UBERON:0000478: Difference between revisions
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|located_in= | |located_in= | ||
|name=extraembryonic structure | |name=extraembryonic structure | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0016887 | |part_of=UBERON:0016887 | ||
Latest revision as of 17:09, 12 September 2014
| Name: | extraembryonic structure | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo." [CARO:MAH] | ||
| Xrefs: |
| ||
| Synonyms: |
"extra-embryonic structure" EXACT [] "extraembryonic component" RELATED [] "extraembryonic tissue" RELATED [] | ||
| Comments: | see also conceptus extraembryonic component in EHDAA2 | ||
| Alt_id: | UBERON:CARO_0000042-FBbt_00005835-FMA_85537-MIAA_0000061-ZFA_0000020 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000061(anatomical structure) |
|---|---|
| disjoint_from: | UBERON:0002050(embryonic structure) |
| part_of: | UBERON:0016887(entire extraembryonic component) |
Children
| is a: | UBERON:0000920 (egg chorion),UBERON:0001987 (placenta),UBERON:0002331 (umbilical cord),UBERON:0005292 (extraembryonic tissue),UBERON:0005631 (extraembryonic membrane),UBERON:0005971 (amniotic fold),UBERON:0007806 (connecting stalk) |
|---|---|
| part of: | FF:0000218 (chicken embryo extraembryonic tissue day7 HH32),FF:0000219 (chicken embryo extraembryonic tissue day15 HH41),CL:0000349 (extraembryonic cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10021-101D3 (placenta, adult, pool1)
- 10057-101H3 (umbilical cord, fetal, donor1)
- 10091-102C1
- 10230-103I5 (chicken embryo, extraembryonic tissue, day07 (HH32))
- 10231-103I6 (chicken embryo, extraembryonic tissue, day15 (HH41))
- 10449-106F8 (cord blood derived cell line:COBL-a untreated)
- 10452-106G2 (cord blood derived cell line:COBL-a 24h infection(-C))
- 10453-106G3 (cord blood derived cell line:COBL-a 24h infection)
- 11214-116A8 (Mesenchymal stem cells - umbilical, donor0)
- 11278-116H9 (Placental Epithelial Cells, donor1)
... further results Mouse (Mus musculus)
- 10021-101D3 (placenta, adult, pool1)
- 10057-101H3 (umbilical cord, fetal, donor1)
- 10091-102C1
- 10230-103I5 (chicken embryo, extraembryonic tissue, day07 (HH32))
- 10231-103I6 (chicken embryo, extraembryonic tissue, day15 (HH41))
- 10449-106F8 (cord blood derived cell line:COBL-a untreated)
- 10452-106G2 (cord blood derived cell line:COBL-a 24h infection(-C))
- 10453-106G3 (cord blood derived cell line:COBL-a 24h infection)
- 11214-116A8 (Mesenchymal stem cells - umbilical, donor0)
- 11278-116H9 (Placental Epithelial Cells, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000478 (extraembryonic structure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.4e-90 | FFCP PHASE1:Hg19::chr3:55384975..55384986,-#_4c4a71465ec68016fe7a84c055fff15f | p1@ENST00000469806 |
| 4.4e-90 | FFCP PHASE2:Hg19::chr3:55384975..55384986,-#_4c4a71465ec68016fe7a84c055fff15f | p1@ENST00000469806 |
| 1.78e-89 | FFCP PHASE2:Hg19::chr20:61287795..61287809,+#_54aa8bf4ff2c928af23fca873bdb2622 | p4@SLCO4A1 |
| 1.78e-89 | FFCP PHASE1:Hg19::chr20:61287795..61287809,+#_54aa8bf4ff2c928af23fca873bdb2622 | p4@SLCO4A1 |
| 1.58e-86 | FFCP PHASE2:Mm9::chrX:136335520..136335531,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p4@Cldn2 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr6:48879890..48879896,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p1@1600015I10Rik |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:27339701..27339760,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr13:27339701..27339760, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr7:17788842..17788851,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p2@Psg29 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr6:97907033..97907043,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr6:97907033..97907043, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:55223511..55223524,-#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr11:55223511..55223524, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:61265572..61265576,-#_91d2790787b49f99f30f6e59cf5f4cc1 | p2@Ctsr |
| 1.58e-86 | FFCP PHASE1:Mm9::chr14:26461997..26462039,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr14:26461997..26462039, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr7:17749305..17749310,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr7:17749305..17749310, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:61040767..61040776,-#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr13:61040767..61040776, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr7:17749305..17749310,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr7:17749305..17749310, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:61265572..61265576,-#_91d2790787b49f99f30f6e59cf5f4cc1 | p2@Ctsr |
| 1.58e-86 | FFCP PHASE2:Mm9::chr1:63260883..63260896,-#_91d2790787b49f99f30f6e59cf5f4cc1 | p3@Gpr1 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:57927144..57927163,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p19@Stra6 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr7:17798686..17798694,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr7:17798686..17798694, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:27341334..27341356,-#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr13:27341334..27341356, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr5:125523411..125523420,-#_91d2790787b49f99f30f6e59cf5f4cc1 | p24@Ncor2 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr6:145765021..145765041,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr6:145765021..145765041, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chrX:136335482..136335502,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p3@Cldn2 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr5:114862554..114862564,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr5:114862554..114862564, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr7:17788797..17788806,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p4@Psg29 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr1:71787899..71787904,-#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr1:71787899..71787904, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:61040767..61040776,-#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr13:61040767..61040776, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:27337674..27337690,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr13:27337674..27337690, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr7:17788797..17788806,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p4@Psg29 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:27335609..27335622,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr13:27335609..27335622, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr1:193090931..193090940,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr1:193090931..193090940, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:55223511..55223524,-#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr11:55223511..55223524, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:27341334..27341356,-#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr13:27341334..27341356, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr14:26461997..26462039,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr14:26461997..26462039, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr7:17798686..17798694,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr7:17798686..17798694, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:27337674..27337690,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr13:27337674..27337690, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:27288509..27288515,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p1@Prl3c1 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:61041994..61042014,-#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr13:61041994..61042014, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr6:97907033..97907043,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr6:97907033..97907043, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chrX:136335482..136335502,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p3@Cldn2 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:111108246..111108253,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr9:111108246..111108253, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chrX:136335507..136335518,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p5@Cldn2 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr5:115211954..115211984,-#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr5:115211954..115211984, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:27339701..27339760,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr13:27339701..27339760, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr15:78342035..78342046,-#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr15:78342035..78342046, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:57927144..57927163,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p19@Stra6 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr14:102036767..102036774,-#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr14:102036767..102036774, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr15:78342035..78342046,-#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr15:78342035..78342046, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:27335609..27335622,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr13:27335609..27335622, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chrX:141915185..141915200,-#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chrX:141915185..141915200, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:33048652..33048685,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr13:33048652..33048685, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chrX:136335507..136335518,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p5@Cldn2 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:61041994..61042014,-#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr13:61041994..61042014, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chrX:136335520..136335531,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p4@Cldn2 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:61105387..61105403,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr13:61105387..61105403, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr7:17788842..17788851,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p2@Psg29 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr1:71787899..71787904,-#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr1:71787899..71787904, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:114862554..114862564,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr5:114862554..114862564, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr14:102036767..102036774,-#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr14:102036767..102036774, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr1:63260883..63260896,-#_91d2790787b49f99f30f6e59cf5f4cc1 | p3@Gpr1 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr6:48879890..48879896,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p1@1600015I10Rik |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:33048652..33048685,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr13:33048652..33048685, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:125523411..125523420,-#_91d2790787b49f99f30f6e59cf5f4cc1 | p24@Ncor2 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:27288509..27288515,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p1@Prl3c1 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:61105387..61105403,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr13:61105387..61105403, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr6:145765021..145765041,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr6:145765021..145765041, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:115211954..115211984,-#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr5:115211954..115211984, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr1:193090931..193090940,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr1:193090931..193090940, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chrX:141915185..141915200,-#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chrX:141915185..141915200, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:111108246..111108253,+#_91d2790787b49f99f30f6e59cf5f4cc1 | p@chr9:111108246..111108253, + |
| 1.2e-83 | FFCP PHASE2:Hg19::chr11:8857295..8857310,-#_a15e390c39e4e85e831ebe6b833a987c | p21@ST5 |
| 1.2e-83 | FFCP PHASE1:Hg19::chr11:8857295..8857310,-#_a15e390c39e4e85e831ebe6b833a987c | p21@ST5 |
| 1.39e-83 | FFCP PHASE2:Hg19::chr11:8857248..8857269,-#_899107337649f545d6fbc396f58e2d31 | p16@ST5 |
| 1.39e-83 | FFCP PHASE1:Hg19::chr11:8857248..8857269,-#_899107337649f545d6fbc396f58e2d31 | p16@ST5 |
| 2.0e-83 | FFCP PHASE2:Hg19::chr2:237682990..237683009,+#_ecd1c18dc236de508afe50526e6815dd | p@chr2:237682990..237683009, + |
| 2.0e-83 | FFCP PHASE1:Hg19::chr2:237682990..237683009,+#_ecd1c18dc236de508afe50526e6815dd | p@chr2:237682990..237683009, + |
| 4.85e-82 | FFCP PHASE2:Hg19::chr2:237683156..237683171,+#_b37d61f1e96b1e761fb2e653ff6cdfa7 | p@chr2:237683156..237683171, + |
| 4.85e-82 | FFCP PHASE1:Hg19::chr2:237683156..237683171,+#_b37d61f1e96b1e761fb2e653ff6cdfa7 | p@chr2:237683156..237683171, + |
| 1.89e-81 | FFCP PHASE2:Hg19::chr19:36592982..36592993,+#_1297bbfe4c8188a5c11c92814ffa49ce | p@chr19:36592982..36592993, + |
| 1.89e-81 | FFCP PHASE1:Hg19::chr19:36592982..36592993,+#_1297bbfe4c8188a5c11c92814ffa49ce | p@chr19:36592982..36592993, + |
| 3.49e-78 | FFCP PHASE2:Hg19::chr11:8857215..8857232,-#_37d7b37317238aa0d967ac82a3328a49 | p17@ST5 |
| 3.49e-78 | FFCP PHASE1:Hg19::chr11:8857215..8857232,-#_37d7b37317238aa0d967ac82a3328a49 | p17@ST5 |
| 2.4e-75 | FFCP PHASE1:Hg19::chr15:68344995..68345013,+#_ca492a39293c2c12b48f894455545947 | p@chr15:68344995..68345013, + |
| 2.4e-75 | FFCP PHASE2:Hg19::chr15:68344995..68345013,+#_ca492a39293c2c12b48f894455545947 | p@chr15:68344995..68345013, + |
| 1.93e-73 | FFCP PHASE2:Hg19::chr2:25862154..25862172,-#_503967efe8d22cfc03a5bba2d5cac469 | p14@DTNB |
| 1.93e-73 | FFCP PHASE1:Hg19::chr2:25862154..25862172,-#_503967efe8d22cfc03a5bba2d5cac469 | p14@DTNB |
| 2.39e-73 | FFCP PHASE2:Hg19::chr2:237683212..237683239,+#_69643ec5c1d3458e412957d09d79a902 | p@chr2:237683212..237683239, + |
| 2.39e-73 | FFCP PHASE1:Hg19::chr2:237683212..237683239,+#_69643ec5c1d3458e412957d09d79a902 | p@chr2:237683212..237683239, + |
| 3.28e-70 | FFCP PHASE2:Hg19::chr2:237682954..237682971,+#_29658aa5351d45309c5057f2064489ac | p@chr2:237682954..237682971, + |
| 3.28e-70 | FFCP PHASE1:Hg19::chr2:237682954..237682971,+#_29658aa5351d45309c5057f2064489ac | p@chr2:237682954..237682971, + |
| 3.51e-70 | FFCP PHASE1:Hg19::chr13:43636294..43636306,+#_91e50d06609c409917b63c82c4fa7023 | p@chr13:43636294..43636306, + |
| 3.51e-70 | FFCP PHASE2:Hg19::chr13:43636294..43636306,+#_91e50d06609c409917b63c82c4fa7023 | p@chr13:43636294..43636306, + |
| 8.51e-69 | FFCP PHASE2:Hg19::chr19:36592925..36592948,+#_7836d5e142e6ebc087991264ab4a2358 | p@chr19:36592925..36592948, + |
| 8.51e-69 | FFCP PHASE1:Hg19::chr19:36592925..36592948,+#_7836d5e142e6ebc087991264ab4a2358 | p@chr19:36592925..36592948, + |
| 3.88e-66 | FFCP PHASE1:Hg19::chr18:6286777..6286797,+#_378a3574081031f94d1002294d2c9622 | p@chr18:6286777..6286797, + |
| 3.88e-66 | FFCP PHASE2:Hg19::chr18:6286777..6286797,+#_378a3574081031f94d1002294d2c9622 | p@chr18:6286777..6286797, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chrX:103450706..103450715,-#_be6a0714e61b8f18390fbff5e6973618 | p1@Fnd3c2 |
| 1.33e-65 | FFCP PHASE1:Mm9::chrX:103450706..103450715,-#_be6a0714e61b8f18390fbff5e6973618 | p1@Fnd3c2 |
| 1.33e-65 | FFCP PHASE1:Mm9::chr7:17735559..17735585,+#_be6a0714e61b8f18390fbff5e6973618 | p1@Ceacam3 |
| 1.33e-65 | FFCP PHASE2:Mm9::chrX:53802692..53802721,-#_be6a0714e61b8f18390fbff5e6973618 | p1@Gm648 |
