FFCP PHASE1:Hg19::chr4:77507174..77507199,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57619 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30422 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-93bp_to_ENST00000490690,uc011cby.1_5end | |||
|description=CAGE_peak_9_at_SHROOM3_5end | |||
|id=chr4:77507174..77507199,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002681;1.58e-10;12!CL:0002584;1.58e-10;12!CL:1000449;2.26e-08;15!CL:1000507;3.00e-08;10!CL:1000494;3.00e-08;10!CL:0002605;5.49e-08;3!CL:0000239;1.15e-07;3!CL:1000615;1.15e-07;3!CL:0002306;1.15e-07;3!CL:1000497;2.35e-07;17!CL:0002518;2.35e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0002681,2.29e-10,12;CL:0002584,2.29e-10,12;CL:1000449,3.03e-08,15;CL:1000507,4.26e-08,10;CL:1000494,4.26e-08,10;CL:0002605,5.41e-08,3;CL:0000239,1.73e-07,3;CL:1000615,1.73e-07,3;CL:0002306,1.73e-07,3;CL:1000497,3.03e-07,17;CL:0002518,3.03e-07,17 | |||
|ontology_enrichment_development_v019=UBERON:0004140;9.91e-07;1 | |||
|ontology_enrichment_disease=DOID:299!3.26e-08!25;DOID:305!4.72e-07!106 | |||
|ontology_enrichment_disease_v019=DOID:4929;1.46e-11;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4929,8.83e-12,2 | |||
|ontology_enrichment_uberon=UBERON:0002780!2.14e-13!41;UBERON:0001890!2.14e-13!41;UBERON:0006240!2.14e-13!41;UBERON:0003080!7.00e-13!42;UBERON:0000062!1.96e-12!511;UBERON:0001869!4.46e-12!32;UBERON:0001017!1.74e-11!82;UBERON:0000481!1.88e-11!347;UBERON:0000955!2.67e-11!69;UBERON:0006238!2.67e-11!69;UBERON:0002616!3.19e-11!59;UBERON:0001049!4.10e-11!57;UBERON:0005068!4.10e-11!57;UBERON:0006241!4.10e-11!57;UBERON:0007135!4.10e-11!57;UBERON:0005743!4.59e-11!86;UBERON:0001893!5.50e-11!34;UBERON:0000956!5.93e-11!25;UBERON:0000203!5.93e-11!25;UBERON:0002020!6.29e-11!34;UBERON:0003528!6.29e-11!34;UBERON:0000064!1.54e-10!219;UBERON:0002791!1.87e-10!33;UBERON:0000025!3.00e-10!194;UBERON:0003075!7.81e-10!86;UBERON:0007284!7.81e-10!86;UBERON:0007023!8.72e-10!115;UBERON:0000073!1.28e-09!94;UBERON:0001016!1.28e-09!94;UBERON:0002346!1.65e-09!90;UBERON:0003056!3.74e-09!61;UBERON:0000467!5.40e-09!625;UBERON:0000480!6.52e-09!626;UBERON:0000468!1.01e-08!659;UBERON:0002619!2.56e-08!22;UBERON:0001950!5.63e-08!20;UBERON:0000483!1.22e-07!309;UBERON:0000119!2.31e-07!312;UBERON:0000475!5.77e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0000353;9.21e-12;15!UBERON:0001225;1.58e-10;12!UBERON:0008987;1.58e-10;12!UBERON:0002108;7.26e-10;4!UBERON:0001851;2.26e-08;15!UBERON:0006555;2.26e-08;15!UBERON:0004819;2.26e-08;15!UBERON:0001285;2.26e-08;15!UBERON:0007684;2.26e-08;15!UBERON:0004211;3.00e-08;10!UBERON:0009773;3.00e-08;10!UBERON:0001231;3.00e-08;10!UBERON:0004810;3.00e-08;10!UBERON:0006853;1.15e-07;3!UBERON:0007685;1.15e-07;3!UBERON:0004134;1.15e-07;3!UBERON:0005409;1.93e-07;22!UBERON:0002294;5.05e-07;7!UBERON:0001173;5.05e-07;7!UBERON:0000160;6.70e-07;17!UBERON:0002423;7.07e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000353,1.30e-11,15;UBERON:0001225,2.29e-10,12;UBERON:0008987,2.29e-10,12;UBERON:0002108,5.44e-10,4;UBERON:0002294,3.90e-09,9;UBERON:0001173,3.90e-09,9;UBERON:0004912,3.90e-09,9;UBERON:0000058,4.03e-09,19;UBERON:0001851,3.03e-08,15;UBERON:0004211,3.03e-08,15;UBERON:0009773,3.03e-08,15;UBERON:0001231,3.03e-08,15;UBERON:0001285,3.03e-08,15;UBERON:0007684,3.03e-08,15;UBERON:0004208,3.03e-08,15;UBERON:0002394,3.89e-08,6;UBERON:0003928,3.89e-08,6;UBERON:0004810,4.26e-08,10;UBERON:0006555,1.03e-07,16;UBERON:0004819,1.03e-07,16;UBERON:0006853,1.73e-07,3;UBERON:0007685,1.73e-07,3;UBERON:0004134,1.73e-07,3;UBERON:0000160,5.92e-07,17;UBERON:0007499,6.34e-07,25;UBERON:0009497,6.85e-07,25;UBERON:0000015,6.85e-07,25;UBERON:0002423,6.85e-07,25;UBERON:0006235,6.85e-07,25;UBERON:0004161,6.85e-07,25 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,3.48900583986214,0.218441372130172,0,0,0,0,0,0,0,0,0,0,1.43117993565528,0.547497700291537,3.26410862946487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0.74000264525148,0,0,0,0,0,0,0,0,0,0.23486899728753,0,0,0,0,0,0,0,0,0,0.336672227908132,0,0,0,0,0,0,4.84352016359927,0.640672166455702,0,0,0,0.772921620136887,0.930584281657949,0.506328996723799,0.0974370051611986,0.757301322732344,0,0,0,0.403008392910561,0.169560592310488,0,0,0,0,0,0,0.10366105501537,0.504641701751257,0,0,0,1.38134921352481,0.464367928031979,0,0.236613600079688,0.168584690078102,0,0.220587945464788,0.217879444092406,0,0,0,0,0,1.40241773803446,0,2.94017422771084,0,0,0,0,1.47586126251736,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,1.04007436911366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0.511707249066704,0,0,0,0,0,0,0,1.0877350463246,0,0.0920809889358963,0,0,0,0,1.5403067420883,0.784349769176855,0,0.949964660035881,0,0,0.431831832204279,0,0,1.00337954770971,1.01950509218015,0,1.34324852833307,0,0,0,0,0,0.103041011647722,4.76161217055386,6.60075999364704,0,0,0,0,0,0,0,0,0,0.0852266274161009,1.95870478422822,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0,0.30982349809975,0,0,0,0.35667105148125,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.851692475380653,0,0,0,0,0,0,0,0,0,0,0.748562161632879,0,0,0,0,0.71623345421307,0,0.614321404198464,0.994147647766298,0.140669416410513,0,0,0,0.996239941255349,0.552567831062295,0,0,0,0,1.07842021376792,0,0,0,0,0,0,0.0927680981618513,5.98841394003583,0.520855522170466,0.0874599999961957,0,0,1.5255219017566,0,0,0,0,1.77148277162768,0,0,0.221158519862449,0,0.219385397153973,0,0,0,0,0,0.0897576444097721,0,0.957003479195758,0.732780747214898,0.533034776018635,0,0,0,0,0,0,0,0,0.210998064528027,0.489698424477443,0.141353071433941,0,0,1.32686346755009,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0.91821828489147,0,0.300646838828985,0.72581733978073,0,0,0.313932918407225,0,0.569219092059585,0,0.520679215005393,0,0,0,0.51595809741485,0.0967563312890851,0.219267951258557,0.164230914106418,0,0,0,0,0,0.253243183823515,0.195551382734803,0.561111741760736,1.28071796843612,1.19885765749278,0,0.687219576995494,0,0.288109595976299,0,0,0.543616824294456,0.732219924186332,0,0,0.600420288709789,0,0,0,0,0.837847203816763,0.458320848023367,0.717873024576814,0.599037001496973,0,0.446342914883745,2.35142153703542,0.360299883542404,0,0,0,0,0,0,1.59045937961861,0,0.482259445395058,0.275078873194468,0,0,0,0.242998226632099,0,0.0788057072991982,0.629455057619977,0.105600336519406,0,0.383830394638891,0,0.662091970365432,0,0,0,0,0,0,0,0,0.146552233678082,2.65013777824443,0.129282956361551,0,0,0,0.320362237703084,1.10043013569766,0.414239055347196,0,0,0,0.638341257770182,0,0,0,0,0,0,0.732157589411779,0.1251909307065,0,0.221858103073705,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59238355479446,0,0,0,0,0.57785949122191,0,0,0,0,0,0,0,0,0,0,0,0,0.690860683462397,0,0.138258436151731,0,0,0,0.327609848846413,0,0.422624246717254,0,0,0,0,0,0,0,0,0,0,0.436838552768056,0,0,0,0,0,0,0,0,0,0.321146125482298,0,0,0.205116364240755,2.01657356977374,0.414943514785307,0.645902582527404,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0.163771917510097,1.6264169483875,0.202612753855184,0,0.206686796501184,0.253663240775627,0.546974809018219,0,0,0.175871244359621,0.255524855279191,1.07140367175657,0,0.606965604236632,0.91064876540519,0,0.230467975111559,0,0.203909198930495,0,0,0,0.235479278551542,0,0.560544326627578,0.913158720509496,0,0,0.142953088353313,0,0,0.521574816907738,0,0,0,0,0,0,0,0,0.9164274741762,0,0,0.894843454382338,0.196300467230486,1.82876887473404,0,0,2.3196288626764,0,0.233939463462106,2.78531085225916,0,0.22589216407792,0,0.150962843566674,2.00652811080656,1.5299169235277,0,0,0.707029641304878,0,0,0,0,0.187967835959707,0.0644578879735772,0,0,0,0.401206833445841,0,0,0,0,0.407948941145488,0,0,0,0,0,0.756998549010474,0,0.126698501011437,0.203977659483963,0,0.18378979906969,0.250707539292375,0,0,0,0.103432995861895,0.213233981900981,0,0,0,2.35476911419288,0.0636471582781649,0,0,0,0,0.143444410785353,0,0.0814032686109745,0,0,3.50318288215689,0,0,0,0,0.201273793591026,0 | |||
|short_description=p9@SHROOM3 | |||
}} |
Revision as of 01:44, 22 January 2014
Short description: | p9@SHROOM3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_SHROOM3_5end |
Coexpression cluster: | NA |
Association with transcript: | -93bp_to_ENST00000490690, uc011cby.1_5end |
EntrezGene: | SHROOM3 |
HGNC: | 30422 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cortical cell | 2.29e-10 | 12 |
renal cortical epithelial cell | 2.29e-10 | 12 |
epithelial cell of nephron | 3.03e-08 | 15 |
kidney tubule cell | 4.26e-08 | 10 |
nephron tubule epithelial cell | 4.26e-08 | 10 |
astrocyte of the cerebral cortex | 5.41e-08 | 3 |
brush border epithelial cell | 1.73e-07 | 3 |
kidney cortex tubule cell | 1.73e-07 | 3 |
epithelial cell of proximal tubule | 1.73e-07 | 3 |
kidney cell | 3.03e-07 | 17 |
kidney epithelial cell | 3.03e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
parenchyma | 1.30e-11 | 15 |
cortex of kidney | 2.29e-10 | 12 |
renal parenchyma | 2.29e-10 | 12 |
small intestine | 5.44e-10 | 4 |
biliary system | 3.90e-09 | 9 |
biliary tree | 3.90e-09 | 9 |
biliary bud | 3.90e-09 | 9 |
duct | 4.03e-09 | 19 |
cortex | 3.03e-08 | 15 |
nephron epithelium | 3.03e-08 | 15 |
renal tubule | 3.03e-08 | 15 |
nephron tubule | 3.03e-08 | 15 |
nephron | 3.03e-08 | 15 |
uriniferous tubule | 3.03e-08 | 15 |
nephrogenic mesenchyme | 3.03e-08 | 15 |
bile duct | 3.89e-08 | 6 |
digestive system duct | 3.89e-08 | 6 |
nephron tubule epithelium | 4.26e-08 | 10 |
excretory tube | 1.03e-07 | 16 |
kidney epithelium | 1.03e-07 | 16 |
renal cortex tubule | 1.73e-07 | 3 |
region of nephron tubule | 1.73e-07 | 3 |
proximal tubule | 1.73e-07 | 3 |
intestine | 5.92e-07 | 17 |
epithelial sac | 6.34e-07 | 25 |
epithelium of foregut-midgut junction | 6.85e-07 | 25 |
anatomical boundary | 6.85e-07 | 25 |
hepatobiliary system | 6.85e-07 | 25 |
foregut-midgut junction | 6.85e-07 | 25 |
septum transversum | 6.85e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
tubular adenocarcinoma | 8.83e-12 | 2 |