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{{UBERON
{{UBERON
|id=UBERON:0007806
|alt_id=
|name=connecting stalk
|namespace=
|def="A bridge of mesoderm connecting the caudal end of the young embryo with the trophoblastic tissues; the precursor of the umbilical cord." [Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/]
|xref=BTO:0004705;;ncithesaurus:Connecting_Stalk
|is_a=UBERON:0000478;;UBERON:0004120
|synonym=
|comment=todo - this is currently defined as a bridge of mesoderm, but in EHDAA2 is extraembryonic structure split into mesoderm and blood vessels
|comment=todo - this is currently defined as a bridge of mesoderm, but in EHDAA2 is extraembryonic structure split into mesoderm and blood vessels
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A bridge of mesoderm connecting the caudal end of the young embryo with the trophoblastic tissues; the precursor of the umbilical cord." [Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/]
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0005728
|develops_from=UBERON:0005728
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0007806
|is_a=UBERON:0000478 ;;UBERON:0004120
|is_obsolete=
|located_in=
|located_in=
|name=connecting stalk
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=BTO:0004705;;ncithesaurus:Connecting_Stalk
}}
}}

Latest revision as of 18:03, 12 September 2014

Name:connecting stalk
Namespace:FANTOM
Definition:"A bridge of mesoderm connecting the caudal end of the young embryo with the trophoblastic tissues; the precursor of the umbilical cord." [Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/]
Xrefs:
links:

BTO:0004705

ncithesaurus:Connecting_Stalk
Comments:todo - this is currently defined as a bridge of mesoderm, but in EHDAA2 is extraembryonic structure split into mesoderm and blood vessels

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000478(extraembryonic structure),UBERON:0004120(mesoderm-derived structure)
develops_from:UBERON:0005728(extraembryonic mesoderm)



Children

develops from:UBERON:0002331 (umbilical cord)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007806 (connecting stalk), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.79e-79FFCP PHASE2:Hg19::chr10:120921270..120921282,-#_14bb33615039afdf9052037a7d91f708p@chr10:120921270..120921282, -
5.79e-79FFCP PHASE2:Hg19::chr7:135931480..135931486,+#_14bb33615039afdf9052037a7d91f708p@chr7:135931480..135931486, +
5.79e-79FFCP PHASE1:Hg19::chr10:120921270..120921282,-#_14bb33615039afdf9052037a7d91f708p@chr10:120921270..120921282, -
5.79e-79FFCP PHASE1:Hg19::chr7:135931480..135931486,+#_14bb33615039afdf9052037a7d91f708p@chr7:135931480..135931486, +
2.16e-63FFCP PHASE1:Hg19::chr1:205744117..205744127,-#_f6db00c50a1cf20f61c2f87d1ff10a42p8@RAB7L1
2.16e-63FFCP PHASE2:Hg19::chr1:205744117..205744127,-#_f6db00c50a1cf20f61c2f87d1ff10a42p8@RAB7L1
1.1e-59FFCP PHASE1:Hg19::chr17:1985278..1985290,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr17:1985278..1985290, -
1.1e-59FFCP PHASE2:Hg19::chr8:59970765..59970787,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr8:59970765..59970787, -
1.1e-59FFCP PHASE1:Hg19::chr12:130530197..130530209,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr12:130530197..130530209, -
1.1e-59FFCP PHASE2:Hg19::chr20:33691683..33691699,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr20:33691683..33691699, +
1.1e-59FFCP PHASE2:Hg19::chr7:106397597..106397610,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:106397597..106397610, +
1.1e-59FFCP PHASE1:Hg19::chr10:15035404..15035424,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:15035404..15035424, -
1.1e-59FFCP PHASE2:Hg19::chr6:31150998..31151005,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:31150998..31151005, -
1.1e-59FFCP PHASE2:Hg19::chr3:153038353..153038371,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:153038353..153038371, +
1.1e-59FFCP PHASE1:Hg19::chr6:484706..484722,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:484706..484722, +
1.1e-59FFCP PHASE1:Hg19::chr4:167982726..167982736,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167982726..167982736, -
1.1e-59FFCP PHASE2:Hg19::chr6:135486487..135486491,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:135486487..135486491, +
1.1e-59FFCP PHASE2:Hg19::chr5:146717844..146717861,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr5:146717844..146717861, +
1.1e-59FFCP PHASE2:Hg19::chr2:74682916..74682923,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:74682916..74682923, +
1.1e-59FFCP PHASE2:Hg19::chr2:15651894..15651904,-#_1ac1f7fee605574c13bf5a8740d5fd0fp4@NBAS
1.1e-59FFCP PHASE1:Hg19::chr6:87324200..87324219,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:87324200..87324219, +
1.1e-59FFCP PHASE1:Hg19::chr3:45926344..45926350,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:45926344..45926350, -
1.1e-59FFCP PHASE2:Hg19::chr4:167944606..167944610,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167944606..167944610, -
1.1e-59FFCP PHASE2:Hg19::chr8:56618992..56618998,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr8:56618992..56618998, +
1.1e-59FFCP PHASE2:Hg19::chr2:228216568..228216578,+#_1ac1f7fee605574c13bf5a8740d5fd0fp15@MFF
1.1e-59FFCP PHASE1:Hg19::chr6:135486309..135486312,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:135486309..135486312, +
1.1e-59FFCP PHASE1:Hg19::chr2:148296759..148296767,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:148296759..148296767, +
1.1e-59FFCP PHASE2:Hg19::chr2:148278743..148278751,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:148278743..148278751, +
1.1e-59FFCP PHASE2:Hg19::chr7:135738522..135738525,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:135738522..135738525, -
1.1e-59FFCP PHASE2:Hg19::chr17:40021018..40021028,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr17:40021018..40021028, +
1.1e-59FFCP PHASE2:Hg19::chr12:24770576..24770594,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr12:24770576..24770594, -
1.1e-59FFCP PHASE2:Hg19::chr11:129247710..129247730,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr11:129247710..129247730, +
1.1e-59FFCP PHASE1:Hg19::chr7:45954712..45954720,-#_1ac1f7fee605574c13bf5a8740d5fd0fp41@IGFBP3
1.1e-59FFCP PHASE2:Hg19::chr9:75001932..75001956,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:75001932..75001956, -
1.1e-59FFCP PHASE1:Hg19::chrX:146004822..146004839,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chrX:146004822..146004839, -
1.1e-59FFCP PHASE2:Hg19::chr19:3149800..3149805,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:3149800..3149805, +
1.1e-59FFCP PHASE1:Hg19::chr7:135705408..135705462,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:135705408..135705462, +
1.1e-59FFCP PHASE1:Hg19::chr21:18180040..18180058,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr21:18180040..18180058, -
1.1e-59FFCP PHASE2:Hg19::chr4:85688154..85688161,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:85688154..85688161, -
1.1e-59FFCP PHASE2:Hg19::chr3:169775687..169775690,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:169775687..169775690, -
1.1e-59FFCP PHASE2:Hg19::chr12:130530197..130530209,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr12:130530197..130530209, -
1.1e-59FFCP PHASE1:Hg19::chr8:56625901..56625913,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr8:56625901..56625913, +
1.1e-59FFCP PHASE1:Hg19::chr2:228216588..228216609,+#_1ac1f7fee605574c13bf5a8740d5fd0fp10@MFF
1.1e-59FFCP PHASE1:Hg19::chr19:18603318..18603327,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:18603318..18603327, -
1.1e-59FFCP PHASE2:Hg19::chr6:138023154..138023161,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:138023154..138023161, -
1.1e-59FFCP PHASE2:Hg19::chr5:162742836..162742845,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr5:162742836..162742845, -
1.1e-59FFCP PHASE2:Hg19::chr3:111331533..111331540,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:111331533..111331540, -
1.1e-59FFCP PHASE2:Hg19::chr4:182684840..182684848,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:182684840..182684848, +
1.1e-59FFCP PHASE2:Hg19::chr3:33024873..33024877,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:33024873..33024877, -
1.1e-59FFCP PHASE2:Hg19::chr19:10983266..10983276,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:10983266..10983276, -
1.1e-59FFCP PHASE1:Hg19::chr1:168204286..168204299,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr1:168204286..168204299, +
1.1e-59FFCP PHASE1:Hg19::chr19:53511768..53511784,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:53511768..53511784, -
1.1e-59FFCP PHASE1:Hg19::chr3:111311854..111311862,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:111311854..111311862, -
1.1e-59FFCP PHASE1:Hg19::chr3:195306394..195306429,-#_1ac1f7fee605574c13bf5a8740d5fd0fp5@APOD
1.1e-59FFCP PHASE2:Hg19::chr6:137816618..137816627,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:137816618..137816627, -
1.1e-59FFCP PHASE2:Hg19::chr15:43323772..43323785,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr15:43323772..43323785, -
1.1e-59FFCP PHASE1:Hg19::chrX:10129363..10129369,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chrX:10129363..10129369, +
1.1e-59FFCP PHASE1:Hg19::chr20:22771662..22771675,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr20:22771662..22771675, +
1.1e-59FFCP PHASE1:Hg19::chr1:234631379..234631392,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr1:234631379..234631392, -
1.1e-59FFCP PHASE2:Hg19::chr6:484679..484683,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:484679..484683, +
1.1e-59FFCP PHASE1:Hg19::chr19:49488858..49488869,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:49488858..49488869, -
1.1e-59FFCP PHASE2:Hg19::chr2:228216837..228216846,+#_1ac1f7fee605574c13bf5a8740d5fd0fp17@MFF
1.1e-59FFCP PHASE2:Hg19::chr10:61574724..61574737,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:61574724..61574737, -
1.1e-59FFCP PHASE1:Hg19::chr15:43323772..43323785,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr15:43323772..43323785, -
1.1e-59FFCP PHASE2:Hg19::chr7:106363901..106363915,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:106363901..106363915, -
1.1e-59FFCP PHASE1:Hg19::chr4:167951900..167951907,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:167951900..167951907, -
1.1e-59FFCP PHASE1:Hg19::chr3:189266272..189266296,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:189266272..189266296, -
1.1e-59FFCP PHASE2:Hg19::chr2:65209811..65209818,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:65209811..65209818, +
1.1e-59FFCP PHASE2:Hg19::chr2:148293218..148293252,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:148293218..148293252, +
1.1e-59FFCP PHASE2:Hg19::chr1:177159780..177159790,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr1:177159780..177159790, -
1.1e-59FFCP PHASE2:Hg19::chr14:76957827..76957835,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr14:76957827..76957835, +
1.1e-59FFCP PHASE1:Hg19::chr6:149464325..149464336,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:149464325..149464336, -
1.1e-59FFCP PHASE1:Hg19::chr1:146746588..146746604,+#_1ac1f7fee605574c13bf5a8740d5fd0fp5@CHD1L
1.1e-59FFCP PHASE1:Hg19::chr10:61574767..61574776,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:61574767..61574776, -
1.1e-59FFCP PHASE1:Hg19::chr4:36393818..36393829,-#_1ac1f7fee605574c13bf5a8740d5fd0fp2@ENST00000504344
1.1e-59FFCP PHASE1:Hg19::chr19:42682291..42682301,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:42682291..42682301, -
1.1e-59FFCP PHASE2:Hg19::chr8:42248931..42248936,+#_1ac1f7fee605574c13bf5a8740d5fd0fp6@VDAC3
1.1e-59FFCP PHASE2:Hg19::chr3:119279086..119279095,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:119279086..119279095, +
1.1e-59FFCP PHASE1:Hg19::chr7:106397647..106397655,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:106397647..106397655, +
1.1e-59FFCP PHASE2:Hg19::chr7:45954667..45954675,-#_1ac1f7fee605574c13bf5a8740d5fd0fp42@IGFBP3
1.1e-59FFCP PHASE1:Hg19::chr2:148282641..148282654,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:148282641..148282654, +
1.1e-59FFCP PHASE1:Hg19::chr14:76957827..76957835,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr14:76957827..76957835, +
1.1e-59FFCP PHASE1:Hg19::chr10:120921294..120921306,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:120921294..120921306, -
1.1e-59FFCP PHASE2:Hg19::chr1:234765107..234765117,+#_1ac1f7fee605574c13bf5a8740d5fd0fp7@LINC00184
1.1e-59FFCP PHASE2:Hg19::chr19:53511749..53511757,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr19:53511749..53511757, -
1.1e-59FFCP PHASE2:Hg19::chr10:111805643..111805655,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:111805643..111805655, -
1.1e-59FFCP PHASE2:Hg19::chr7:135705379..135705388,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr7:135705379..135705388, +
1.1e-59FFCP PHASE2:Hg19::chr21:18179795..18179798,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr21:18179795..18179798, -
1.1e-59FFCP PHASE1:Hg19::chr8:59790413..59790418,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr8:59790413..59790418, -
1.1e-59FFCP PHASE2:Hg19::chr9:74995293..74995311,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:74995293..74995311, -
1.1e-59FFCP PHASE2:Hg19::chr10:30336924..30336935,-#_1ac1f7fee605574c13bf5a8740d5fd0fp15@KIAA1462
1.1e-59FFCP PHASE2:Hg19::chr6:87324200..87324219,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:87324200..87324219, +
1.1e-59FFCP PHASE2:Hg19::chr3:45926344..45926350,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:45926344..45926350, -
1.1e-59FFCP PHASE1:Hg19::chr3:180050773..180050786,+#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr3:180050773..180050786, +
1.1e-59FFCP PHASE1:Hg19::chr21:18170731..18170736,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr21:18170731..18170736, -
1.1e-59FFCP PHASE2:Hg19::chr4:6191002..6191007,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr4:6191002..6191007, -
1.1e-59FFCP PHASE1:Hg19::chr9:74986248..74986275,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr9:74986248..74986275, -
1.1e-59FFCP PHASE2:Hg19::chr6:138023015..138023024,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr6:138023015..138023024, -
1.1e-59FFCP PHASE2:Hg19::chr10:15035404..15035424,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr10:15035404..15035424, -
1.1e-59FFCP PHASE1:Hg19::chr2:53245239..53245255,-#_1ac1f7fee605574c13bf5a8740d5fd0fp@chr2:53245239..53245255, -

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