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{{UBERON
{{UBERON
|id=UBERON:0007806
|alt_id=
|name=connecting stalk
|namespace=
|def="A bridge of mesoderm connecting the caudal end of the young embryo with the trophoblastic tissues; the precursor of the umbilical cord." [Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/]
|xref=BTO:0004705;;ncithesaurus:Connecting_Stalk
|is_a=UBERON:0000478;;UBERON:0004120
|synonym=
|comment=todo - this is currently defined as a bridge of mesoderm, but in EHDAA2 is extraembryonic structure split into mesoderm and blood vessels
|comment=todo - this is currently defined as a bridge of mesoderm, but in EHDAA2 is extraembryonic structure split into mesoderm and blood vessels
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A bridge of mesoderm connecting the caudal end of the young embryo with the trophoblastic tissues; the precursor of the umbilical cord." [Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0005728
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0007806
|is_a=UBERON:0000478 ;;UBERON:0004120
|is_obsolete=
|located_in=
|located_in=
|name=connecting stalk
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=BTO:0004705;;ncithesaurus:Connecting_Stalk
}}
}}

Latest revision as of 18:03, 12 September 2014

Name:connecting stalk
Namespace:FANTOM
Definition:"A bridge of mesoderm connecting the caudal end of the young embryo with the trophoblastic tissues; the precursor of the umbilical cord." [Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/]
Xrefs:
links:

BTO:0004705

ncithesaurus:Connecting_Stalk
Comments:todo - this is currently defined as a bridge of mesoderm, but in EHDAA2 is extraembryonic structure split into mesoderm and blood vessels

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000478(extraembryonic structure),UBERON:0004120(mesoderm-derived structure)
develops_from:UBERON:0005728(extraembryonic mesoderm)



Children

develops from:UBERON:0002331 (umbilical cord)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007806 (connecting stalk), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.79e-79FFCP PHASE2:Hg19::chr7:135931480..135931486,+#_14bb33615039afdf9052037a7d91f708p@chr7:135931480..135931486, +
5.79e-79FFCP PHASE1:Hg19::chr7:135931480..135931486,+#_14bb33615039afdf9052037a7d91f708p@chr7:135931480..135931486, +
5.79e-79FFCP PHASE1:Hg19::chr10:120921270..120921282,-#_14bb33615039afdf9052037a7d91f708p@chr10:120921270..120921282, -
5.79e-79FFCP PHASE2:Hg19::chr10:120921270..120921282,-#_14bb33615039afdf9052037a7d91f708p@chr10:120921270..120921282, -
2.16e-63FFCP PHASE1:Hg19::chr1:205744117..205744127,-#_f6db00c50a1cf20f61c2f87d1ff10a42p8@RAB7L1
2.16e-63FFCP PHASE2:Hg19::chr1:205744117..205744127,-#_f6db00c50a1cf20f61c2f87d1ff10a42p8@RAB7L1
1.1e-59FFCP PHASE1:Hg19::chr3:119281371..119281382,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:119281371..119281382, -
1.1e-59FFCP PHASE1:Hg19::chr10:61574767..61574776,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:61574767..61574776, -
1.1e-59FFCP PHASE2:Hg19::chr4:167748986..167748989,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167748986..167748989, -
1.1e-59FFCP PHASE1:Hg19::chr19:40074306..40074328,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:40074306..40074328, +
1.1e-59FFCP PHASE2:Hg19::chr9:75002215..75002221,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:75002215..75002221, -
1.1e-59FFCP PHASE2:Hg19::chr20:22771662..22771675,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr20:22771662..22771675, +
1.1e-59FFCP PHASE2:Hg19::chr19:31524425..31524444,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:31524425..31524444, -
1.1e-59FFCP PHASE2:Hg19::chr20:39574012..39574015,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr20:39574012..39574015, +
1.1e-59FFCP PHASE1:Hg19::chr6:42362820..42362827,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:42362820..42362827, -
1.1e-59FFCP PHASE1:Hg19::chr4:167932279..167932291,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167932279..167932291, -
1.1e-59FFCP PHASE2:Hg19::chr8:12548586..12548602,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr8:12548586..12548602, -
1.1e-59FFCP PHASE2:Hg19::chr2:148279057..148279078,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:148279057..148279078, +
1.1e-59FFCP PHASE2:Hg19::chr1:172807491..172807499,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr1:172807491..172807499, -
1.1e-59FFCP PHASE2:Hg19::chr14:76957754..76957760,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr14:76957754..76957760, +
1.1e-59FFCP PHASE1:Hg19::chr2:228216610..228216617,+#_1ac1f7fee605574c13bf5a8740d5fd0fp18@MFF
1.1e-59FFCP PHASE1:Hg19::chr22:37484379..37484392,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr22:37484379..37484392, +
1.1e-59FFCP PHASE2:Hg19::chr9:74981579..74981583,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:74981579..74981583, -
1.1e-59FFCP PHASE2:Hg19::chr1:207627342..207627349,+#_1ac1f7fee605574c13bf5a8740d5fd0fp3@CR2
1.1e-59FFCP PHASE1:Hg19::chr7:102945487..102945492,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:102945487..102945492, +
1.1e-59FFCP PHASE1:Hg19::chr3:75655787..75655802,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:75655787..75655802, -
1.1e-59FFCP PHASE2:Hg19::chr19:10987850..10987854,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:10987850..10987854, +
1.1e-59FFCP PHASE1:Hg19::chr14:76957754..76957760,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr14:76957754..76957760, +
1.1e-59FFCP PHASE1:Hg19::chr10:120921294..120921306,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:120921294..120921306, -
1.1e-59FFCP PHASE1:Hg19::chr21:18180062..18180079,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr21:18180062..18180079, -
1.1e-59FFCP PHASE1:Hg19::chr12:24889813..24889821,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr12:24889813..24889821, -
1.1e-59FFCP PHASE1:Hg19::chr9:74996801..74996811,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:74996801..74996811, -
1.1e-59FFCP PHASE1:Hg19::chr3:195306434..195306439,-#_1ac1f7fee605574c13bf5a8740d5fd0fp10@APOD
1.1e-59FFCP PHASE2:Hg19::chr15:43323789..43323811,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr15:43323789..43323811, -
1.1e-59FFCP PHASE1:Hg19::chr20:22771722..22771733,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr20:22771722..22771733, +
1.1e-59FFCP PHASE2:Hg19::chr6:484706..484722,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:484706..484722, +
1.1e-59FFCP PHASE2:Hg19::chr4:167982726..167982736,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167982726..167982736, -
1.1e-59FFCP PHASE1:Hg19::chr2:11264766..11264775,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:11264766..11264775, -
1.1e-59FFCP PHASE1:Hg19::chr19:49488905..49488920,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:49488905..49488920, -
1.1e-59FFCP PHASE2:Hg19::chr8:59790413..59790418,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr8:59790413..59790418, -
1.1e-59FFCP PHASE2:Hg19::chr10:61574767..61574776,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:61574767..61574776, -
1.1e-59FFCP PHASE1:Hg19::chr6:138023078..138023089,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:138023078..138023089, -
1.1e-59FFCP PHASE1:Hg19::chr8:38216859..38216889,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr8:38216859..38216889, -
1.1e-59FFCP PHASE2:Hg19::chr2:148296759..148296767,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:148296759..148296767, +
1.1e-59FFCP PHASE2:Hg19::chr10:120921294..120921306,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:120921294..120921306, -
1.1e-59FFCP PHASE1:Hg19::chr9:94933452..94933457,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:94933452..94933457, +
1.1e-59FFCP PHASE2:Hg19::chr12:24889813..24889821,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr12:24889813..24889821, -
1.1e-59FFCP PHASE1:Hg19::chr16:86326031..86326033,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr16:86326031..86326033, +
1.1e-59FFCP PHASE2:Hg19::chr7:45954712..45954720,-#_1ac1f7fee605574c13bf5a8740d5fd0fp41@IGFBP3
1.1e-59FFCP PHASE2:Hg19::chr12:77198556..77198565,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr12:77198556..77198565, +
1.1e-59FFCP PHASE1:Hg19::chr15:43323789..43323811,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr15:43323789..43323811, -
1.1e-59FFCP PHASE2:Hg19::chrX:146004822..146004839,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chrX:146004822..146004839, -
1.1e-59FFCP PHASE1:Hg19::chr10:15035430..15035449,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:15035430..15035449, -
1.1e-59FFCP PHASE1:Hg19::chr4:167957459..167957470,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167957459..167957470, -
1.1e-59FFCP PHASE1:Hg19::chr21:43934923..43934932,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr21:43934923..43934932, +
1.1e-59FFCP PHASE2:Hg19::chr6:135486309..135486312,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:135486309..135486312, +
1.1e-59FFCP PHASE2:Hg19::chr7:135705408..135705462,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:135705408..135705462, +
1.1e-59FFCP PHASE2:Hg19::chr21:18180040..18180058,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr21:18180040..18180058, -
1.1e-59FFCP PHASE2:Hg19::chr6:88854777..88854802,-#_1ac1f7fee605574c13bf5a8740d5fd0fp16@CNR1
1.1e-59FFCP PHASE2:Hg19::chr3:45926373..45926388,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:45926373..45926388, -
1.1e-59FFCP PHASE2:Hg19::chr19:18603318..18603327,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:18603318..18603327, -
1.1e-59FFCP PHASE1:Hg19::chr2:148284480..148284484,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:148284480..148284484, +
1.1e-59FFCP PHASE1:Hg19::chr4:167791926..167791930,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167791926..167791930, -
1.1e-59FFCP PHASE2:Hg19::chr1:168204286..168204299,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr1:168204286..168204299, +
1.1e-59FFCP PHASE2:Hg19::chr19:53511768..53511784,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:53511768..53511784, -
1.1e-59FFCP PHASE2:Hg19::chr14:76017349..76017357,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr14:76017349..76017357, -
1.1e-59FFCP PHASE2:Hg19::chr3:111311854..111311862,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:111311854..111311862, -
1.1e-59FFCP PHASE2:Hg19::chr10:15035430..15035449,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:15035430..15035449, -
1.1e-59FFCP PHASE1:Hg19::chr1:234765062..234765067,+#_1ac1f7fee605574c13bf5a8740d5fd0fp6@LINC00184
1.1e-59FFCP PHASE2:Hg19::chr3:195306394..195306429,-#_1ac1f7fee605574c13bf5a8740d5fd0fp5@APOD
1.1e-59FFCP PHASE1:Hg19::chr19:53510877..53510886,+#_1ac1f7fee605574c13bf5a8740d5fd0fp2@uc002qao.2
1.1e-59FFCP PHASE1:Hg19::chr14:76017349..76017357,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr14:76017349..76017357, -
1.1e-59FFCP PHASE2:Hg19::chrX:10129363..10129369,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chrX:10129363..10129369, +
1.1e-59FFCP PHASE2:Hg19::chr1:234631379..234631392,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr1:234631379..234631392, -
1.1e-59FFCP PHASE1:Hg19::chr21:18178842..18178867,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr21:18178842..18178867, -
1.1e-59FFCP PHASE2:Hg19::chr19:49488858..49488869,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:49488858..49488869, -
1.1e-59FFCP PHASE1:Hg19::chr9:74995205..74995211,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:74995205..74995211, -
1.1e-59FFCP PHASE1:Hg19::chr3:45926401..45926410,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:45926401..45926410, -
1.1e-59FFCP PHASE2:Hg19::chr4:167951900..167951907,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167951900..167951907, -
1.1e-59FFCP PHASE2:Hg19::chr3:189266272..189266296,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:189266272..189266296, -
1.1e-59FFCP PHASE1:Hg19::chr2:45063061..45063082,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:45063061..45063082, -
1.1e-59FFCP PHASE2:Hg19::chr6:149464325..149464336,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:149464325..149464336, -
1.1e-59FFCP PHASE2:Hg19::chr2:228216610..228216617,+#_1ac1f7fee605574c13bf5a8740d5fd0fp18@MFF
1.1e-59FFCP PHASE2:Hg19::chr1:146746588..146746604,+#_1ac1f7fee605574c13bf5a8740d5fd0fp5@CHD1L
1.1e-59FFCP PHASE1:Hg19::chr3:157301317..157301362,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:157301317..157301362, -
1.1e-59FFCP PHASE1:Hg19::chr11:128154946..128154955,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr11:128154946..128154955, +
1.1e-59FFCP PHASE2:Hg19::chr4:36393818..36393829,-#_1ac1f7fee605574c13bf5a8740d5fd0fp2@ENST00000504344
1.1e-59FFCP PHASE2:Hg19::chr19:42682291..42682301,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:42682291..42682301, -
1.1e-59FFCP PHASE2:Hg19::chr7:106397647..106397655,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:106397647..106397655, +
1.1e-59FFCP PHASE1:Hg19::chr6:491208..491217,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:491208..491217, -
1.1e-59FFCP PHASE1:Hg19::chr22:20105576..20105585,+#_1ac1f7fee605574c13bf5a8740d5fd0fp11@RANBP1
1.1e-59FFCP PHASE1:Hg19::chr1:212870782..212870788,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr1:212870782..212870788, -
1.1e-59FFCP PHASE2:Hg19::chr8:38216859..38216889,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr8:38216859..38216889, -
1.1e-59FFCP PHASE1:Hg19::chr7:106363986..106363994,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:106363986..106363994, -
1.1e-59FFCP PHASE2:Hg19::chr20:22771722..22771733,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr20:22771722..22771733, +
1.1e-59FFCP PHASE1:Hg19::chr2:15633244..15633249,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:15633244..15633249, +
1.1e-59FFCP PHASE1:Hg19::chr7:142250880..142250889,-#_1ac1f7fee605574c13bf5a8740d5fd0fp4@AF430683, p4@AF430684, p4@AF430685
1.1e-59FFCP PHASE1:Hg19::chr4:167938808..167938815,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167938808..167938815, -
1.1e-59FFCP PHASE2:Hg19::chr2:148282641..148282654,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:148282641..148282654, +
1.1e-59FFCP PHASE2:Hg19::chr14:76957775..76957781,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr14:76957775..76957781, +

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