FFCP PHASE1:Hg19::chr17:41323204..41323250,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4077 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6746 | |||
|TSSclassifier=strong | |||
|UniProt=Q14596,F8W799,B7Z4J4,B7Z5R6 | |||
|association_with_transcript=0bp_to_ENST00000341165,ENST00000389311,ENST00000389312,ENST00000537493,ENST00000542611,NM_005899,uc010whu.1,uc010whv.1,uc010whw.1_5end | |||
|description=CAGE_peak_1_at_NBR1_5end | |||
|id=chr17:41323204..41323250,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.85e-34!115;UBERON:0001049!4.23e-10!57;UBERON:0005068!4.23e-10!57;UBERON:0006241!4.23e-10!57;UBERON:0007135!4.23e-10!57;UBERON:0000955!1.32e-08!69;UBERON:0006238!1.32e-08!69;UBERON:0002616!1.53e-08!59;UBERON:0003080!2.53e-08!42;UBERON:0000153!2.74e-08!129;UBERON:0007811!2.74e-08!129;UBERON:0002780!6.81e-08!41;UBERON:0001890!6.81e-08!41;UBERON:0006240!6.81e-08!41;UBERON:0000033!1.00e-07!123;UBERON:0000468!3.30e-07!659;UBERON:0000062!4.59e-07!511;UBERON:0000475!5.35e-07!365;UBERON:0001017!6.83e-07!82;UBERON:0005743!9.76e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;2.70e-09;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.11e-34,114;UBERON:0001049,1.13e-09,56;UBERON:0005068,1.13e-09,56;UBERON:0006241,1.13e-09,56;UBERON:0007135,1.13e-09,56;UBERON:0000073,1.94e-08,53;UBERON:0002616,1.94e-08,53;UBERON:0000955,3.13e-08,68;UBERON:0006238,3.13e-08,68;UBERON:0002780,6.81e-08,41;UBERON:0001890,6.81e-08,41;UBERON:0003080,6.81e-08,41;UBERON:0006240,6.81e-08,41;UBERON:0010314,3.14e-07,132;UBERON:0011216,8.56e-07,223 | |||
|phase1_expression=67.7660354679176,44.5329089693245,66.2485699251064,43.0315182918461,47.8248371037198,64.5530507834273,22.796989035148,37.271472532183,29.7751616147816,16.9556416186041,11.1648186875588,22.7179027015379,29.0143676051299,72.1557837757072,91.1342783251768,75.9727415490506,68.7071761947334,75.2219393098994,66.8467934342995,22.1617904538218,27.7440940092184,22.2552852249442,43.2216340567896,34.7661039685126,24.6063573605813,19.2561782484837,15.2707096376899,17.0015287637547,47.2037132218685,51.0493099469293,33.2854665129563,25.74379428541,33.4338569843858,41.4124491386802,12.9370224969104,6.82412315939623,19.6712294354348,34.3477153289764,23.2631559065364,34.0707067023887,79.2660778809332,62.1875838756441,80.8787282371346,65.4292074508041,41.1884778620802,49.9723166046901,57.4099721157041,30.0152558255933,23.5376841880279,21.8646218164834,14.6011602721587,13.7159693335379,29.3033828626126,16.7826017731795,18.9597081232078,51.3901586951311,40.1172040585033,41.1243976534505,43.7699966090391,26.3161802202397,30.0488449125549,45.8493307259535,21.7415386807579,27.2783840340924,89.964863974861,62.9797599407165,62.9050471485531,16.8336605722018,11.9941071236646,15.6375968187684,102.312515945039,75.8651930134383,77.8497473104576,48.7999711380586,50.3872190917153,48.2214884669265,60.7697894502539,66.5283635287873,76.183928094416,37.0516566863623,43.5627523066007,47.1273516712756,26.3994366691984,34.9528711207764,26.6852776159066,29.444385357089,52.4518743017176,38.5084134769504,39.6626923670917,42.9324189540914,28.4606484554724,24.6639619535794,20.2604810906371,17.1822727152734,25.7833938971507,15.8030450865046,41.8991810342464,36.1569901729232,45.8491342768906,63.363681753067,38.1329051961301,36.9289288473092,62.3445530905316,80.215528957325,50.9668219931468,56.0480753296562,84.4908054946849,64.5580251417403,66.0701485604181,66.5973513644888,59.1389038061715,68.1037251477373,48.7862792803179,48.1573490561484,50.1770514263889,56.9945993768758,44.4535772578229,53.6058814952903,76.6649666819094,67.5358678367085,49.4823424930878,43.7207940446252,54.9599184633871,58.6178679087236,74.9584359314075,65.1137443121046,55.0155757937101,39.918135158497,37.976507801258,40.5508330871837,99.9608151887243,61.7044790927345,43.9847212741744,49.155724724301,66.1766042039374,66.0500126461356,67.5993054993434,56.4496449551058,41.6898543693539,44.3458794925128,38.0324622051236,64.4417051448746,18.9433549912122,16.3145154825149,55.4976043149508,54.5026077746706,56.7730491415554,49.3675592312058,38.3236590222686,32.6882601170017,42.5351551764749,29.2479762336082,40.2682981864809,54.8348703666289,37.3354498226816,35.2151093683286,33.4391946458897,50.1328512788498,50.1630430388261,53.5552980423472,44.3112248820062,36.4930610744886,37.8296189199663,28.6777202669778,46.1780910292603,61.9740114291514,55.2342256660378,36.1482852351464,24.5306619945413,34.1735637444526,36.0907435542902,118.602375692457,131.845289810431,17.0076680335588,72.5579049475165,56.8570997373963,68.7203648420606,37.2887606973458,46.8162264501831,30.8372680078269,32.0246987189115,30.3401084553107,62.8646291507528,60.0809597430809,41.3558614877051,56.9103927944942,73.7505183334399,33.7422861840667,48.69697198553,31.9464220064892,44.8346041655403,32.5293561243229,32.8602077067307,33.1463903817306,88.6029103246237,43.8518512803012,66.6451288583687,73.6561771514873,69.4820071272745,17.2930658768225,15.8095991199572,48.1441285908629,46.4189708724987,76.1926317581503,59.2619788189131,91.0268753523088,71.6635540984467,33.0087652995661,52.3817736211477,68.7654791995787,61.0363875339538,46.214028796998,78.8351848674058,85.0213782150576,76.680144808615,48.9451363499672,61.5801872618775,72.4484932080609,85.2382061427692,96.8259880344683,44.3761990645768,62.3655488029093,60.1940102702231,54.692821445213,56.7311930828936,60.5157696270798,22.4431619278456,23.7228285295459,27.1893826314673,29.4397396243652,21.1949514735528,18.6138453128673,67.2732989018209,74.6159488303747,33.1523811245953,78.0138119093725,64.9691533502627,43.3002888145829,45.3492816310094,32.7775000641535,41.5808277201125,42.922250486204,36.5396753431089,39.370741982768,50.4289165372139,34.6272441251751,34.6933063673585,9.81692416624121,25.1060146912154,16.1709582524096,65.912618107352,42.2615703171379,49.0355622545565,20.7487656724886,52.7620401349957,44.6076306776166,51.3631335712368,40.464631172743,28.8518150821381,59.441781791776,26.7162810354466,23.9185000614303,28.8662684050547,39.9959897164015,59.9958427545049,49.9507909253315,47.6875077953909,63.5448868463558,31.608175918371,28.3300433491308,60.0769494853249,42.354771990202,51.5750133141887,34.6815185751075,78.6156359970663,63.5152435645891,55.4367255530631,42.4325550230384,36.4213545206951,14.7798971368783,36.3640032474624,30.891889215575,33.0034693324842,29.7932142886257,40.3846607698195,43.5466805136437,42.1982809956169,32.503764744314,39.3829297053729,42.3483711559924,53.4495429019181,25.1173628933608,38.8004461261619,30.2887120440524,43.306024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| |||
|short_description=p1@NBR1 | |||
}} |
Revision as of 15:33, 20 January 2014
Short description: | p1@NBR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NBR1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000341165, ENST00000389311, ENST00000389312, ENST00000537493, ENST00000542611, NM_005899, uc010whu.1, uc010whv.1, uc010whw.1_5end |
EntrezGene: | NBR1 |
HGNC: | 6746 |
UniProt: | Q14596F8W799B7Z4J4B7Z5R6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 5.11e-34 | 114 |
neural tube | 1.13e-09 | 56 |
neural rod | 1.13e-09 | 56 |
future spinal cord | 1.13e-09 | 56 |
neural keel | 1.13e-09 | 56 |
regional part of nervous system | 1.94e-08 | 53 |
regional part of brain | 1.94e-08 | 53 |
brain | 3.13e-08 | 68 |
future brain | 3.13e-08 | 68 |
regional part of forebrain | 6.81e-08 | 41 |
forebrain | 6.81e-08 | 41 |
anterior neural tube | 6.81e-08 | 41 |
future forebrain | 6.81e-08 | 41 |
structure with developmental contribution from neural crest | 3.14e-07 | 132 |
organ system subdivision | 8.56e-07 | 223 |