FFCP PHASE1:Hg19::chr15:67458861..67458879,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4088 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6769 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000558428,ENST00000558827_5end | |||
|description=CAGE_peak_17_at_SMAD3_5end | |||
|id=chr15:67458861..67458879,+ | |||
|ontology_enrichment_celltype=CL:0002321!1.39e-13!248;CL:0000220!2.12e-13!246;CL:0000187!3.91e-11!54;CL:0000359!6.28e-11!32;CL:0000393!7.97e-11!60;CL:0000211!7.97e-11!60;CL:0000192!1.97e-10!42;CL:0000514!1.97e-10!42;CL:0000680!4.32e-10!57;CL:0000056!4.32e-10!57;CL:0000355!4.32e-10!57;CL:0002494!1.80e-09!16;CL:0000183!1.84e-09!59;CL:0002368!2.22e-09!13;CL:0000222!1.84e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000359;3.08e-23;32!CL:0000244;6.70e-14;4!CL:0000731;6.70e-14;4!CL:0000192;2.45e-13;43!CL:0002595;2.33e-11;5!CL:0002621;1.09e-10;3!CL:0002592;2.56e-10;3!CL:0000307;1.07e-09;3!CL:0002202;2.90e-08;9!CL:0002632;2.90e-08;9!CL:0000575;3.02e-08;2!CL:0002596;6.95e-08;2!CL:0002589;8.21e-08;2!CL:0000187;2.16e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,5.03e-25,32;CL:0000192,1.66e-17,43;CL:0000514,1.66e-17,43;CL:0000244,7.17e-14,4;CL:0000731,7.17e-14,4;CL:0000187,9.13e-13,55;CL:0000680,6.83e-12,58;CL:0000056,6.83e-12,58;CL:0000355,6.83e-12,58;CL:0002595,2.10e-11,5;CL:0000393,4.17e-11,61;CL:0000211,4.17e-11,61;CL:0002621,1.35e-10,3;CL:0002321,2.44e-10,250;CL:0002592,3.32e-10,3;CL:0000068,1.63e-09,3;CL:0000069,1.63e-09,3;CL:0000307,1.63e-09,3;CL:0000377,1.63e-09,3;CL:0000575,3.03e-08,2;CL:0002202,3.13e-08,9;CL:0002632,3.13e-08,9;CL:0002589,7.31e-08,2;CL:0002596,7.82e-08,2;CL:0002076,6.55e-07,42 | |||
|ontology_enrichment_development_v019=CL:0000514;2.45e-13;43!CL:0000377;1.07e-09;3!CL:0000355;3.23e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!1.84e-11!82;UBERON:0001134!9.33e-11!61;UBERON:0002036!9.33e-11!61;UBERON:0003082!9.33e-11!61;UBERON:0002385!4.01e-10!63;UBERON:0001015!4.01e-10!63;UBERON:0000383!4.01e-10!63;UBERON:0004535!1.16e-09!110;UBERON:0001009!4.42e-09!113;UBERON:0001637!2.26e-08!42;UBERON:0003509!2.26e-08!42;UBERON:0004572!2.26e-08!42;UBERON:0002049!2.31e-08!79;UBERON:0007798!2.31e-08!79;UBERON:0000119!2.37e-08!312;UBERON:0004290!3.15e-08!70;UBERON:0004573!8.60e-08!33;UBERON:0004571!8.60e-08!33;UBERON:0004872!9.22e-08!84;UBERON:0000914!1.61e-07!83;UBERON:0002329!1.61e-07!83;UBERON:0003077!1.61e-07!83;UBERON:0003059!1.61e-07!83;UBERON:0007282!1.61e-07!83;UBERON:0009618!1.61e-07!83;UBERON:0007285!1.61e-07!83;UBERON:0000483!2.35e-07!309;UBERON:0000490!2.95e-07!138;UBERON:0000481!3.45e-07!347;UBERON:0003103!4.02e-07!69;UBERON:0000948!6.11e-07!24;UBERON:0005498!6.11e-07!24;UBERON:0004140!6.11e-07!24;UBERON:0009881!6.11e-07!24;UBERON:0004141!6.11e-07!24;UBERON:0003084!6.11e-07!24;UBERON:0007005!6.11e-07!24;UBERON:0004139!6.11e-07!24;UBERON:0004291!6.11e-07!24;UBERON:0003914!9.46e-07!118 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;8.82e-14;33!UBERON:0004571;8.82e-14;33!UBERON:0000486;7.18e-13;12!UBERON:0003834;2.33e-11;5!UBERON:0001533;2.33e-11;5!UBERON:0000365;4.02e-11;5!UBERON:0001949;1.09e-10;3!UBERON:0001637;1.21e-10;42!UBERON:0003509;1.21e-10;42!UBERON:0004572;1.21e-10;42!UBERON:0003498;2.56e-10;3!UBERON:0005985;2.56e-10;3!UBERON:0001621;2.56e-10;3!UBERON:0005910;2.89e-09;6!UBERON:0003513;4.22e-08;7!UBERON:0005396;6.95e-08;2!UBERON:0001529;8.21e-08;2!UBERON:0007204;8.21e-08;2!UBERON:0003126;3.55e-07;7!UBERON:0001005;3.55e-07;7!UBERON:0007196;8.81e-07;15!UBERON:0001558;8.81e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,4.60e-18,83;UBERON:0004573,3.01e-16,33;UBERON:0004571,3.01e-16,33;UBERON:0001637,6.46e-16,42;UBERON:0003509,6.46e-16,42;UBERON:0004572,6.46e-16,42;UBERON:0001134,2.02e-12,62;UBERON:0002036,2.02e-12,62;UBERON:0003082,2.02e-12,62;UBERON:0002385,6.79e-12,64;UBERON:0001015,6.79e-12,64;UBERON:0000383,6.79e-12,64;UBERON:0003834,2.10e-11,5;UBERON:0001533,2.10e-11,5;UBERON:0000365,4.25e-11,5;UBERON:0001949,1.35e-10,3;UBERON:0002329,2.70e-10,71;UBERON:0003059,2.70e-10,71;UBERON:0007282,2.70e-10,71;UBERON:0004290,2.70e-10,71;UBERON:0009618,2.70e-10,71;UBERON:0007500,3.26e-10,59;UBERON:0001981,3.26e-10,59;UBERON:0004537,3.26e-10,59;UBERON:0006965,3.26e-10,59;UBERON:0001621,3.32e-10,3;UBERON:0003077,4.31e-10,72;UBERON:0007285,4.31e-10,72;UBERON:0007524,6.77e-10,73;UBERON:0005910,3.02e-09,6;UBERON:0007503,5.44e-09,78;UBERON:0000055,2.25e-08,68;UBERON:0004872,3.28e-08,83;UBERON:0003513,3.92e-08,7;UBERON:0001529,7.31e-08,2;UBERON:0007204,7.31e-08,2;UBERON:0005396,7.82e-08,2;UBERON:0002049,7.92e-08,78;UBERON:0007798,7.92e-08,78;UBERON:0003126,4.35e-07,7;UBERON:0001005,4.35e-07,7;UBERON:0004535,7.85e-07,109;UBERON:0007196,9.13e-07,15;UBERON:0001558,9.13e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10808952269109,1.22400414746552,0,0,0,0,0,0,0,0,0,0,0.919421224478927,1.8072355126695,2.21852406100073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.12786256184353,1.0843174571537,0,0.434539556882471,0,0.486634870302636,0,0,0.087834785693126,0.0654895377488563,12.750335090239,11.1235332835329,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0,0,0,0,0,0,0,0,0,0.17859945656816,0,0.225222960966644,0,0,0.916008719652036,0,0,3.92484646928281,0,0.759783069987479,0.264818361626438,0,0.354668382198357,0,2.1349799145941,0.24666754841716,0.311211035399766,0.134710672069688,0.326923806226917,0.454072282934794,0,0,0,0,0,0,0,0,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0.323292113637624,0,0,0,2.12586938479627,4.09119180886252,4.30206893083506,0.121973706129595,0,0.232387885739037,0.518305275076852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.514703430895577,0.109750285408626,1.1240175325762,0.603173834469785,3.51836091602412,0,0,0,0.115930404975077,0.234817388471643,0,0.462985512576611,0,0,0,0,0,0,0.93733833986777,0.335964256397719,1.13420077793909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336393253036082,14.8226423403315,0.5867062865676,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0.301439377059586,0,0.099972991182057,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0.664225598535437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0.246381468041427,0.519254429183621,0.116210378459959,0,0.200506470303285,0,0.114814448164607,0.364182336013434,0.655622074797121,0.451199612907412,0.0770153371044148,0,1.46139224653261,0.422206515571503,0,0,0,0,0,0,0,0,0.671624264166535,0,0,0,0,0,0,0,0,0,1.30012049207304,0,0,0.154048617114644,0.15350367472613,0,0,0.145016693914229,0.170453254832202,0,0.991709492165869,0.192190067365106,0.765676274967505,0.2023155617111,1.39453664789186,0,0,2.7723022215848,1.06461206063404,0,3.89180860118232,5.43874569619567,0.744316738719335,0.316379424718726,1.14378116354295,0.255897791311334,0,3.18203247925937,7.06453776179307,0,0.274537029736055,0,2.62837226045311,3.17020642346017,2.10629228119491,0,5.36169677188826,0,0.136499911407986,0.565621727814851,0,2.75682671773062,17.9128523315129,9.64591947558278,0,0,1.21746226177622,0,0,0,0,2.1400263088875,0,0,0,0.379473173765715,0.349934720244983,1.05844323998063,2.68120910214315,1.08890984861323,0,2.15252686335615,3.36942951335251,26.1623790586639,4.82419140434615,0,0,0,0,0,0,0,0,0.640944426764839,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0.222886768554957,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0.697118721393016,0.384751292518985,0,0,0.359030577639089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18608451472249,0,0,0,0,0,0,0,0.242780379534093,0,0,0,0.31593289814244,0.150323419414493,0,0,0.992975867626496,0,0,3.9845336444171,0,0,1.56787835863004,0,0,0,0,0,0.164230914106418,10.9597588631914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201550417460179,0,0,0,0.0824158583811665,0,0.0984274815147488,0,0,0,0,0.275078873194468,0.415440338029185,0,0.77380195455795,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0.705797459094515,0,0,0,0,0,0.568209015825267,0.50313580350515,5.33886732957922,0,3.17584939902802,0.466311601748341,0.147855149989634,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0.464033759878494,0,0,0,0,1.26184898228651,0,1.07220795687463,0,0,0,0,0.895444205407437,6.48483039038042,0,0,0,0,0,0.690860683462397,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27201740261367,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0,0.231051332300676,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,5.45832296228224,0,0,0.535701835878287,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142953088353313,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.53200186031526,0.513314034281235,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.39252483350749,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0.305966489225945,0.534434810531121,1.56221329209236,0.250707539292375,0,0,0,0,6.39701945702943,0.476128862927481,0.645889098360061,0.186224142887574,0,0,0,3.48346796635138,3.76456631193809,7.40872583160463,2.438554983351,0,0,0,1.9307228228694,0,2.34640942403454,0,0.813792356631477,0,0,0.320568492303233 | |||
|short_description=p17@SMAD3 | |||
}} |
Revision as of 00:13, 12 January 2014
Short description: | p17@SMAD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_SMAD3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000558428, ENST00000558827_5end |
EntrezGene: | SMAD3 |
HGNC: | 6769 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 5.03e-25 | 32 |
smooth muscle cell | 1.66e-17 | 43 |
smooth muscle myoblast | 1.66e-17 | 43 |
transitional epithelial cell | 7.17e-14 | 4 |
urothelial cell | 7.17e-14 | 4 |
muscle cell | 9.13e-13 | 55 |
muscle precursor cell | 6.83e-12 | 58 |
myoblast | 6.83e-12 | 58 |
multi-potent skeletal muscle stem cell | 6.83e-12 | 58 |
smooth muscle cell of the subclavian artery | 2.10e-11 | 5 |
electrically responsive cell | 4.17e-11 | 61 |
electrically active cell | 4.17e-11 | 61 |
gingival epithelial cell | 1.35e-10 | 3 |
embryonic cell | 2.44e-10 | 250 |
smooth muscle cell of the coronary artery | 3.32e-10 | 3 |
duct epithelial cell | 1.63e-09 | 3 |
branched duct epithelial cell | 1.63e-09 | 3 |
tracheal epithelial cell | 1.63e-09 | 3 |
tracheoblast | 1.63e-09 | 3 |
corneal epithelial cell | 3.03e-08 | 2 |
epithelial cell of tracheobronchial tree | 3.13e-08 | 9 |
epithelial cell of lower respiratory tract | 3.13e-08 | 9 |
smooth muscle cell of the brachiocephalic vasculature | 7.31e-08 | 2 |
smooth muscle cell of the carotid artery | 7.82e-08 | 2 |
endo-epithelial cell | 6.55e-07 | 42 |