FFCP PHASE1:Hg19::chr14:22925556..22925565,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc001wdz.3,uc010tms.1_5end | |association_with_transcript=0bp_to_uc001wdz.3,uc010tms.1_5end | ||
|cluster_id=chr14:22925556..22925565,+ | |||
|coexpression_cluster_id=C28 | |||
|description=CAGE_peak_3_at_uc001wdz.3_5end,CAGE_peak_3_at_uc010tms.1_5end | |description=CAGE_peak_3_at_uc001wdz.3_5end,CAGE_peak_3_at_uc010tms.1_5end | ||
|id=chr14:22925556..22925565,+ | |id=chr14:22925556..22925565,+ | ||
|ontology_enrichment_celltype=CL:0000623!3.21e-12!3;CL:0000825!3.21e-12!3;CL:0000898!4.83e-12!3;CL:0000624!2.51e-10!6;CL:0000791!1.42e-09!18;CL:0000789!1.42e-09!18;CL:0002420!1.42e-09!18;CL:0002419!1.42e-09!18;CL:0000790!1.42e-09!18;CL:0000893!8.18e-09!2;CL:0002489!8.18e-09!2;CL:0000809!8.18e-09!2;CL:0000808!8.18e-09!2;CL:0000894!8.18e-09!2;CL:0000806!8.18e-09!2;CL:0000807!8.18e-09!2;CL:0000805!8.18e-09!2;CL:0002425!8.18e-09!2;CL:0000815!1.19e-08!2;CL:0000792!1.19e-08!2;CL:0002677!1.19e-08!2 | |ontology_enrichment_celltype=CL:0000623!3.21e-12!3;CL:0000825!3.21e-12!3;CL:0000898!4.83e-12!3;CL:0000624!2.51e-10!6;CL:0000791!1.42e-09!18;CL:0000789!1.42e-09!18;CL:0002420!1.42e-09!18;CL:0002419!1.42e-09!18;CL:0000790!1.42e-09!18;CL:0000893!8.18e-09!2;CL:0002489!8.18e-09!2;CL:0000809!8.18e-09!2;CL:0000808!8.18e-09!2;CL:0000894!8.18e-09!2;CL:0000806!8.18e-09!2;CL:0000807!8.18e-09!2;CL:0000805!8.18e-09!2;CL:0002425!8.18e-09!2;CL:0000815!1.19e-08!2;CL:0000792!1.19e-08!2;CL:0002677!1.19e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:0002127;5.05e-34;1!CL:0000911;5.05e-34;1!CL:0000814;5.05e-34;1!CL:0000791;2.51e-08;18!CL:0000789;2.51e-08;18!CL:0002419;2.51e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0002127,3.61e-34,1;CL:0000914,3.61e-34,1;CL:0000911,3.61e-34,1;CL:0000814,3.61e-34,1;CL:0002042,3.61e-34,1;CL:0002039,3.61e-34,1;CL:0002040,3.61e-34,1;CL:0002041,3.61e-34,1;CL:0000893,7.67e-18,2;CL:0002489,7.67e-18,2;CL:0000809,7.67e-18,2;CL:0000808,7.67e-18,2;CL:0000894,7.67e-18,2;CL:0000806,7.67e-18,2;CL:0000807,7.67e-18,2;CL:0000805,7.67e-18,2;CL:0002425,7.67e-18,2;CL:0000791,2.25e-08,18;CL:0000789,2.25e-08,18;CL:0002420,2.25e-08,18;CL:0002419,2.25e-08,18;CL:0000790,2.25e-08,18 | |||
|ontology_enrichment_development_v019=CL:0002425;9.07e-18;2!CL:0000790;2.51e-08;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!3.44e-19!7;UBERON:0002370!2.77e-16!4;UBERON:0005058!2.77e-16!4;UBERON:0009113!2.77e-16!4;UBERON:0003295!2.77e-16!4;UBERON:0005562!2.77e-16!4;UBERON:0001042!3.25e-13!10;UBERON:0009145!3.25e-13!10;UBERON:0006562!5.99e-12!11;UBERON:0003351!7.37e-11!6;UBERON:0000178!2.50e-08!15;UBERON:0000179!2.50e-08!15;UBERON:0000463!2.50e-08!15 | |ontology_enrichment_uberon=UBERON:0004177!3.44e-19!7;UBERON:0002370!2.77e-16!4;UBERON:0005058!2.77e-16!4;UBERON:0009113!2.77e-16!4;UBERON:0003295!2.77e-16!4;UBERON:0005562!2.77e-16!4;UBERON:0001042!3.25e-13!10;UBERON:0009145!3.25e-13!10;UBERON:0006562!5.99e-12!11;UBERON:0003351!7.37e-11!6;UBERON:0000178!2.50e-08!15;UBERON:0000179!2.50e-08!15;UBERON:0000463!2.50e-08!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.45e-66;2!UBERON:0005058;1.45e-66;2!UBERON:0009113;1.45e-66;2!UBERON:0004177;2.08e-27;5!UBERON:0005057;2.08e-27;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,2.01e-74,4;UBERON:0005058,2.01e-74,4;UBERON:0009113,2.01e-74,4;UBERON:0003295,2.01e-74,4;UBERON:0005562,2.01e-74,4;UBERON:0003351,5.37e-50,6;UBERON:0004177,5.22e-43,7;UBERON:0005057,5.22e-43,7;UBERON:0000974,2.06e-30,10;UBERON:0003408,2.06e-30,10;UBERON:0001042,2.06e-30,10;UBERON:0009145,2.06e-30,10;UBERON:0006562,9.75e-28,11;UBERON:0009722,9.75e-28,11;UBERON:0007690,9.75e-28,11;UBERON:0008814,2.64e-17,18;UBERON:0001557,1.94e-16,19;UBERON:0004807,2.06e-11,28;UBERON:0000077,4.80e-11,29;UBERON:0002368,2.81e-09,35;UBERON:0000949,2.28e-07,45;UBERON:0000072,4.40e-07,47 | |||
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| ||
|short_description=p3@uc001wdz.3,p3@uc010tms.1 | |short_description=p3@uc001wdz.3,p3@uc010tms.1 | ||
}} | }} |
Latest revision as of 19:12, 24 July 2015
Short description: | p3@uc001wdz.3, p3@uc010tms.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_uc001wdz.3_5end, CAGE_peak_3_at_uc010tms.1_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | 0bp_to_uc001wdz.3, uc010tms.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
innate effector T cell | 3.61e-34 | 1 |
immature NK T cell | 3.61e-34 | 1 |
effector T cell | 3.61e-34 | 1 |
mature NK T cell | 3.61e-34 | 1 |
immature NK T cell stage IV | 3.61e-34 | 1 |
immature NK T cell stage I | 3.61e-34 | 1 |
immature NK T cell stage II | 3.61e-34 | 1 |
immature NK T cell stage III | 3.61e-34 | 1 |
thymocyte | 7.67e-18 | 2 |
double negative thymocyte | 7.67e-18 | 2 |
double-positive, alpha-beta thymocyte | 7.67e-18 | 2 |
DN4 thymocyte | 7.67e-18 | 2 |
DN1 thymic pro-T cell | 7.67e-18 | 2 |
DN2 thymocyte | 7.67e-18 | 2 |
DN3 thymocyte | 7.67e-18 | 2 |
immature single positive thymocyte | 7.67e-18 | 2 |
early T lineage precursor | 7.67e-18 | 2 |
mature alpha-beta T cell | 2.25e-08 | 18 |
alpha-beta T cell | 2.25e-08 | 18 |
immature T cell | 2.25e-08 | 18 |
mature T cell | 2.25e-08 | 18 |
immature alpha-beta T cell | 2.25e-08 | 18 |
Ontology term | p-value | n |
---|---|---|
thymus | 2.01e-74 | 4 |
hemolymphoid system gland | 2.01e-74 | 4 |
thymic region | 2.01e-74 | 4 |
pharyngeal gland | 2.01e-74 | 4 |
thymus primordium | 2.01e-74 | 4 |
pharyngeal epithelium | 5.37e-50 | 6 |
hemopoietic organ | 5.22e-43 | 7 |
immune organ | 5.22e-43 | 7 |
neck | 2.06e-30 | 10 |
gland of gut | 2.06e-30 | 10 |
chordate pharynx | 2.06e-30 | 10 |
pharyngeal region of foregut | 2.06e-30 | 10 |
pharynx | 9.75e-28 | 11 |
entire pharyngeal arch endoderm | 9.75e-28 | 11 |
early pharyngeal endoderm | 9.75e-28 | 11 |
pharyngeal arch system | 2.64e-17 | 18 |
upper respiratory tract | 1.94e-16 | 19 |
respiratory system epithelium | 2.06e-11 | 28 |
mixed endoderm/mesoderm-derived structure | 4.80e-11 | 29 |
endocrine gland | 2.81e-09 | 35 |
endocrine system | 2.28e-07 | 45 |
segment of respiratory tract | 4.40e-07 | 47 |