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{{UBERON
{{UBERON
|id=UBERON:0007524
|alt_id=EHDAA2:0003146
|name=dense mesenchyme tissue
|namespace=
|def="Mesenchyme with little extracellular matrix." [AEO:JB]
|xref=AEO:0000146;;EHDAA2:0003146
|is_a=UBERON:0003104
|synonym=
|comment=
|comment=
|alt_id=EHDAA2:0003146
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Mesenchyme with little extracellular matrix." [AEO:JB]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0007524
|is_a=UBERON:0003104
|is_obsolete=
|located_in=
|located_in=
|name=dense mesenchyme tissue
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=AEO:0000146;;EHDAA2:0003146
}}
}}

Latest revision as of 18:02, 12 September 2014

Name:dense mesenchyme tissue
Namespace:FANTOM
Definition:"Mesenchyme with little extracellular matrix." [AEO:JB]
Xrefs:
links:

AEO:0000146

EHDAA2:0003146
Alt_id: EHDAA2:0003146

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0003104(mesenchyme)



Children

is a:UBERON:0003077 (paraxial mesoderm),UBERON:0003081 (lateral plate mesoderm),UBERON:0005728 (extraembryonic mesoderm),UBERON:0005856 (developing mesenchymal condensation),UBERON:0009494 (pharyngeal arch mesenchymal region),UBERON:0010046 (entire pharyngeal arch associated mesenchyme),UBERON:0010349 (otic capsule pre-cartilage condensation)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007524 (dense mesenchyme tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data