86;UBERON:0002619!1.48e-15!22;UBERON:0002346!2.07e-15!90;UBERON:0000073!2.28e-15!94;UBERON:0001016!2.28e-15!94;UBERON:0004121!7.36e-15!169;UBERON:0001950!3.58e-14!20;UBERON:0000924!6.54e-14!173;UBERON:0006601!6.54e-14!173;UBERON:0000956!8.99e-13!25;UBERON:0000203!8.99e-13!25;UBERON:0003056!9.78e-13!61;UBERON:0003076!1.30e-08!15;UBERON:0003057!1.30e-08!15;UBERON:0002308!2.24e-07!9;UBERON:0000125!2.24e-07!9;UBERON:0002420!2.29e-07!9;UBERON:0007245!2.29e-07!9;UBERON:0010009!2.29e-07!9;UBERON:0010011!2.29e-07!9;UBERON:0000454!2.29e-07!9;UBERON:0004732!2.99e-07!13|ontology_enrichment_uberon_v019=UBERON:0001893;2.75e-22;34!UBERON:0003528;3.98e-22;34!UBERON:0002020;3.98e-22;34!UBERON:0001869;6.43e-22;32!UBERON:0002791;1.02e-21;32!UBERON:0002619;1.84e-21;22!UBERON:0002780;1.23e-20;41!UBERON:0001890;1.23e-20;41!UBERON:0000073;1.56e-20;53!UBERON:0002616;1.56e-20;53!UBERON:0001950;1.57e-19;20!UBERON:0000956;3.71e-18;25!UBERON:0000203;3.71e-18;25!UBERON:0000955;2.13e-13;68!UBERON:0001017;2.86e-13;75!UBERON:0001016;5.08e-11;83!UBERON:0000125;1.03e-09;9!UBERON:0002308;1.03e-09;9!UBERON:0002420;1.19e-09;9!UBERON:0007245;1.19e-09;9!UBERON:0010009;1.19e-09;9!UBERON:0010011;1.19e-09;9!UBERON:0000454;1.19e-09;9!UBERON:0004732;1.43e-08;13!UBERON:0000365;1.45e-08;5!UBERON:0002298;4.72e-08;6!UBERON:0009663;1.02e-07;7!UBERON:0007023;1.10e-07;114!UBERON:0004733;1.36e-07;12!UBERON:0002028;1.36e-07;12!UBERON:0000200;1.80e-07;6!UBERON:0005910;5.58e-07;6|ontology_enrichment_uberon_v019_2=UBERON:0001049,5.64e-38,56;UBERON:0005068,5.64e-38,56;UBERON:0006241,5.64e-38,56;UBERON:0007135,5.64e-38,56;UBERON:0000073,6.93e-35,53;UBERON:0002616,6.93e-35,53;UBERON:0010371,3.87e-29,104;UBERON:0002780,1.54e-28,41;UBERON:0001890,1.54e-28,41;UBERON:0003080,1.54e-28,41;UBERON:0006240,1.54e-28,41;UBERON:0001017,6.13e-28,81;UBERON:0000955,7.28e-28,68;UBERON:0006238,7.28e-28,68;UBERON:0003075,1.79e-26,82;UBERON:0007284,1.79e-26,82;UBERON:0003528,2.22e-26,34;UBERON:0002020,2.22e-26,34;UBERON:0001893,3.13e-26,34;UBERON:0001016,7.91e-25,89;UBERON:0001869,1.13e-24,32;UBERON:0007023,1.50e-24,114;UBERON:0002346,1.74e-24,86;UBERON:0002791,2.15e-24,32;UBERON:0002619,1.61e-21,22;UBERON:0003056,6.51e-21,61;UBERON:0004121,9.57e-21,171;UBERON:0000924,9.57e-21,171;UBERON:0006601,9.57e-21,171;UBERON:0001950,1.44e-19,20;UBERON:0000956,3.31e-18,25;UBERON:0000203,3.31e-18,25;UBERON:0010314,2.09e-16,132;UBERON:0011216,5.74e-14,223;UBERON:0003076,2.08e-10,15;UBERON:0003057,2.08e-10,15;UBERON:0000125,9.40e-10,9;UBERON:0002308,9.40e-10,9;UBERON:0002420,9.74e-10,9;UBERON:0007245,9.74e-10,9;UBERON:0010009,9.74e-10,9;UBERON:0010011,9.74e-10,9;UBERON:0000454,9.74e-10,9;UBERON:0000365,1.45e-08,5;UBERON:0004732,1.54e-08,13;UBERON:0002298,5.10e-08,6;UBERON:0009663,8.94e-08,7;UBERON:0004733,1.46e-07,12;UBERON:0002028,1.46e-07,12;UBERON:0007277,1.46e-07,12;UBERON:0000200,1.90e-07,6;UBERON:0005910,5.59e-07,6|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0.527533956456907,0,0,0,0,0,0,0,0,0.940364164434263,0,0,0,0,0,0,0.393364276848904,0.383829398097213,0.309632246632152,12.871897142705,28.3133563651555,17.378438477839,0,0,0,2.21598163412751,2.60707781711184,1.30206522429511,0,0,0.257575567634187,1.01778767145695,1.13362783106643,0.242584061187816,1.39457422143411,0.822335776043652,0,1.1507695692886,0.512321413058201,0.236482229888585,3.44745680736619,0,1.35426486594342,2.07066573496865,0.818718450173537,1.12361742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{{FFCP
|DHSsupport=supported
|DPIdataset=robust
|EntrezGene=10804
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding
|HGNC=4288
|TSSclassifier=strong
|UniProt=O95452
|association_with_transcript=-3bp_to_ENST00000400065_5end
|coexpression_cluster_id=C3356
|description=CAGE_peak_1_at_GJB6_5end
|id=chr13:20806445..20806465,-
|ontology_enrichment_celltype=CL:0002076!2.71e-10!43;CL:0002159!2.17e-07!13;CL:0002057!5.57e-07!42;CL:0002368!6.88e-07!13
|ontology_enrichment_celltype_v019=CL:0002368;1.06e-09;13!CL:0002076;3.52e-09;42!CL:0000244;2.35e-07;4!CL:0000731;2.35e-07;4!CL:0002159;5.91e-07;14
|ontology_enrichment_celltype_v019_2=CL:0002076,5.10e-12,42;CL:0002368,1.05e-09,13;CL:0000223,1.71e-07,58;CL:0000244,2.35e-07,4;CL:0000731,2.35e-07,4;CL:0002159,5.90e-07,14
|ontology_enrichment_development_v019=UBERON:0006601;7.58e-11;82
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019=
|ontology_enrichment_disease_v019_2=
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|short_description=p1@GJB6
}}

Revision as of 16:53, 11 January 2014

Short description:p1@GJB6
Species:Human (Homo sapiens)
DPI dataset: Robust
TSS-like-by-RIKEN-classifier(Yes/No): Yes
DHS support(Yes/No): Yes
Description: CAGE_peak_1_at_GJB6_5end
Coexpression cluster:C3356_Urothelial_cervical_tongue_Neutrophils_keratoacanthoma_uterus_Sebocyte
Association with transcript: -3bp_to_ENST00000400065_5end
EntrezGene:GJB6
HGNC: 4288
UniProt: O95452
Genome view:ZENBU


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CAGE Expression




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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data