FFCP PHASE1:Hg19::chr19:18319115..18319122,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:18319115..18319122,+ | |||
|description=CAGE_peak_at_chr19:18319115..18319122,+ | |description=CAGE_peak_at_chr19:18319115..18319122,+ | ||
|id=chr19:18319115..18319122,+ | |id=chr19:18319115..18319122,+ | ||
|ontology_enrichment_celltype=CL:0002582!6.32e-14!3;CL:1000306!4.19e-11!4;CL:0002547!4.19e-11!4;CL:0000057!2.56e-10!75;CL:0002595!1.37e-09!5;CL:0002620!7.10e-09!23;CL:0000055!3.33e-07!180;CL:0002622!6.72e-07!3 | |ontology_enrichment_celltype=CL:0002582!6.32e-14!3;CL:1000306!4.19e-11!4;CL:0002547!4.19e-11!4;CL:0000057!2.56e-10!75;CL:0002595!1.37e-09!5;CL:0002620!7.10e-09!23;CL:0000055!3.33e-07!180;CL:0002622!6.72e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002595;1.49e-59;5!CL:0002593;8.34e-18;2!CL:0000359;1.32e-09;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002595,1.65e-59,5;CL:0002593,1.27e-17,2;CL:0000359,4.87e-10,32;CL:0000192,1.19e-07,43;CL:0000514,1.19e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0060084;2.45e-12;3!DOID:127;2.45e-12;3!DOID:0060072;1.38e-09;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,1.85e-12,3;DOID:127,1.85e-12,3;DOID:0060072,1.12e-09,4 | |||
|ontology_enrichment_uberon=UBERON:0000415!4.19e-11!4;UBERON:0007240!4.19e-11!4;UBERON:0005742!4.19e-11!4;UBERON:0005734!4.19e-11!4;UBERON:0004664!4.19e-11!4;UBERON:0004663!4.19e-11!4;UBERON:0004573!4.30e-10!33;UBERON:0004571!4.30e-10!33;UBERON:0003834!1.37e-09!5;UBERON:0001533!1.37e-09!5;UBERON:0004872!6.36e-08!84;UBERON:0001637!1.37e-07!42;UBERON:0003509!1.37e-07!42;UBERON:0004572!1.37e-07!42;UBERON:0002106!1.67e-07!3;UBERON:0004854!1.67e-07!3;UBERON:0009034!1.67e-07!3;UBERON:0002095!1.67e-07!3;UBERON:0004782!1.67e-07!3;UBERON:0003281!1.67e-07!3;UBERON:0009664!1.67e-07!3;UBERON:0002296!1.67e-07!3;UBERON:0005602!1.67e-07!3;UBERON:0001179!1.67e-07!3;UBERON:0006293!1.67e-07!3 | |ontology_enrichment_uberon=UBERON:0000415!4.19e-11!4;UBERON:0007240!4.19e-11!4;UBERON:0005742!4.19e-11!4;UBERON:0005734!4.19e-11!4;UBERON:0004664!4.19e-11!4;UBERON:0004663!4.19e-11!4;UBERON:0004573!4.30e-10!33;UBERON:0004571!4.30e-10!33;UBERON:0003834!1.37e-09!5;UBERON:0001533!1.37e-09!5;UBERON:0004872!6.36e-08!84;UBERON:0001637!1.37e-07!42;UBERON:0003509!1.37e-07!42;UBERON:0004572!1.37e-07!42;UBERON:0002106!1.67e-07!3;UBERON:0004854!1.67e-07!3;UBERON:0009034!1.67e-07!3;UBERON:0002095!1.67e-07!3;UBERON:0004782!1.67e-07!3;UBERON:0003281!1.67e-07!3;UBERON:0009664!1.67e-07!3;UBERON:0002296!1.67e-07!3;UBERON:0005602!1.67e-07!3;UBERON:0001179!1.67e-07!3;UBERON:0006293!1.67e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0003834;1.49e-59;5!UBERON:0001533;1.49e-59;5!UBERON:0003513;7.47e-43;7!UBERON:0000007;8.34e-18;2!UBERON:0002456;8.34e-18;2!UBERON:0002106;2.45e-12;3!UBERON:0003296;1.38e-09;4!UBERON:0010133;1.38e-09;4!UBERON:0004573;1.52e-08;33!UBERON:0004571;1.52e-08;33!UBERON:0004177;6.33e-08;5!UBERON:0005057;6.33e-08;5!UBERON:0001637;7.59e-07;42!UBERON:0003509;7.59e-07;42!UBERON:0004572;7.59e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003834,1.65e-59,5;UBERON:0001533,1.65e-59,5;UBERON:0003513,8.03e-43,7;UBERON:0000007,1.07e-17,2;UBERON:0002456,1.27e-17,2;UBERON:0002106,2.59e-12,3;UBERON:0004854,2.59e-12,3;UBERON:0009034,2.59e-12,3;UBERON:0002095,2.59e-12,3;UBERON:0004782,2.59e-12,3;UBERON:0003281,2.59e-12,3;UBERON:0009664,2.59e-12,3;UBERON:0002296,2.59e-12,3;UBERON:0005602,2.59e-12,3;UBERON:0001179,2.59e-12,3;UBERON:0006293,2.59e-12,3;UBERON:0004573,9.32e-10,33;UBERON:0004571,9.32e-10,33;UBERON:0003296,1.57e-09,4;UBERON:0010133,1.57e-09,4;UBERON:0001637,8.13e-08,42;UBERON:0003509,8.13e-08,42;UBERON:0004572,8.13e-08,42;UBERON:0004872,6.64e-07,83 | |||
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|short_description=p@chr19:18319115..18319122,+ | |short_description=p@chr19:18319115..18319122,+ | ||
}} | }} | ||
Latest revision as of 05:06, 26 July 2015
| Short description: | p@chr19:18319115..18319122, + |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_at_chr19:18319115..18319122, + |
| Coexpression cluster: | NA |
| Association with transcript: | NA |
| EntrezGene: | NA |
| HGNC: | NA |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| smooth muscle cell of the subclavian artery | 1.65e-59 | 5 |
| smooth muscle cell of the internal thoracic artery | 1.27e-17 | 2 |
| vascular associated smooth muscle cell | 4.87e-10 | 32 |
| smooth muscle cell | 1.19e-07 | 43 |
| smooth muscle myoblast | 1.19e-07 | 43 |
| Ontology term | p-value | n |
|---|---|---|
| thoracic segment blood vessel | 1.65e-59 | 5 |
| subclavian artery | 1.65e-59 | 5 |
| trunk blood vessel | 8.03e-43 | 7 |
| pituitary gland | 1.07e-17 | 2 |
| internal thoracic artery | 1.27e-17 | 2 |
| spleen | 2.59e-12 | 3 |
| gastrointestinal system mesentery | 2.59e-12 | 3 |
| stomach region | 2.59e-12 | 3 |
| mesentery | 2.59e-12 | 3 |
| gastrointestinal system serosa | 2.59e-12 | 3 |
| mesentery of stomach | 2.59e-12 | 3 |
| gut mesentery | 2.59e-12 | 3 |
| dorsal mesentery | 2.59e-12 | 3 |
| dorsal mesogastrium | 2.59e-12 | 3 |
| peritoneal cavity | 2.59e-12 | 3 |
| spleen primordium | 2.59e-12 | 3 |
| systemic artery | 9.32e-10 | 33 |
| systemic arterial system | 9.32e-10 | 33 |
| gland of diencephalon | 1.57e-09 | 4 |
| neuroendocrine gland | 1.57e-09 | 4 |
| artery | 8.13e-08 | 42 |
| arterial blood vessel | 8.13e-08 | 42 |
| arterial system | 8.13e-08 | 42 |
| splanchnic layer of lateral plate mesoderm | 6.64e-07 | 83 |
| Ontology term | p-value | n |
|---|---|---|
| cell type benign neoplasm | 1.85e-12 | 3 |
| leiomyoma | 1.85e-12 | 3 |
| benign neoplasm | 1.12e-09 | 4 |