FFCP PHASE1:Hg19::chr17:38610311..38610321,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr17:38610311..38610321,- | |||
|coexpression_cluster_id=C353 | |||
|description=CAGE_peak_at_chr17:38610311..38610321,- | |||
|id=chr17:38610311..38610321,- | |||
|ontology_enrichment_celltype=CL:0000055!1.37e-14!180;CL:0000057!6.31e-12!75;CL:0002334!2.07e-08!12;CL:0000222!6.34e-07!119;CL:0000183!9.74e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000135;1.98e-15;3!CL:0000388;1.98e-15;3!CL:0002564;1.76e-14;3!CL:0000153;6.39e-14;9!CL:0000447;6.39e-14;9!CL:0000499;3.55e-10;28!CL:0000327;3.22e-08;15!CL:0000138;4.10e-08;6!CL:0000214;9.24e-08;3!CL:0002615;4.32e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000135,2.10e-15,3;CL:0000388,2.10e-15,3;CL:0002564,3.11e-14,3;CL:0000153,6.97e-14,9;CL:0000447,6.97e-14,9;CL:0000499,3.76e-10,28;CL:0000327,3.38e-08,15;CL:0000058,4.47e-08,6;CL:0000138,4.47e-08,6;CL:0000214,9.13e-08,3;CL:0002320,3.99e-07,361;CL:0002615,7.53e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;1.76e-14;3!DOID:127;1.76e-14;3!DOID:0060072;5.49e-11;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,1.78e-14,3;DOID:127,1.78e-14,3;DOID:0060072,5.52e-11,4 | |||
|ontology_enrichment_uberon=UBERON:0005256!2.31e-08!143;UBERON:0002100!3.87e-08!216;UBERON:0000914!1.44e-07!83;UBERON:0002329!1.44e-07!83;UBERON:0003077!1.44e-07!83;UBERON:0003059!1.44e-07!83;UBERON:0007282!1.44e-07!83;UBERON:0009618!1.44e-07!83;UBERON:0007285!1.44e-07!83;UBERON:0004290!6.67e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0004905;2.74e-21;8!UBERON:0000982;2.74e-21;8!UBERON:0004770;2.74e-21;8!UBERON:0007846;1.98e-15;3!UBERON:0000043;1.98e-15;3!UBERON:0007845;1.98e-15;3!UBERON:0011135;2.57e-15;5!UBERON:0002216;2.57e-15;5!UBERON:0011134;2.57e-15;5!UBERON:0002209;2.57e-15;5!UBERON:0002213;2.57e-15;5!UBERON:0007844;2.57e-15;5!UBERON:0011138;2.57e-15;5!UBERON:0001130;2.57e-15;5!UBERON:0001066;2.57e-15;5!UBERON:0001468;2.57e-15;5!UBERON:0002242;1.76e-14;3!UBERON:0000075;2.04e-13;16!UBERON:0004457;3.35e-13;9!UBERON:0000042;3.35e-13;9!UBERON:0005406;3.99e-11;2!UBERON:0001434;3.17e-10;36!UBERON:0004765;6.66e-08;26!UBERON:0006915;9.24e-08;3!UBERON:0007616;9.24e-08;3!UBERON:0002217;9.24e-08;3!UBERON:0002018;9.24e-08;3!UBERON:0003688;1.79e-07;6!UBERON:0002358;1.79e-07;6!UBERON:0003684;1.79e-07;6!UBERON:0001178;1.79e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004905,3.75e-21,8;UBERON:0000982,3.75e-21,8;UBERON:0004770,3.75e-21,8;UBERON:0007846,2.10e-15,3;UBERON:0000043,2.10e-15,3;UBERON:0007845,2.10e-15,3;UBERON:0011135,3.62e-15,5;UBERON:0002216,3.62e-15,5;UBERON:0011134,3.62e-15,5;UBERON:0002209,3.62e-15,5;UBERON:0002213,3.62e-15,5;UBERON:0005856,3.62e-15,5;UBERON:0005866,3.62e-15,5;UBERON:0005863,3.62e-15,5;UBERON:0007844,3.62e-15,5;UBERON:0011138,3.62e-15,5;UBERON:0001130,3.62e-15,5;UBERON:0001066,3.62e-15,5;UBERON:0001468,3.62e-15,5;UBERON:0002242,3.11e-14,3;UBERON:0003068,3.11e-14,3;UBERON:0002328,3.11e-14,3;UBERON:0004880,3.11e-14,3;UBERON:0000075,1.86e-13,16;UBERON:0011137,2.36e-11,14;UBERON:0005406,3.64e-11,2;UBERON:0004457,9.61e-10,12;UBERON:0000042,9.61e-10,12;UBERON:0006915,9.13e-08,3;UBERON:0007616,9.13e-08,3;UBERON:0002217,9.13e-08,3;UBERON:0002018,9.13e-08,3;UBERON:0003688,2.30e-07,6;UBERON:0002358,2.30e-07,6;UBERON:0003684,2.30e-07,6;UBERON:0001178,2.30e-07,6;UBERON:0002384,9.55e-07,371 | |||
|phase1_expression=1.45342703416445,0.856402095563933,1.26858963686374,1.0007329835313,0.446961094427288,2.61701557230111,0,0,0.783556884599516,0,0,0,0,0.866364470720326,2.65117900582333,0,0.602694528023977,0.730310090387373,0,0,0.408001382488506,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0.255725123687061,2.53007406669196,2.00535164254356,5.06962816362883,0,0,0,0.221729397462564,0.351339142772504,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0.825354125820202,0,0.258416759169329,0.35576626268671,0,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,1.53316637465883,0,0.183201743930407,0,0,0,0.496971951695318,0,0,0,0.354668382198357,0.560677600142307,0,0.98667019366864,0.311211035399766,0.269421344139376,0.163461903113459,0,0.576175924479999,0,0.936480230490962,0.570471821544449,0.298897361103602,0,0,0,0.61246251376468,0.491337269247072,0.723280468230358,0,0.741800787835671,0,0.718618141816238,0,0,0,0,1.83892677479412,1.05166641234618,0.226864366320042,0,0.85422955527427,1.27159140695737,0,0.103052529238439,0,0.558350568994769,0,0.0974370051611986,0,0.184099797284599,0,0,0.10075209822764,0.169560592310488,0,0,0,0.121973706129595,0,0,0,0.252320850875628,0.36497735907583,1.56449532329816,0.643240938192885,0,0.928735856063958,1.44375896333917,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0.4115740113314,0,1.26755034821831,0.982827216677626,1.18157981336281,0,0,0,0,0,0,0.185176890317059,0,0,0,0,0,0,0.462985512576611,0,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22001485746285,0.129271715757778,0,0,0,2.08014873822732,0.257207374262142,0,1.8649552531127,0.142977993658148,0.542621605391443,0,0,0.710783897485092,0.791951872933429,0.602878754119172,0,1.3996218765488,0,0,0,0.239624855491583,1.14861935834114,0,0.289562613335158,0.61642896765115,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,1.34960640891054,1.00034104211935,1.35632511849868,0.207970861530807,0.178428988797162,0.315404830067869,0.468565659970853,0.300946099727719,0,0,1.32845119707087,0.368738337083406,0.173767228936166,0.195801157462741,0.686286847621712,0,0,0,0.303127571446259,0,0.604780586659361,0.248107807818777,0.306923946576125,0.561320188866147,0.256278298511402,1.53512174720011,0.804269605718038,4.45254199334973,0,1.06537035187876,0.246381468041427,1.03850885836724,0.348631135379878,0,0,0,0,0.728364672026868,0.131124414959424,0,0,0.784349769176855,0,0,0,0.170093705276516,0,1.54227252690289,0,0.501689773854853,0.254876273045038,0.831076008928724,0.223874754722178,0,0,0,0.328014645699706,0,0,0,0,0,0,0,0.676695028044854,0.462145851343933,0.15350367472613,0,0.214840489736547,0.145016693914229,0.0852266274161009,0.178064071293475,0,0,0,0,0.464845549297286,0,0,0.308033580176089,0,0,0.37064843820784,0,0.372158369359667,1.58189712359363,0.38126038784765,0.255897791311334,0,0.95460974377781,0,0,0.274537029736055,0,0.202182481573316,0,0.421258456238981,0,0.243713489631284,0,0.545999645631943,0.424216295861138,2.26016233240486,0.551365343546124,0,0,0,0,0,0.30982349809975,0,0,0,0,0.709522128141196,5.48879851773927,3.29294892959902,0.379473173765715,0.349934720244983,0,0,0,0.0941438007767792,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333926115068718,0,0,0.19924798825107,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0.969332746095218,0,0,0.260427761085233,0,0,0.1137934482855,0,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0.252746318513952,0,0,0.664653872707185,0,0,1.19472429772959,0,0,0,0,0.0870592065804026,0.34945333648406,0,0,0,0,0,0,0.677942222341597,0,0,0,0,0.0801588202515337,0.426905989478705,0.39961921916426,0,0,0,0,0.124252535565433,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0.199679000498991,0.429226048136571,0,0,0.360299883542404,0,0,0,0,0.0984274815147488,0,0,0,0.160753148465019,0,0,0,0,0.0607495566580247,0,0,0.104909176269996,0,0,0,0,0,0,1.08599920350743,1.72844298240254,1.30634944043764,0,0.082092520749339,0,0.226624183040251,0.439656701034247,0,0,0.13223260174269,0,0,0.106787412567695,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0.470531639396343,0,0,0.447764408660622,0.467426619694449,0,0.378806010550178,0.50313580350515,1.77962244319307,0.228840068396924,0,0.621748802331122,0.295710299979268,0.159296767163702,0,0.310525913752519,0,0.265841714557995,0,0.450772826991655,1.14241563650639,0,0,0.322231671127465,0,0,0,0,0,0,0,0,0,0,0,0.244736704506468,0,0.617602894321944,0,0.176689145945881,0.38582807654183,0.168942440653073,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0.106691729694141,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0.954013051960256,0.07886174500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| |||
|short_description=p@chr17:38610311..38610321,- | |||
}} |
Latest revision as of 16:27, 25 July 2015
Short description: | p@chr17:38610311..38610321, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:38610311..38610321, - |
Coexpression cluster: | C353_tenocyte_Nucleus_Chondrocyte_Anulus_Fibroblast_Synoviocyte_tridermal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibrocyte | 2.10e-15 | 3 |
tendon cell | 2.10e-15 | 3 |
nucleus pulposus cell of intervertebral disc | 3.11e-14 | 3 |
GAG secreting cell | 6.97e-14 | 9 |
carbohydrate secreting cell | 6.97e-14 | 9 |
stromal cell | 3.76e-10 | 28 |
extracellular matrix secreting cell | 3.38e-08 | 15 |
chondroblast | 4.47e-08 | 6 |
chondrocyte | 4.47e-08 | 6 |
synovial cell | 9.13e-08 | 3 |
connective tissue cell | 3.99e-07 | 361 |
adipocyte of omentum tissue | 7.53e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 1.78e-14 | 3 |
leiomyoma | 1.78e-14 | 3 |
benign neoplasm | 5.52e-11 | 4 |