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{{UBERON
{{UBERON
|id=UBERON:0010707
|alt_id=
|name=appendage girdle complex
|namespace=
|def="An organism subdivision that includes both an appendage and its accociated girdle region. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc)." [UBERON:cjm, UBERONREF:0000003]
|xref=FMA:7182;;VSAO:0000214
|is_a=UBERON:0000475
|synonym="appendage complex" EXACT [UBERON:cjm];;"appendage-girdle complex" EXACT [UBERON:cjm];;"girdle plus limb or fin" EXACT [UBERON:cjm];;"limb" RELATED INCONSISTENT [FMA:7182]
|comment=It is still called a complex when one of the two parts is missing (?) There are fossil fishes with only an outgrowth (no record of a girdle), including thelodonts (which have a suprabranchial fin) as well as some anaspids which have a distinctive 'paired fin' (with differing published assertions on whether it's homologous to a pec fin or pelvic fin or both or neither).  There are many fishes and other vertebrates with only a girdle and no outgrowth.[VSAO] AO notes: note that the FMA uses the term 'limb' to refer to the entire appendage complex (free limb plus girdle region)
|comment=It is still called a complex when one of the two parts is missing (?) There are fossil fishes with only an outgrowth (no record of a girdle), including thelodonts (which have a suprabranchial fin) as well as some anaspids which have a distinctive 'paired fin' (with differing published assertions on whether it's homologous to a pec fin or pelvic fin or both or neither).  There are many fishes and other vertebrates with only a girdle and no outgrowth.[VSAO] AO notes: note that the FMA uses the term 'limb' to refer to the entire appendage complex (free limb plus girdle region)
|alt_id=
|disjoint_from=
|union_of=
|created_by=haendel
|created_by=haendel
|obo_creation_date=2012-04-23T10:46:51Z
|def="An organism subdivision that includes both an appendage and its accociated girdle region. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc)." [UBERON:cjm, UBERONREF:0000003]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0010707
|is_a=UBERON:0000475 ;;UBERON:0015212
|is_obsolete=
|located_in=
|located_in=
|name=appendage girdle complex
|namespace=
|obo_creation_date=2012-04-23T10:46:51Z
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="appendage complex" EXACT [UBERON:cjm];;"appendage-girdle complex" EXACT [UBERON:cjm];;"girdle plus limb or fin" EXACT [UBERON:cjm];;"limb" RELATED INCONSISTENT [FMA:7182]
|union_of=
|xref=FMA:7182;;VSAO:0000214
}}
}}

Revision as of 11:50, 12 September 2014

Name:appendage girdle complex
Definition:"An organism subdivision that includes both an appendage and its accociated girdle region. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc)." [UBERON:cjm, UBERONREF:0000003]
Xrefs:
links:

FMA:7182

VSAO:0000214
Synonyms: "appendage complex" EXACT [UBERON:cjm]
"appendage-girdle complex" EXACT [UBERON:cjm]
"girdle plus limb or fin" EXACT [UBERON:cjm]
"limb" RELATED INCONSISTENT [FMA:7182]
Comments:It is still called a complex when one of the two parts is missing (?) There are fossil fishes with only an outgrowth (no record of a girdle), including thelodonts (which have a suprabranchial fin) as well as some anaspids which have a distinctive 'paired fin' (with differing published assertions on whether it's homologous to a pec fin or pelvic fin or both or neither). There are many fishes and other vertebrates with only a girdle and no outgrowth.[VSAO] AO notes: note that the FMA uses the term 'limb' to refer to the entire appendage complex (free limb plus girdle region)
Created by:haendel
Creation date:2012-04-23T10:46:51Z

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000475(organism subdivision),UBERON:0015212(lateral structure)



Children

is a:UBERON:0010708 (pectoral complex),UBERON:0010709 (pelvic complex)
part of:UBERON:0004708 (paired limb/fin),UBERON:0010740 (bone of appendage girdle complex)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010707 (appendage girdle complex), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_8602e6180f3d65eb816ec8d96aececbbp@chr22:25535147..25535150, +
5.42e-195FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_8602e6180f3d65eb816ec8d96aececbbp@chr7:128483294..128483304, +
5.42e-195FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_8602e6180f3d65eb816ec8d96aececbbp@chr10:97176812..97176813, +
5.42e-195FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_8602e6180f3d65eb816ec8d96aececbbp@chr2:179396370..179396375, -
5.42e-195FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_8602e6180f3d65eb816ec8d96aececbbp@chr10:97176812..97176813, +
5.42e-195FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_8602e6180f3d65eb816ec8d96aececbbp@chr2:76859417..76859418, +
5.42e-195FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_8602e6180f3d65eb816ec8d96aececbbp@chr11:3691037..3691040, +
5.42e-195FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_8602e6180f3d65eb816ec8d96aececbbp@chr4:85166508..85166512, +
5.42e-195FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_8602e6180f3d65eb816ec8d96aececbbp@chr11:3691037..3691040, +
5.42e-195FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_8602e6180f3d65eb816ec8d96aececbbp@chr4:186423235..186423240, -
5.42e-195FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_8602e6180f3d65eb816ec8d96aececbbp@chr22:25535147..25535150, +
5.42e-195FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_8602e6180f3d65eb816ec8d96aececbbp@chr10:79759687..79759690, +
5.42e-195FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_8602e6180f3d65eb816ec8d96aececbbp@chr2:179396370..179396375, -
5.42e-195FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_8602e6180f3d65eb816ec8d96aececbbp@chr2:76859417..76859418, +
5.42e-195FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_8602e6180f3d65eb816ec8d96aececbbp@chr10:79759687..79759690, +
5.42e-195FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_8602e6180f3d65eb816ec8d96aececbbp@chr4:186423235..186423240, -
5.42e-195FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_8602e6180f3d65eb816ec8d96aececbbp@chr4:85166508..85166512, +
5.42e-195FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_8602e6180f3d65eb816ec8d96aececbbp@chr7:128483294..128483304, +
9.37e-99FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_13b8b112ab09d662f4d2e7efc9d82d01p54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_13b8b112ab09d662f4d2e7efc9d82d01p@chr5:137206180..137206187, +
9.37e-99FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_13b8b112ab09d662f4d2e7efc9d82d01p104@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_13b8b112ab09d662f4d2e7efc9d82d01p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_13b8b112ab09d662f4d2e7efc9d82d01p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_13b8b112ab09d662f4d2e7efc9d82d01p7@FLJ36848
9.37e-99FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_13b8b112ab09d662f4d2e7efc9d82d01p@chr5:117747577..117747580, +
9.37e-99FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_13b8b112ab09d662f4d2e7efc9d82d01p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_13b8b112ab09d662f4d2e7efc9d82d01p108@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_13b8b112ab09d662f4d2e7efc9d82d01p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_13b8b112ab09d662f4d2e7efc9d82d01p77@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_13b8b112ab09d662f4d2e7efc9d82d01p93@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_13b8b112ab09d662f4d2e7efc9d82d01p46@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_13b8b112ab09d662f4d2e7efc9d82d01p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_13b8b112ab09d662f4d2e7efc9d82d01p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_13b8b112ab09d662f4d2e7efc9d82d01p@chr5:137206180..137206187, +
9.37e-99FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_13b8b112ab09d662f4d2e7efc9d82d01p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_13b8b112ab09d662f4d2e7efc9d82d01p54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_13b8b112ab09d662f4d2e7efc9d82d01p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_13b8b112ab09d662f4d2e7efc9d82d01p104@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_13b8b112ab09d662f4d2e7efc9d82d01p7@FLJ36848
9.37e-99FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_13b8b112ab09d662f4d2e7efc9d82d01p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_13b8b112ab09d662f4d2e7efc9d82d01p108@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_13b8b112ab09d662f4d2e7efc9d82d01p93@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_13b8b112ab09d662f4d2e7efc9d82d01p@chr5:117747577..117747580, +
9.37e-99FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_13b8b112ab09d662f4d2e7efc9d82d01p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_13b8b112ab09d662f4d2e7efc9d82d01p77@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_13b8b112ab09d662f4d2e7efc9d82d01p46@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_13b8b112ab09d662f4d2e7efc9d82d01p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_13b8b112ab09d662f4d2e7efc9d82d01p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_13b8b112ab09d662f4d2e7efc9d82d01p@chr2:152525581..152525588, -
2.55e-98FFCP PHASE1:Hg19::chr10:97037060..97037066,-#_48dad317ebcdb7464f57400779a939f1p@chr10:97037060..97037066, -
2.55e-98FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_48dad317ebcdb7464f57400779a939f1p@chr2:179656442..179656451, -
2.55e-98FFCP PHASE2:Hg19::chr2:168102459..168102468,+#_48dad317ebcdb7464f57400779a939f1p73@XIRP2
2.55e-98FFCP PHASE1:Hg19::chr3:69168368..69168389,-#_48dad317ebcdb7464f57400779a939f1p@chr3:69168368..69168389, -
2.55e-98FFCP PHASE2:Hg19::chr2:152566311..152566321,-#_48dad317ebcdb7464f57400779a939f1p@chr2:152566311..152566321, -
2.55e-98FFCP PHASE2:Hg19::chr5:95180155..95180172,+#_48dad317ebcdb7464f57400779a939f1p@chr5:95180155..95180172, +
2.55e-98FFCP PHASE1:Hg19::chr10:29918007..29918031,-#_48dad317ebcdb7464f57400779a939f1p@chr10:29918007..29918031, -
2.55e-98FFCP PHASE1:Hg19::chr3:35732964..35732965,+#_48dad317ebcdb7464f57400779a939f1p@chr3:35732964..35732965, +
2.55e-98FFCP PHASE2:Hg19::chr22:26299595..26299605,+#_48dad317ebcdb7464f57400779a939f1p@chr22:26299595..26299605, +
2.55e-98FFCP PHASE1:Hg19::chr2:29398214..29398229,+#_48dad317ebcdb7464f57400779a939f1p27@CLIP4
2.55e-98FFCP PHASE1:Hg19::chr12:69653866..69653876,+#_48dad317ebcdb7464f57400779a939f1p@chr12:69653866..69653876, +
2.55e-98FFCP PHASE1:Hg19::chr18:8608021..8608050,+#_48dad317ebcdb7464f57400779a939f1p@chr18:8608021..8608050, +
2.55e-98FFCP PHASE1:Hg19::chr6:125535391..125535409,+#_48dad317ebcdb7464f57400779a939f1p@chr6:125535391..125535409, +
2.55e-98FFCP PHASE2:Hg19::chr2:152590465..152590472,-#_48dad317ebcdb7464f57400779a939f1p@chr2:152590465..152590472, -
2.55e-98FFCP PHASE2:Hg19::chr18:8608021..8608050,+#_48dad317ebcdb7464f57400779a939f1p@chr18:8608021..8608050, +
2.55e-98FFCP PHASE1:Hg19::chr3:46924232..46924241,+#_48dad317ebcdb7464f57400779a939f1p@chr3:46924232..46924241, +
2.55e-98FFCP PHASE2:Hg19::chr21:47769234..47769239,+#_48dad317ebcdb7464f57400779a939f1p@chr21:47769234..47769239, +
2.55e-98FFCP PHASE1:Hg19::chr2:152566311..152566321,-#_48dad317ebcdb7464f57400779a939f1p@chr2:152566311..152566321, -
2.55e-98FFCP PHASE1:Hg19::chr12:122884464..122884467,-#_48dad317ebcdb7464f57400779a939f1p38@CLIP1
2.55e-98FFCP PHASE2:Hg19::chr2:179656442..179656451,-#_48dad317ebcdb7464f57400779a939f1p@chr2:179656442..179656451, -
2.55e-98FFCP PHASE1:Hg19::chr2:168102459..168102468,+#_48dad317ebcdb7464f57400779a939f1p73@XIRP2
2.55e-98FFCP PHASE1:Hg19::chr22:26299595..26299605,+#_48dad317ebcdb7464f57400779a939f1p@chr22:26299595..26299605, +
2.55e-98FFCP PHASE2:Hg19::chr12:69653866..69653876,+#_48dad317ebcdb7464f57400779a939f1p@chr12:69653866..69653876, +
2.55e-98FFCP PHASE2:Hg19::chr3:35732964..35732965,+#_48dad317ebcdb7464f57400779a939f1p@chr3:35732964..35732965, +
2.55e-98FFCP PHASE1:Hg19::chr5:95180155..95180172,+#_48dad317ebcdb7464f57400779a939f1p@chr5:95180155..95180172, +
2.55e-98FFCP PHASE2:Hg19::chr3:69168368..69168389,-#_48dad317ebcdb7464f57400779a939f1p@chr3:69168368..69168389, -

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